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Hi, I wonder if there is a general way to generate the correct params file of new beta and gamma NCAA  ? I am trying to parameterize a customized gamma amino acid residue for GenKIC application. I used the molfile_to_params_polymer.py to generate .params file from the .mol file attached below:

4CG.pdb

 OpenBabel04262311383D

 29 28  0  0  1  0  0  0  0  0999 V2000

   -5.3100   -4.8280    2.6840 N   0  0  0  0  0  0  0  0  0  0  0  0

Dear all,

I am designing some peptides with the anchor_design approach. I am using the dG_separated values to compare them. For this, I included an InterfaceAnalyzer mover in my anchor_design xml script as follows:

how to generate _prepro.rama file for a customized beta-amino acid residues? I wish to generate a customized beta-amino acid residue for design applications.

Can you help validate my email address  to access ROSIE via Github. Could you please help me with the verification?

My institution is the ALS Therapy Develpoment Institute, a non profit research institute in Boston, MA 

my email is sperrin@als.net

Thank you very much!

Steve