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Rosetta++ - General
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READ ME FIRST by rmoretti » Fri, 2015-09-04 15:23 |
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3,443 |
by rmoretti Tue, 2017-06-20 08:48 |
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random seed by kosa » Thu, 2008-05-08 03:11 |
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7,525 |
by rmoretti Tue, 2017-06-20 08:47 |
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Building a PDB from a set of internal coordinates. by jcminerlanl » Mon, 2017-03-06 09:47 |
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2,971 |
by rbhatta8 Tue, 2017-03-07 07:22 |
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disulfid bonds by blaumbaer » Wed, 2008-04-30 10:21 |
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6,550 |
by khorvash Thu, 2017-01-19 15:05 |
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error--rosetta fragment‐based refinement protocol for refinement against EM density This topic has been moved to "Rosetta 3 - General " (View topic) |
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FAQ by admin » Mon, 2010-08-30 04:22 |
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5,294 |
by admin Sat, 2015-09-05 12:11 |
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How to prepare the pdblist file for docking_ensmble in Rosetta3.4 This topic has been moved to "Rosetta 3 - General " (View topic) |
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How does Rosetta calculate rms? by rwn » Thu, 2008-05-15 07:41 |
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15,554 |
by rmoretti Tue, 2014-10-14 08:05 |
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Compiling Rosetta on Intel Macs running Leopard (OS X 10.5) by pager2 » Tue, 2008-07-08 11:59 |
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13,822 |
by rmoretti Thu, 2014-06-05 11:17 |
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What's the difference between F and S labeled decoys? by PaulaBanks » Mon, 2013-08-26 23:44 |
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2,420 |
by rmoretti Mon, 2014-04-21 06:48 |
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About the code.What's the difference between ****.fwd.hh and ****.hh by Run » Sat, 2013-07-20 23:51 |
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4,368 |
by rmoretti Mon, 2014-04-21 06:48 |
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Interpreting Clustering Results by PaulaBanks » Sat, 2013-06-08 23:41 |
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4,691 |
by rmoretti Mon, 2014-04-21 06:48 |
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-no_filter flag in docking by banshee » Tue, 2013-05-28 11:58 |
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3,340 |
by banshee Mon, 2014-04-21 06:47 |
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how to score a pdb in rosetta 2.3 by Lindsay » Tue, 2012-07-17 08:42 |
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2,621 |
by smlewis Mon, 2014-04-21 06:47 |
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how to calc the fa_rep in rosetta2.x? by tianbu » Tue, 2012-07-31 08:38 |
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3,496 |
by rmoretti Mon, 2014-04-21 06:47 |
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Does rosetta 3.3 have different energy terms from 2.3 (fixbb design) by Lindsay » Mon, 2012-07-16 13:12 |
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5,035 |
by smlewis Mon, 2014-04-21 06:47 |
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the energy terms in fixbb by tianbu » Sun, 2012-07-29 12:48 |
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5,731 |
by tianbu Mon, 2014-04-21 06:47 |
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Does any paper descript rosetta2.3's scoring function (fixbb ) by tianbu » Fri, 2012-07-27 14:50 |
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4,342 |
by smlewis Mon, 2014-04-21 06:47 |
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difference between score and bk_tot by Lindsay » Wed, 2012-05-23 21:25 |
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2,522 |
by smlewis Mon, 2014-04-21 06:47 |
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AB INITIO WITH METALLOPROTEIN by kaue » Sat, 2012-06-16 04:25 |
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3,280 |
by kaue Mon, 2014-04-21 06:47 |
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what is the F() in rosetta 2.3 by Lindsay » Fri, 2012-06-08 14:44 |
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2,547 |
by smlewis Mon, 2014-04-21 06:47 |
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how to change the parameter weight in rosetta 2.3 by Lindsay » Tue, 2012-04-24 14:09 |
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4,033 |
by Lindsay Mon, 2014-04-21 06:47 |
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multigraft design by spraha » Wed, 2012-01-11 07:57 |
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29,803 |
by Sergey Menis Mon, 2014-04-21 06:47 |
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Why should I do prepack before docking? by ice_flame » Wed, 2011-11-16 04:12 |
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3,427 |
by ice_flame Mon, 2014-04-21 06:47 |
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Can not build the parallel version of rosetta-2.3.1 (the SnugDock). Help!! by ice_flame » Fri, 2011-11-11 07:53 |
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4,640 |
by ice_flame Mon, 2014-04-21 06:47 |
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Dunbrack rotamer energy term... by tsjain » Mon, 2011-06-13 15:19 |
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9,724 |
by qlj Mon, 2014-04-21 06:47 |
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How to model a protein that dimerizes to a small molecule? This topic has been moved to "Rosetta 3 - General " (View topic) |
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Can Rosetta Antibody build a good model for a new sequence?? by ice_flame » Fri, 2011-04-22 17:56 |
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5,006 |
by Sherpaman Mon, 2014-04-21 06:47 |
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Re-building protocol crash by murgantia » Sun, 2011-03-13 05:28 |
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1,930 |
by murgantia Mon, 2014-04-21 06:47 |
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Why a paralleled Rosetta perform like a normal one? by ice_flame » Mon, 2011-03-28 22:23 |
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4,189 |
by smlewis Mon, 2014-04-21 06:47 |
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How to build a parallel version of rosetta++ (Rosetta2.3.0) ? by ice_flame » Fri, 2011-03-25 22:20 |
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2,504 |
by ice_flame Mon, 2014-04-21 06:47 |
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Symmetric local protein docking by efratmas » Mon, 2011-01-17 04:52 |
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2,732 |
by smlewis Mon, 2014-04-21 06:47 |
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RosettaAntibody, Fv without terminal 3 residues by yuich » Sun, 2010-09-26 21:07 |
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3,098 |
by aroop Mon, 2014-04-21 06:47 |
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run_prof.py by joseph » Fri, 2010-11-05 14:38 |
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1,954 |
by joseph Mon, 2014-04-21 06:47 |
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make fragment by joseph » Sun, 2010-10-31 21:16 |
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2,002 |
by joseph Mon, 2014-04-21 06:47 |
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Compiling Rosetta++ 3.1 with alternate gcc by fyros » Thu, 2010-07-22 13:32 |
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3,444 |
by smlewis Mon, 2014-04-21 06:47 |
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Rosetta-2.3.0 build on MAC OSX 10.5.8 by joseph » Wed, 2010-09-08 10:26 |
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4,487 |
by smlewis Mon, 2014-04-21 06:47 |
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Unrecognized Residues in RosettaDock by mboggara » Sat, 2010-03-20 19:48 |
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2,087 |
by mboggara Mon, 2014-04-21 06:47 |
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/usr/bin/ld: cannot find -lmpi_cxx by anusmita_sahoo » Fri, 2010-05-07 10:41 |
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12,862 |
by rlwoltz Mon, 2014-04-21 06:47 |
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distributed computing environment support? by jarod » Sat, 2010-03-13 21:05 |
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2,864 |
by smlewis Mon, 2014-04-21 06:47 |
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use of constraints by anusmita_sahoo » Thu, 2010-06-10 10:54 |
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1,924 |
by anusmita_sahoo Mon, 2014-04-21 06:47 |
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some Q/A about SnugDock by jarod » Fri, 2010-04-30 20:02 |
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2,329 |
by jarod Mon, 2014-04-21 06:47 |
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extract pdb file from silent file .out by anusmita_sahoo » Sun, 2010-05-16 23:50 |
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3,391 |
by anusmita_sahoo Mon, 2014-04-21 06:47 |
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rosetta antibody model, the option -snug_fit by jarod » Thu, 2010-04-01 18:30 |
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2,194 |
by jarod Mon, 2014-04-21 06:47 |
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build error by MS Visual studio 2008 by jarod » Fri, 2010-05-07 22:45 |
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4,401 |
by jarod Mon, 2014-04-21 06:47 |
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loop modeling with KIC mode by wenchangyu2008 » Tue, 2010-03-02 06:05 |
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4,054 |
by wenchangyu2008 Mon, 2014-04-21 06:47 |
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compilation failure in 64-bit mode linux system by kw8cr » Wed, 2010-02-24 22:21 |
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3,877 |
by zdn3023 Mon, 2014-04-21 06:47 |
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Using dipolar coupling restraints in Rosetta v2.3 by pager2 » Mon, 2010-03-08 14:54 |
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2,266 |
by pager2 Mon, 2014-04-21 06:47 |
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Rosetta stops while generating decoys by jjan » Wed, 2010-01-13 00:45 |
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1,931 |
by jjan Mon, 2014-04-21 06:47 |
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Why so wried way? by dikov » Fri, 2010-03-05 04:57 |
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2,355 |
by dikov Mon, 2014-04-21 06:47 |
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Make_fragments.pl database by TiagoGomes » Wed, 2009-10-14 04:46 |
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2,662 |
by brspurri Mon, 2014-04-21 06:47 |
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-regions by mdyini » Wed, 2009-11-25 15:35 |
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1,855 |
by mdyini Mon, 2014-04-21 06:47 |
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terminus capping by mbellows » Wed, 2009-10-07 11:16 |
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3,269 |
by mboggara Mon, 2014-04-21 06:47 |
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what's the meaning of the Ab-Ag Dock with RosettaDock by huairpan » Thu, 2009-10-15 23:26 |
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3,804 |
by huairpan Mon, 2014-04-21 06:47 |
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sequence variability in rosetta design by sdh » Thu, 2009-10-15 03:44 |
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2,618 |
by smlewis Mon, 2014-04-21 06:47 |
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Can Rosetta generate proteins with sidechains ? by wszjzhang » Thu, 2010-01-07 13:08 |
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1,941 |
by wszjzhang Mon, 2014-04-21 06:47 |
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BLOUSE62 by AndrewBworth » Tue, 2009-06-16 13:32 |
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2,673 |
by vanita Mon, 2014-04-21 06:47 |
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To add/include unusual amino acids in RosettaDesign by shirleyzheng » Mon, 2009-07-06 09:34 |
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1,882 |
by shirleyzheng Mon, 2014-04-21 06:47 |
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ligand dock residue selection by Silice » Mon, 2009-08-03 07:54 |
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2,544 |
by Silice Mon, 2014-04-21 06:47 |
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producing good idealized structures by lesi » Thu, 2009-06-18 15:06 |
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4,456 |
by sid Mon, 2014-04-21 06:47 |
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resemble docking use rosettadock found rms=0 in output by lqzhang » Sun, 2009-07-19 06:01 |
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2,693 |
by lqzhang Mon, 2014-04-21 06:47 |
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Problems in installing Rosetta3 in Red Hat Linux by jjz2009 » Fri, 2009-08-21 08:21 |
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2,706 |
by jjz2009 Mon, 2014-04-21 06:47 |
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Subclusters - what are they? by Bob3k » Mon, 2009-06-15 05:58 |
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2,028 |
by Bob3k Mon, 2014-04-21 06:47 |
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pose_ligand_docking? and constraint file... by mdyini » Wed, 2009-07-01 20:13 |
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1,935 |
by mdyini Mon, 2014-04-21 06:47 |
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Scoring Weights by AndrewBworth » Tue, 2009-07-28 18:08 |
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2,879 |
by momeara Mon, 2014-04-21 06:47 |
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flexible backbone design with multiple chains by lesi » Thu, 2009-06-18 14:57 |
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3,830 |
by lqzhang Mon, 2014-04-21 06:47 |
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symmetric design in rosetta3 by sdh » Wed, 2009-07-08 07:30 |
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2,704 |
by smlewis Mon, 2014-04-21 06:47 |
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de novo modeling of a dimer by kosa » Wed, 2009-08-19 05:55 |
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2,960 |
by yangshen Mon, 2014-04-21 06:47 |
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Questions about -fix_natsc and -trim by mdyini » Thu, 2009-06-11 13:27 |
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1,846 |
by mdyini Mon, 2014-04-21 06:47 |
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Re orienting files from the PDB. by AndrewBworth » Thu, 2009-06-25 19:09 |
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2,540 |
by vanita Mon, 2014-04-21 06:47 |
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comparing 2 docking sites : howto ? by lcavallo » Mon, 2009-07-27 13:38 |
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2,644 |
by sid Mon, 2014-04-21 06:47 |
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make_fragments by ctaylor » Mon, 2009-09-21 12:42 |
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5,101 |
by smlewis Mon, 2014-04-21 06:47 |
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Cluster is down.. by AndrewBworth » Wed, 2009-06-17 10:10 |
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2,566 |
by vanita Mon, 2014-04-21 06:47 |
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cluster_info_silent.out GLIB problem by Jungi » Wed, 2009-07-08 01:35 |
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2,672 |
by Jungi Mon, 2014-04-21 06:47 |
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Pose Docking by AndrewBworth » Sat, 2009-08-08 12:50 |
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3,675 |
by matchf Mon, 2014-04-21 06:47 |
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fragments library for starting structures having multiple chains by mdyini » Thu, 2009-06-11 10:34 |
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2,866 |
by mdyini Mon, 2014-04-21 06:47 |
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Piecing together multiple domains by AndrewBworth » Mon, 2009-06-22 14:24 |
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2,647 |
by vanita Mon, 2014-04-21 06:47 |
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Is it possible to score interface in -score mode? **Solved** by maperalta » Thu, 2009-07-23 10:29 |
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3,242 |
by maperalta Mon, 2014-04-21 06:47 |
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Rosetta3 - docking_protocol - fold_tree and number of residues problem by dsept » Sat, 2009-09-05 11:32 |
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6,427 |
by sid Mon, 2014-04-21 06:47 |
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Getting the scorefilter value from a calibration run by lcavallo » Fri, 2009-03-20 06:18 |
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1,717 |
by lcavallo Mon, 2014-04-21 06:47 |
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To apply distance constraint to MULTIPLE residue pairs, what's the format? by shirleyzheng » Mon, 2009-04-06 10:24 |
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9,971 |
by wtscrystal Mon, 2014-04-21 06:47 |
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Build Problem on 64 bit Gentoo by spetzjoe » Thu, 2008-11-20 12:24 |
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4,338 |
by dberkholz Mon, 2014-04-21 06:47 |
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rosetta3 compliation by sdh » Mon, 2009-05-04 03:16 |
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1,658 |
by sdh Mon, 2014-04-21 06:47 |
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disulphides are only sometimes formed by danzinho » Mon, 2009-01-19 08:42 |
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2,322 |
by yiliu Mon, 2014-04-21 06:47 |
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problems building rosetta 2.3.0 with icc by lcavallo » Wed, 2009-03-04 05:32 |
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1,971 |
by lcavallo Mon, 2014-04-21 06:47 |
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Docking with pose_loops - frustration! by mchldln » Wed, 2009-06-10 08:44 |
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3,139 |
by mchldln Mon, 2014-04-21 06:47 |
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test.fasta and test.dat files are not available in Rosetta2.3.0 by suj88 » Mon, 2009-03-23 17:14 |
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2,393 |
by yiliu Mon, 2014-04-21 06:47 |
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Fragment files for incomplet protein by globalcoco » Sat, 2009-04-18 05:16 |
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2,441 |
by vanita Mon, 2014-04-21 06:47 |
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Ab Initio by vamsi » Fri, 2008-11-21 12:42 |
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3,290 |
by rmoretti Mon, 2014-04-21 06:47 |
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RosettaDesign (each run produces the same sequence with many GLY residues ) by shirleyzheng » Wed, 2009-05-13 10:25 |
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5,508 |
by shirleyzheng Mon, 2014-04-21 06:47 |
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Rosetta doesn't read the starting structure - solved by Bob3k » Fri, 2009-02-06 02:00 |
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5,814 |
by Bob3k Mon, 2014-04-21 06:47 |
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Prepacking structures using RosettaDock on a Windows platform by suj88 » Fri, 2009-03-13 14:20 |
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3,580 |
by suj88 Mon, 2014-04-21 06:47 |
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Which vall version are make_fragment based on? by lennylv » Thu, 2009-04-02 05:00 |
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1,767 |
by lennylv Mon, 2014-04-21 06:47 |
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Help with flexible backbone design by neilcifer » Thu, 2008-11-20 10:45 |
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1,681 |
by neilcifer Mon, 2014-04-21 06:47 |
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Cluster methodology by TiagoGomes » Wed, 2009-04-29 11:53 |
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1,987 |
by TiagoGomes Mon, 2014-04-21 06:47 |
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modelling loops and inserted domains by danzinho » Fri, 2009-01-16 02:14 |
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6,709 |
by wenchangyu2008 Mon, 2014-04-21 06:47 |
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Compilation Error 1 after 'make gcc' command by suj88 » Wed, 2009-02-25 14:24 |
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5,796 |
by Bob3k Mon, 2014-04-21 06:47 |
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RosettaDock with loop rebuild HOWTO ? by lcavallo » Thu, 2009-06-04 09:12 |
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4,918 |
by mchldln Mon, 2014-04-21 06:47 |
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Alanine Scanning of UbcH7- E6AP Interface by suj88 » Mon, 2009-03-23 15:58 |
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3,052 |
by kristiankrantz Mon, 2014-04-21 06:47 |
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Side chain sampling by mayo » Wed, 2009-04-15 10:14 |
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2,629 |
by kaufmann Mon, 2014-04-21 06:47 |
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