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How to get the GDT_TS?

Submitted by JadAbbass on Thu, 2013-09-05 11:59

Dear all,

I have got results (silent and score files)for many targets. Although, I provided the native file, I couldn't find the GDT_TS in the score file.

I have got the rmsd, but I need both rmsd and GDT_TS. Is there any Rosetta's tool (or even an independent tool) to calculate the GDT_TS of a native structure against a silent file?

Thank you in advance,
Jad

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Rosetta 3 - General

Comparison between two fragment pickers

Submitted by qlj on Mon, 2013-09-02 06:34

Hi all,
I recently read a paper named "Generalized fragment picking in Rosetta: design, protocols and applications", and I ran the picker by Rosetta3.4.
In this paper, the method of comparison two fragment pickers is in terms of the results of ab-initio structure prediction benchmark. I think it is exceedingly difficult to make accurate, general statements. Did you go through some papers to directly evaluate fragment library by another objective methods. Do you have anything recommended, and I need your guidance and help.
Thank you!

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Rosetta 3 - General

Help with build on Fedora 19

Submitted by BhacSsylan on Sun, 2013-09-01 18:27

Hello there, I've been struggling with building Rosetta for about a week now and seem to have gotten myself good and stuck, so I was wondering if I could get some advice. I'm new to both Rosetta and Linux, which I'm sure is not helping. I just installed Fedora 19 after failing at using Cygwin, and I'm still getting lots of problems. I have SCons and gcc now (and subversion which I realize now I don't need but oh, well), but when I attempt to build Rosetta I still get a massive list of errors, almost all ending in

"sh: o: command not found"

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Rosetta 3 - Build/Install

Rosetta documentation

Submitted by Ashafix on Sat, 2013-08-31 06:50

Dear Rosetta community,

is there any way to improve the Rosetta documentation for people who are not actively involved in the development?
For people who are not intimately familiar with Rosetta and it's inner organs it is quite hard to use the Rosetta suite by reading the documentation only.

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Rosetta 3 - General

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