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PyRosetta - General

Topic / Topic starter Replies Viewssort descending Last post
Normal topic Help on Chimera Creator/Homodomain script
by jadolfbr » Mon, 2010-06-14 21:34
1
3,282 by mark.wilson
Mon, 2014-04-21 06:47
Normal topic Relax with constraints
by yijietseng » Tue, 2019-05-07 11:16
2
3,303 by yijietseng
Wed, 2019-05-22 09:54
Normal topic JobDistributor Bug
by brettth » Fri, 2011-03-11 07:00
1
3,305 by smlewis
Mon, 2014-04-21 06:47
Normal topic RuntimeError: unidentifiable C++ exception in both linux and window.
by wajidarshad » Tue, 2015-10-27 08:16
1
3,309 by rmoretti
Tue, 2015-10-27 08:46
Normal topic Windows Dunbrack10.lib.bin "out dated"
by protos_heis » Thu, 2015-02-26 13:35
2
3,335 by protos_heis
Fri, 2015-02-27 13:38
Normal topic Calling SnugDock from PyRosetta
by shruthi.murali » Wed, 2020-07-29 15:10
4
3,338 by antonkulaga
Thu, 2021-12-23 16:07
Normal topic BluePrintBDRMover set_atom_type error
by ac.research » Sat, 2017-12-09 02:16
3
3,347 by rmoretti
Sat, 2017-12-16 14:06
Normal topic Error with etable_atom_pair_energies()
by yijietseng » Mon, 2019-01-28 14:00
2
3,358 by yijietseng
Tue, 2019-05-07 11:02
Normal topic Rosetta Docking server
by hourosetta » Fri, 2011-02-11 08:36
1
3,423 by smlewis
Mon, 2014-04-21 06:47
Normal topic Using pyrosetta to generate quaternary structure of protein
by nasim.soltani58 » Thu, 2020-11-19 17:35
5
3,460 by nasim.soltani58
Tue, 2020-12-08 22:45
Normal topic Problems when inserting spin-label R1A
by ajasja » Fri, 2014-06-27 04:14
2
3,480 by ajasja
Thu, 2014-07-03 05:36
Normal topic Trying to call pack_rotamers_setup()
by pachecoj » Tue, 2013-07-23 16:07
2
3,489 by Sergey
Mon, 2014-04-21 06:48
Normal topic Reading poses from silent file that need a params file
by Martin Floor » Mon, 2018-08-13 12:25
2
3,491 by Martin Floor
Mon, 2018-08-27 10:51
Normal topic generate_nonstandard_residue_set Exception
by lah435 » Tue, 2017-06-13 18:28
3
3,492 by lah435
Fri, 2017-06-16 12:24
Normal topic loop modeling error 'CcdLoopClosureMover' object is not callable
by jai_INMAS » Tue, 2013-10-22 01:49
2
3,516 by jai_INMAS
Mon, 2014-04-21 06:48
Normal topic Relax with constraints in PyRosetta
by ac.research » Tue, 2017-11-21 10:17
1
3,520 by rmoretti
Sat, 2017-12-09 01:50
Normal topic how to realize a free bb design? PackMover=fixed bb!
by ast » Wed, 2011-08-31 09:41
1
3,575 by rmoretti
Mon, 2014-04-21 06:47
Normal topic libmini.dylib
by evo_umich » Fri, 2011-09-23 14:08
2
3,582 by evo_umich
Mon, 2014-04-21 06:47
Normal topic Coordinates in pose do not match those in PDB
by ajasja » Tue, 2014-10-28 12:29
2
3,623 by ajasja
Thu, 2014-10-30 08:32
Normal topic set constraints
by zgcarvalho » Wed, 2010-02-24 09:42
3
3,658 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic Charmm, hydroxyproline, hydrogen atom ID
by rfschleif » Tue, 2011-07-12 11:26
1
3,662 by rfschleif
Mon, 2014-04-21 06:47
Normal topic preparation the fragment files for mutants
by Victor » Wed, 2012-02-22 11:04
3
3,668 by smlewis
Mon, 2014-04-21 06:47
Normal topic Energy of individual loop/region
by jadolfbr » Mon, 2012-04-02 13:15
3
3,673 by smlewis
Mon, 2014-04-21 06:47
Normal topic Weird message whenever I try to calculate energies
by astrofunk » Fri, 2010-08-20 05:55
2
3,698 by astrofunk
Mon, 2014-04-21 06:47
Normal topic Mistake about rosetta.init()
by sprinkle166 » Tue, 2017-09-26 09:46
3
3,748 by sprinkle166
Wed, 2017-09-27 09:17
Normal topic Missing movers in OSX PyRosetta
by lah435 » Fri, 2012-11-16 15:45
2
3,765 by lah435
Mon, 2014-04-21 06:47
Normal topic How to set options under PyRosetta
by lennylv » Thu, 2011-01-06 18:11
1
3,800 by Sergey
Mon, 2014-04-21 06:47
Normal topic Can I export command line & result from iPython PyRosetta shell to a text file?
by lanselibai » Mon, 2014-08-25 04:05
2
3,824 by lanselibai
Tue, 2014-08-26 01:49
Normal topic Define custom potential?
by rfschleif » Fri, 2011-05-06 11:25
2
3,848 by weitzner
Mon, 2014-04-21 06:47
Normal topic Best Way to Append/Insert Residue
by jaulicino » Tue, 2020-07-21 10:24
3
3,864 by matteoferla
Sat, 2020-07-25 03:52
Normal topic Simple mover that holds lowest energy pose
by jadolfbr » Fri, 2013-03-15 13:23
3
3,872 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic Nonstandard residue parameters fail
by lah435 » Wed, 2014-08-06 17:53
2
3,885 by lah435
Mon, 2014-08-18 17:23
Normal topic Failure appending a residue
by rfschleif » Thu, 2011-06-16 10:53
2
3,889 by smlewis
Mon, 2014-04-21 06:47
Normal topic Units of kT for MC mover
by msellers » Fri, 2010-12-10 05:40
1
3,923 by smlewis
Mon, 2014-04-21 06:47
Normal topic Writing out individual residues to a pdbfile
by SenyorDrew » Thu, 2016-12-08 07:33
3
3,939 by SenyorDrew
Thu, 2016-12-08 13:10
Normal topic Symmetric pose initialization fails
by gudmal » Tue, 2013-11-26 06:42
3
3,971 by Sergey
Mon, 2014-04-21 06:48
Normal topic Capturing the output of scorefxn.show(pose)
by ajasja » Fri, 2014-06-20 05:30
2
4,024 by ajasja
Sat, 2014-06-21 11:57
Normal topic Specifying disulfide bonds
by msellers » Thu, 2010-12-02 10:38
1
4,036 by msellers
Mon, 2014-04-21 06:47
Normal topic Username and Password for download link?
by juden99 » Thu, 2011-02-17 03:30
3
4,044 by juden99
Mon, 2014-04-21 06:47
Normal topic Score2 and Score5...aren't hey meant to be different?
by oppopomoz » Wed, 2013-02-20 03:31
2
4,051 by smlewis
Mon, 2014-04-21 06:47
Normal topic Beta-Hairpin Design
by bharat_46010 » Wed, 2014-02-12 23:18
2
4,056 by bharat_46010
Thu, 2014-02-13 16:00
Normal topic PyRosetta memory footprint
by LiorZ » Thu, 2016-06-16 04:36
3
4,109 by LiorZ
Fri, 2016-06-17 08:20
Normal topic pose.replace_residue() & incorrect scoring
by msun » Tue, 2015-10-06 10:51
3
4,115 by rmoretti
Wed, 2015-10-07 16:35
Normal topic cartesian delta delta G
by patcD » Wed, 2021-02-10 01:46
4
4,115 by arjan-hada
Sat, 2024-01-27 05:45
Normal topic Foldtree setup, jump problem in PyRosetta 2.0
by msellers » Thu, 2011-07-21 12:00
2
4,122 by msellers
Mon, 2014-04-21 06:47
Normal topic New Windows build is available for download
by Sergey » Fri, 2014-07-18 13:50
2
4,122 by ajasja
Fri, 2014-08-22 08:32
Normal topic Generating random number using numeric.random
by resiros » Thu, 2014-10-23 09:25
3
4,136 by rmoretti
Wed, 2014-10-29 10:00
Normal topic Complex DNA Protein docking
by kim-nguyen » Wed, 2015-07-22 13:49
2
4,146 by kim-nguyen
Fri, 2015-07-24 23:04
Normal topic Getting which rigid body a residue belongs to?
by JuliusSu » Thu, 2014-04-17 21:12
3
4,181 by jadolfbr
Mon, 2014-04-21 17:28
Normal topic read parameters of metal ions
by Stefan » Tue, 2011-07-19 08:38
2
4,208 by Stefan
Mon, 2014-04-21 06:47
Normal topic Allowing cysteines to repack
by eyliaw » Thu, 2012-07-05 14:46
3
4,258 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Dunbrack Library
by jadolfbr » Tue, 2011-05-10 13:59
3
4,261 by weitzner
Mon, 2014-04-21 06:47
Normal topic installing PyRosetta on Mac OSX 10.6 and Linux in VMWare
by sid » Tue, 2009-10-06 09:04
2
4,276 by reve_etrange
Mon, 2014-04-21 06:47
Normal topic How to fold membrane protein in PyRosetta?
by assignfit » Fri, 2011-02-25 21:39
3
4,293 by assignfit
Mon, 2014-04-21 06:47
Normal topic Regarding the Documentation of Rosetta and PyRosetta
by jai_INMAS » Tue, 2013-10-22 23:41
3
4,306 by jai_INMAS
Mon, 2014-04-21 06:48
Normal topic ClassicRelax: how to block the backbone
by oppopomoz » Fri, 2015-11-27 08:17
3
4,325 by rmoretti
Tue, 2015-12-01 15:18
Normal topic Pyrosetta 2.0 - Dunbrak library binary not loading - strange repacking score
by msellers » Wed, 2011-05-11 06:24
3
4,329 by smlewis
Mon, 2014-04-21 06:47
Normal topic Using ref2015 and talaris2014 in the same script
by SenyorDrew » Wed, 2017-11-01 10:24
2
4,339 by SenyorDrew
Wed, 2017-11-01 10:39
Normal topic Difference between GenericMonteCarloMover() and GenericSimulatedAnnealer()
by ac.research » Fri, 2018-05-11 10:37
4
4,340 by ac.research
Fri, 2018-05-11 15:46
Normal topic Documentation of ``mysterious'' protocols
by ñ » Wed, 2013-10-30 08:19
3
4,342 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic hbond_sr_bb, hbond_lr_bb, fa_intra_rep energies from ScoreFunction()
by gerdos » Tue, 2017-04-18 04:46
4
4,383 by gerdos
Fri, 2017-04-21 01:53
Normal topic Namespace PyRosetta Build for Windows?
by protos_heis » Sat, 2015-08-15 10:49
3
4,446 by Sergey
Wed, 2015-08-19 15:47
Normal topic PyRosetta coding subtleties
by lah435 » Wed, 2013-03-27 02:59
2
4,449 by Sergey
Mon, 2014-04-21 06:47
Normal topic Cannot get PyMOL_mover to work on MacOS
by cno » Fri, 2012-02-10 07:24
2
4,472 by cno
Mon, 2014-04-21 06:47
Normal topic Using pose.set_xyz() to move chains causes increase in only pro_close energy
by msellers » Mon, 2011-07-25 06:57
3
4,510 by msellers
Mon, 2014-04-21 06:47
Normal topic Quadratic Function for Distance Constraints?
by protos_heis » Mon, 2014-01-27 06:21
4
4,514 by protos_heis
Mon, 2014-04-21 06:48
Normal topic Error in core/scoring/methods/VDW_Energy.cc line: 169
by pepfolder » Thu, 2012-05-31 11:13
2
4,540 by pepfolder
Mon, 2014-04-21 06:47
Normal topic Problems with SmoothFragmentMover
by epalovcak » Wed, 2013-10-02 09:20
3
4,560 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic [Solved] PyRosetta segmentation fault in Linux
by AlexI » Wed, 2010-02-03 22:59
2
4,562 by AlexI
Mon, 2014-04-21 06:47
Normal topic Questions on rotamer-rotamer energies
by pachecoj » Fri, 2013-07-26 05:01
3
4,596 by rmoretti
Mon, 2014-04-21 06:48
Normal topic RNA docking
by eschulz » Tue, 2012-02-28 03:04
1
4,626 by smlewis
Mon, 2014-04-21 06:47
Normal topic Enumerating torsion (dihedral) angles
by ajasja » Wed, 2014-10-01 09:10
2
4,635 by rmoretti
Mon, 2014-10-06 15:10
Normal topic Using OStream objects in PyRosetta
by ggyimesi » Mon, 2014-02-10 03:10
3
4,637 by ggyimesi
Mon, 2014-02-17 09:52
Normal topic GPU computing and PyRosetta
by oppopomoz » Thu, 2013-07-11 05:55
1
4,643 by rmoretti
Mon, 2014-04-21 06:48
Normal topic add missing residues into rna
by galvaner » Tue, 2015-09-15 16:41
3
4,647 by galvaner
Mon, 2015-09-21 13:37
Normal topic Iterating over graph edges in PyRosetta.
by ajasja » Mon, 2014-09-22 07:21
3
4,670 by rmoretti
Mon, 2014-09-29 00:06
Normal topic fragment building
by StevPChem » Tue, 2015-08-04 09:01
3
4,693 by StevPChem
Thu, 2015-08-06 11:07
Normal topic PyRosetta + PyMol
by reve_etrange » Mon, 2009-11-23 16:44
3
4,695 by reve_etrange
Mon, 2014-04-21 06:47
Normal topic RosettaModel blueprint for PyRosetta
by bbrown11 » Tue, 2015-03-03 13:53
3
4,704 by matteoferla
Thu, 2021-04-29 06:30
Normal topic rmsd and Lrmsd in loop modeling
by Victor » Tue, 2012-01-24 09:52
3
4,727 by Victor
Mon, 2014-04-21 06:47
Normal topic Rosetta get_fa_scorefxn()
by israeldesta » Thu, 2019-10-31 10:18
3
4,753 by jadolfbr
Thu, 2019-11-14 15:33
Normal topic Does Rosetta scoring function can distinguish good structure from bad one?
by Victor » Sun, 2013-06-16 21:11
4
4,761 by Victor
Mon, 2014-04-21 06:48
Normal topic adding nucleotides to a dna model
by jadolfbr » Wed, 2012-12-05 11:40
3
4,766 by smlewis
Mon, 2014-04-21 06:47
Normal topic Inconsistencies in full atom energy calculations
by dsim » Tue, 2014-07-29 06:02
4
4,784 by dsim
Mon, 2014-09-15 07:47
Normal topic input_pdb
by evo_umich » Sat, 2011-10-01 14:20
3
4,806 by evo_umich
Mon, 2014-04-21 06:47
Normal topic Go parallel
by assignfit » Tue, 2011-11-29 10:47
4
4,824 by smlewis
Mon, 2014-04-21 06:47
Normal topic Deprotonated LYS
by Arik » Wed, 2011-06-22 16:34
3
4,878 by smlewis
Mon, 2014-04-21 06:47
Normal topic [Solved] Segmentation fault
by zgcarvalho » Thu, 2010-02-11 06:30
2
4,884 by zgcarvalho
Mon, 2014-04-21 06:47
Normal topic Peptide design
by AOK » Thu, 2011-02-03 11:35
3
4,887 by smlewis
Mon, 2014-04-21 06:47
Normal topic Getting chi rotamers
by ajasja » Tue, 2014-08-26 12:11
3
4,893 by rmoretti
Tue, 2014-09-23 08:36
Normal topic Resfile Error
by ac.research » Wed, 2019-07-17 13:25
3
4,900 by vmulligan
Fri, 2019-07-26 15:08
Normal topic Disuplhide bonds
by batch2k » Tue, 2009-12-15 09:57
3
5,008 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic pymover = PyMOL_Mover() hangs IPython?
by cossio » Fri, 2015-04-10 07:38
4
5,065 by cossio
Wed, 2015-04-15 12:31
Normal topic RosettaHoles for PyRosetta - Void Detection/Scoring
by ac.research » Sat, 2017-07-01 11:28
5
5,111 by rmoretti
Thu, 2017-07-06 12:49
Normal topic Problem about Pyrosetta installation win7
by sprinkle166 » Mon, 2017-09-04 20:15
5
5,122 by sprinkle166
Fri, 2017-09-08 12:57
Normal topic Rotamer bin vector from chi angles of a residue in pose not found in Dunbrack rotamer library
by AyushGoyal » Mon, 2014-02-24 22:18
3
5,142 by rmoretti
Wed, 2014-02-26 09:40
Normal topic Interface Design
by brettth » Wed, 2010-12-08 07:25
2
5,153 by SunH
Mon, 2014-04-21 06:47
Normal topic Fragments file
by Run » Tue, 2013-11-26 02:40
4
5,171 by rmoretti
Mon, 2014-04-21 06:48
Normal topic "No Python class registered..." when trying to access SymDofs
by pitmand » Tue, 2015-03-17 14:29
3
5,185 by Sergey
Fri, 2015-03-27 14:34
Normal topic Altering Score/EMapVector
by mmertens » Fri, 2012-01-27 09:33
5
5,207 by rmoretti
Mon, 2014-04-21 06:47
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