You are here
Rosetta 3 - Applications
Log in to post new content in the forum.
| Topic / Topic starter |
Replies |
Views | Last post | |
|---|---|---|---|---|
|
Connecting linkers by Prasanth Kumar » Tue, 2014-05-06 00:53 |
1 |
2,098 |
by smlewis Mon, 2014-05-12 08:32 |
|
|
Symmetry definition for apolar helix by vanrooyenjason » Tue, 2016-01-05 05:20 |
1 |
2,235 |
by rmoretti Fri, 2016-04-29 09:21 |
|
|
Sampling a wider range of RMSD of poses by Rosetta Dock by johnnytam100 » Tue, 2019-05-21 22:28 |
1 |
657 |
by johnnytam100 Thu, 2019-05-23 20:52 |
|
|
ligand conformer generation for enzyme design by bo » Mon, 2013-02-11 16:51 |
1 |
1,737 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Make Fragments by Run » Mon, 2013-11-11 05:31 |
1 |
1,920 |
by smlewis Mon, 2014-04-21 06:48 |
|
|
Enzyme design output silent file and score file by deltag » Fri, 2012-09-28 13:07 |
1 |
1,691 |
by rmoretti Mon, 2014-04-21 06:47 |
|
|
debug rosetta_scripts FunFolDes run by tatsiana.bylund » Sun, 2019-08-18 23:17 |
1 |
548 |
by neelamraju.srid... Wed, 2020-11-18 05:47 |
|
|
Creating model of 89-90 residues by ab initio methodology-help by krlitros87 » Sun, 2014-05-25 12:12 |
1 |
1,480 |
by rmoretti Mon, 2014-05-26 09:29 |
|
|
Membrane ab-initio modelling of a beta-strand by hzhekova » Mon, 2019-06-10 14:22 |
1 |
666 |
by rmoretti Mon, 2019-06-24 14:39 |
|
|
density scoring by Tianyang89 » Sat, 2020-08-29 04:54 |
1 |
406 |
by danpf Sun, 2020-08-30 22:23 |
|
|
Is it possible to restart the ddg_monomer.linuxgccrelease? by lanselibai » Mon, 2015-09-07 03:46 |
1 |
1,295 |
by rmoretti Wed, 2015-09-09 12:01 |
|
|
Rosetta failed in making score.fsc by josdee » Sun, 2017-02-05 21:58 |
1 |
1,057 |
by smlewis Mon, 2017-02-06 06:57 |
|
|
Alanine Scanning by gjbartlett » Mon, 2013-08-05 07:02 |
1 |
2,676 |
by rmoretti Mon, 2014-04-21 06:48 |
|
|
Enzyme Design with additional covalent backbone bonds by mwfranklin » Wed, 2016-08-03 10:23 |
1 |
1,595 |
by rmoretti Mon, 2016-09-05 11:29 |
|
|
Getting error with Rosetta "antibody.linuxgccrelease" command by Sunyp_IM » Mon, 2017-08-07 19:40 |
1 |
1,441 |
by smlewis Tue, 2017-08-15 23:19 |
|
|
can anyone help me correct this script to do alanine scanning by xinmiaohe » Mon, 2019-08-26 17:23 |
1 |
663 |
by xinmiaohe Mon, 2019-08-26 18:16 |
|
|
ProteinInterfaceMS by rbjacob » Wed, 2018-10-24 11:31 |
1 |
651 |
by rmoretti Wed, 2018-11-21 15:10 |
|
|
polymer docking using rosetta scripts by syntekabio2019 » Fri, 2020-11-27 01:51 |
1 |
204 |
by rmoretti Fri, 2020-11-27 10:47 |
|
|
Files for Spatial Constraints by Derek » Tue, 2016-04-12 01:00 |
1 |
1,167 |
by Derek Wed, 2016-04-27 01:31 |
|
|
Partial Active Site Design for a Novel Substrate by Derek » Wed, 2017-05-17 19:41 |
1 |
978 |
by rmoretti Thu, 2017-05-18 13:51 |
|
|
Calbur vs Energy Based Clustering by Swillard » Sun, 2018-07-01 13:24 |
1 |
963 |
by rmoretti Fri, 2018-08-03 08:26 |
|
|
kcenters_clustering_of_fragments by bjharris » Mon, 2019-07-01 16:16 |
1 |
590 |
by bjharris Wed, 2020-07-01 23:25 |
|
|
rosetta scores for mutated structures by harshkhare » Wed, 2011-11-23 09:30 |
1 |
1,991 |
by rmoretti Mon, 2014-04-21 06:47 |
|
|
number of structures in homology modeling for cluster analysis by pdbb » Fri, 2013-04-12 08:52 |
1 |
1,929 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
ddg_monomer "ERROR: seqpos >= 1" by cossio » Fri, 2015-10-02 12:20 |
1 |
1,491 |
by rmoretti Fri, 2015-10-02 12:30 |
|
|
manually defining CDRs in antibody modelling by gard.nelson » Fri, 2020-07-10 13:31 |
1 |
343 |
by brspurri Wed, 2021-01-20 08:11 |
|
|
FloppyTail options error by DmitriiN » Fri, 2016-11-11 02:54 |
1 |
1,092 |
by smlewis Fri, 2016-11-11 08:33 |
|
|
LoopModeler mover unable to determine cut point by gszwabowski » Mon, 2020-06-01 13:12 |
1 |
446 |
by matteoferla Thu, 2020-07-02 07:27 |
|
|
protein-protein docking by cbala » Mon, 2011-04-18 09:15 |
1 |
1,857 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
docking with constraints by talavera » Tue, 2013-05-07 01:50 |
1 |
3,106 |
by rmoretti Mon, 2014-04-21 06:47 |
|
|
score_jd2 errors out with: ERROR: [ERROR] Error opening RBSeg file 'batch_000065_000059' by sn » Fri, 2017-03-24 12:26 |
1 |
1,023 |
by rmoretti Fri, 2017-03-24 13:39 |
|
|
protein interction design by Negarsardar » Wed, 2019-05-15 12:01 |
1 |
628 |
by rmoretti Wed, 2019-07-10 09:24 |
|
|
get an increased energy after energy minimization when using different score functions for repacking and energy minimization by xinmiaohe » Fri, 2020-02-07 11:59 |
1 |
484 |
by xinmiaohe Fri, 2020-02-07 13:52 |
|
|
ArchiveManager -- spinning down by Marius1987 » Fri, 2016-12-23 03:10 |
1 |
1,089 |
by smlewis Fri, 2016-12-23 07:04 |
|
|
Abinitio error: std::out_of_range: basic_string by Harley Worthy » Tue, 2017-10-31 15:20 |
1 |
1,205 |
by Harley Worthy Thu, 2017-11-02 08:53 |
|
|
how to "rescore" the models using lowest energy model from rosetta run as native, for RMSD vs Score plot? by Danielsebas » Tue, 2019-09-24 03:51 |
1 |
556 |
by smlewis Tue, 2019-09-24 12:43 |
|
|
PDB moves after relaxing by Hr13b » Fri, 2018-07-27 13:12 |
1 |
678 |
by smlewis Fri, 2018-07-27 13:32 |
|
|
can remodel add loops in one chain in multichain PDB structure? by ksteczk » Fri, 2020-05-01 06:26 |
1 |
438 |
by matteoferla Mon, 2020-05-04 01:43 |
|
|
Binding energy contribution broken down by residue by brspurri » Tue, 2013-07-23 12:47 |
1 |
1,996 |
by rmoretti Mon, 2014-04-21 06:48 |
|
|
Holes output interpretation by lah435 » Mon, 2012-06-04 15:02 |
1 |
1,733 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
relax VS. backrub by jiongzhang » Mon, 2012-07-02 14:52 |
1 |
1,771 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Protein-DNA Docking using RosettaScripts? by brspurri » Fri, 2013-06-07 09:06 |
1 |
3,429 |
by rmoretti Mon, 2014-04-21 06:48 |
|
|
Ab-initio modeling on part of the protein by xiayanlawrence » Thu, 2013-12-19 07:45 |
1 |
2,652 |
by rmoretti Mon, 2014-04-21 06:48 |
|
|
latest version of rosetta unable to build models by pramod » Mon, 2014-11-03 11:31 |
1 |
1,760 |
by rmoretti Tue, 2014-11-04 10:33 |
|
|
RosettaRemodel: ERROR: 'Replacing' an atom which doesn't currently exist. by kamau » Fri, 2017-12-01 08:42 |
1 |
902 |
by kamau Wed, 2017-12-13 14:31 |
|
|
Adding 'virtual' residues for N- and C-terminal optimisation by Derek Smith » Thu, 2014-08-14 23:18 |
1 |
1,527 |
by jadolfbr Fri, 2014-10-31 09:00 |
|
|
Adding positional restraints to pure RNA system in DRRAFTER and rna_denovo by zharmad » Fri, 2019-08-23 01:16 |
1 |
487 |
by everyday847 Fri, 2019-08-23 04:08 |
|
|
VH-VL Orientation in antibody by sujigeorge1979 » Mon, 2019-06-17 01:23 |
1 |
662 |
by jeliazkov Mon, 2019-06-17 06:03 |
|
|
Surface accessible residue as a constraint. by arthuc01 » Fri, 2012-03-09 23:27 |
1 |
1,568 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
hybrid approach - comparative and ab initio modelling by eprates » Wed, 2019-03-20 11:58 |
1 |
666 |
by rmoretti Fri, 2019-03-29 09:45 |
|
|
Loopmodel with DNA has no energy score by Nicky_Learning_... » Sun, 2015-05-10 19:31 |
1 |
1,483 |
by rmoretti Mon, 2015-05-25 12:30 |
|
|
Loop modeling: KIC with fragments producing unusual models by kamau » Mon, 2015-06-01 12:06 |
1 |
1,452 |
by rmoretti Sat, 2015-06-20 20:07 |
|
|
RosettaMatch outputs by mwfranklin » Tue, 2016-10-11 11:46 |
1 |
1,329 |
by rmoretti Fri, 2016-10-14 08:56 |
|
|
Problem passing a list of PDB files to minimize_with_cst by dolevrahat » Sun, 2018-11-18 16:13 |
1 |
761 |
by rmoretti Wed, 2018-11-21 15:31 |
|
|
FlexPepDock in RosettaScripts keeps running by gw » Tue, 2012-08-21 12:31 |
1 |
1,878 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
FloppyTail vs. Remodel for linkers by attesor » Mon, 2014-07-07 08:36 |
1 |
1,540 |
by smlewis Mon, 2014-07-07 11:58 |
|
|
Error in Loop modeling and other queries by ashu4487 » Wed, 2016-05-11 18:23 |
1 |
1,467 |
by rmoretti Fri, 2016-06-17 10:15 |
|
|
"Angle constraint: 0-length bonds" error by purvi24 » Sun, 2019-07-28 10:09 |
1 |
606 |
by rmoretti Mon, 2019-08-26 12:49 |
|
|
Instructing design scripts to use noncanonical AA instead of canonical by zcrook » Tue, 2014-11-25 10:43 |
1 |
1,347 |
by rmoretti Wed, 2014-11-26 07:51 |
|
|
Modeling the structure of camel single domain antibody by Sunyp_IM » Mon, 2018-01-08 00:34 |
1 |
1,281 |
by Sunyp_IM Mon, 2018-01-08 00:55 |
|
|
Usage of the TaskOperations "RestrictToCDRsAndNeighbors" by johnnytam100 » Wed, 2019-04-10 02:58 |
1 |
690 |
by rmoretti Wed, 2019-07-10 10:10 |
|
|
Remodel: the pose does not have residue with chain=H, PDBnum=114 by lanselibai » Wed, 2019-12-25 13:35 |
1 |
631 |
by lanselibai Fri, 2019-12-27 09:38 |
|
|
Should I be stripping water molecules from my input structure for Rosetta Design? by chrisHKL » Wed, 2021-03-24 14:22 |
1 |
88 |
by smlewis Wed, 2021-03-24 14:59 |
|
|
Fragment Files by nkemjika » Fri, 2011-07-22 15:11 |
1 |
2,206 |
by dgront Mon, 2014-04-21 06:47 |
|
|
Membrane Abinitio modeling by bharat_46010 » Mon, 2017-03-13 22:39 |
1 |
945 |
by benhardy Wed, 2020-09-30 04:24 |
|
|
missing atom number 5 atom name CB by ajaniharesh » Fri, 2019-04-26 12:08 |
1 |
689 |
by rmoretti Fri, 2019-04-26 12:13 |
|
|
fixing sequence during grafting in antibody_designer by COM » Fri, 2020-01-24 11:38 |
1 |
507 |
by jadolfbr Tue, 2020-01-28 09:13 |
|
|
molfile_to_params script error by pablogalazdavison » Tue, 2015-07-07 21:22 |
1 |
1,663 |
by rmoretti Tue, 2015-07-14 14:59 |
|
|
Threading with Ligand by ekwan » Thu, 2018-12-06 15:10 |
1 |
698 |
by rmoretti Fri, 2019-03-29 13:21 |
|
|
Error with RosettaAntibodyDesign when running antibody_designer.linuxgccrelease by bdzhh » Tue, 2019-09-17 17:02 |
1 |
561 |
by jadolfbr Thu, 2019-09-19 08:53 |
|
|
Flexible peptide docking with flexible receptor backbone by tevang » Fri, 2012-09-14 11:18 |
1 |
2,059 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Ligand docking at specific orientation by ShiranBZ » Mon, 2020-04-13 20:46 |
1 |
395 |
by matteoferla Mon, 2020-05-04 02:02 |
|
|
Docking on mpi. by Pernille » Mon, 2014-07-28 08:40 |
1 |
2,115 |
by rmoretti Mon, 2014-08-04 14:51 |
|
|
score application by Hongtham » Tue, 2014-12-23 06:38 |
1 |
1,264 |
by rmoretti Fri, 2015-01-02 11:06 |
|
|
ROSETTALIGAND: How to prepare data to plot ROC curves using rosettaligand docking result??? by Ryhon Wang » Mon, 2016-01-04 22:36 |
1 |
2,016 |
by rmoretti Tue, 2016-01-05 08:35 |
|
|
Mutating phosphorylated residues to "canonical" residues and vice versa by ValentinaSora » Mon, 2019-05-20 05:58 |
1 |
914 |
by rmoretti Wed, 2019-07-10 09:22 |
|
|
remodel ERROR: unrecognized mm_atom_type_name RGU by daniloboskovic » Sat, 2020-02-22 11:55 |
1 |
451 |
by daniloboskovic Tue, 2020-02-25 08:28 |
|
|
Symmetric docking with multiple chains as asymmetric unit by sarah29 » Tue, 2013-11-05 20:24 |
1 |
2,375 |
by rmoretti Mon, 2014-04-21 06:48 |
|
|
Constraint generator by Alison_Yajie » Wed, 2020-06-17 20:14 |
1 |
372 |
by Alison_Yajie Wed, 2020-06-17 20:35 |
|
|
Ligand Docking with ARLS by cam11 » Thu, 2016-06-23 09:34 |
1 |
1,340 |
by rmoretti Thu, 2016-06-23 10:55 |
|
|
Error Interface analyser by jrcf » Thu, 2017-06-22 12:55 |
1 |
1,060 |
by smlewis Thu, 2017-06-22 13:31 |
|
|
Relaxing protein-RNA complexes by rkirchdo » Fri, 2018-08-03 08:50 |
1 |
753 |
by rmoretti Fri, 2018-08-24 11:28 |
|
|
Relax with a ligand is messing up the coordinates of the ligand by brspurri » Sat, 2015-01-24 12:39 |
1 |
1,891 |
by rmoretti Mon, 2015-01-26 12:15 |
|
|
Difference between movemap and -pivot_residues by aloshbau » Wed, 2016-02-24 13:21 |
1 |
1,379 |
by rmoretti Wed, 2016-02-24 14:39 |
|
|
weights for pH_protocol by fmerino » Wed, 2017-04-26 07:14 |
1 |
1,186 |
by rmoretti Thu, 2017-04-27 07:10 |
|
|
broker domain insertion by dhirajks » Sun, 2018-05-06 12:55 |
1 |
751 |
by rmoretti Fri, 2018-05-18 12:28 |
|
|
The relax qustion of Rosetta VIP by asbelx » Mon, 2019-06-10 07:52 |
1 |
582 |
by rmoretti Mon, 2019-06-24 14:42 |
|
|
Antibody Docking application by Maryam_tabasinezhad » Sat, 2015-09-05 09:58 |
1 |
1,572 |
by jadolfbr Wed, 2015-09-09 12:35 |
|
|
error--rosetta fragment‐based refinement protocol for refinement against EM density by gsuchunli » Mon, 2016-07-25 13:35 |
1 |
1,613 |
by gsuchunli Mon, 2016-07-25 13:56 |
|
|
MPdocking I_sc by jrcf » Mon, 2017-07-31 16:10 |
1 |
1,037 |
by rmoretti Thu, 2017-08-03 09:29 |
|
|
Membrane Abinitio modeling error by jkyan007 » Thu, 2020-10-29 03:30 |
1 |
269 |
by noahC_noahDo Tue, 2020-11-17 10:35 |
|
|
fold and dock protocol not working by ytao » Mon, 2012-11-26 15:33 |
1 |
1,749 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
submit_NGK.py not creating output files by nkato2 » Wed, 2013-08-28 23:37 |
1 |
1,817 |
by rmoretti Mon, 2014-04-21 06:48 |
|
|
why is talaris2014 scoring fuction not used with ligand docking? by banshee » Fri, 2016-09-09 01:19 |
1 |
1,328 |
by rmoretti Fri, 2016-09-09 07:47 |
|
|
Fastrelax problem by Pernille » Tue, 2014-06-17 08:59 |
1 |
1,384 |
by Pernille Fri, 2014-06-20 00:17 |
|
|
Error in a new docking by jrcf » Wed, 2017-05-17 19:26 |
1 |
1,936 |
by everyday847 Wed, 2017-05-17 20:03 |
|
|
'standard.wts' does not exist by almeida85 » Mon, 2020-09-14 02:26 |
1 |
328 |
by rmoretti Mon, 2020-09-14 06:36 |
|
|
Rosetta Holes by zsun12 » Wed, 2015-09-30 11:40 |
1 |
2,554 |
by rmoretti Mon, 2015-10-12 15:20 |
|
|
Rosetta scripts crash in CM workflow by jlburkhead » Tue, 2019-12-03 22:55 |
1 |
686 |
by danpf Fri, 2020-02-21 18:37 |
|
|
Problem with mpirun/mpiexec by ahansel » Fri, 2020-07-10 08:37 |
1 |
721 |
by rmoretti Fri, 2020-07-10 09:59 |
Log in to post new content in the forum.
