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Rosetta 3 - Applications
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score_jd2.linuxgccrelease documentation by fglaser » Mon, 2011-08-01 04:08 |
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2,781 |
by smlewis Mon, 2014-04-21 06:47 |
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VH-VL Orientation in antibody by sujigeorge1979 » Mon, 2019-06-17 01:23 |
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529 |
by jeliazkov Mon, 2019-06-17 06:03 |
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hybrid approach - comparative and ab initio modelling by eprates » Wed, 2019-03-20 11:58 |
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520 |
by rmoretti Fri, 2019-03-29 09:45 |
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Instructing design scripts to use noncanonical AA instead of canonical by zcrook » Tue, 2014-11-25 10:43 |
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1,235 |
by rmoretti Wed, 2014-11-26 07:51 |
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Modeling the structure of camel single domain antibody by Sunyp_IM » Mon, 2018-01-08 00:34 |
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1,145 |
by Sunyp_IM Mon, 2018-01-08 00:55 |
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Usage of the TaskOperations "RestrictToCDRsAndNeighbors" by johnnytam100 » Wed, 2019-04-10 02:58 |
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556 |
by rmoretti Wed, 2019-07-10 10:10 |
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Remodel: the pose does not have residue with chain=H, PDBnum=114 by lanselibai » Wed, 2019-12-25 13:35 |
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460 |
by lanselibai Fri, 2019-12-27 09:38 |
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Loop modeling: KIC with fragments producing unusual models by kamau » Mon, 2015-06-01 12:06 |
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1,345 |
by rmoretti Sat, 2015-06-20 20:07 |
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RosettaMatch outputs by mwfranklin » Tue, 2016-10-11 11:46 |
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1,228 |
by rmoretti Fri, 2016-10-14 08:56 |
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Problem passing a list of PDB files to minimize_with_cst by dolevrahat » Sun, 2018-11-18 16:13 |
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632 |
by rmoretti Wed, 2018-11-21 15:31 |
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FloppyTail vs. Remodel for linkers by attesor » Mon, 2014-07-07 08:36 |
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1,442 |
by smlewis Mon, 2014-07-07 11:58 |
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Error in Loop modeling and other queries by ashu4487 » Wed, 2016-05-11 18:23 |
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1,367 |
by rmoretti Fri, 2016-06-17 10:15 |
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"Angle constraint: 0-length bonds" error by purvi24 » Sun, 2019-07-28 10:09 |
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481 |
by rmoretti Mon, 2019-08-26 12:49 |
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Rosetta DNA - Protein-DNA scoring function and binding energy by tanoramb » Tue, 2012-05-08 14:00 |
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3,574 |
by smlewis Mon, 2014-04-21 06:47 |
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score application by Hongtham » Tue, 2014-12-23 06:38 |
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1,177 |
by rmoretti Fri, 2015-01-02 11:06 |
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Membrane Abinitio modeling by bharat_46010 » Mon, 2017-03-13 22:39 |
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794 |
by benhardy Wed, 2020-09-30 04:24 |
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missing atom number 5 atom name CB by ajaniharesh » Fri, 2019-04-26 12:08 |
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524 |
by rmoretti Fri, 2019-04-26 12:13 |
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fixing sequence during grafting in antibody_designer by COM » Fri, 2020-01-24 11:38 |
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373 |
by jadolfbr Tue, 2020-01-28 09:13 |
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molfile_to_params script error by pablogalazdavison » Tue, 2015-07-07 21:22 |
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1,550 |
by rmoretti Tue, 2015-07-14 14:59 |
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Threading with Ligand by ekwan » Thu, 2018-12-06 15:10 |
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588 |
by rmoretti Fri, 2019-03-29 13:21 |
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Error with RosettaAntibodyDesign when running antibody_designer.linuxgccrelease by bdzhh » Tue, 2019-09-17 17:02 |
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441 |
by jadolfbr Thu, 2019-09-19 08:53 |
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Ligand docking at specific orientation by ShiranBZ » Mon, 2020-04-13 20:46 |
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297 |
by matteoferla Mon, 2020-05-04 02:02 |
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Docking on mpi. by Pernille » Mon, 2014-07-28 08:40 |
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2,003 |
by rmoretti Mon, 2014-08-04 14:51 |
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how to pick fragments for a transmembrane protein by tevang » Mon, 2012-05-28 06:52 |
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1,472 |
by tevang Mon, 2014-04-21 06:47 |
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ROSETTALIGAND: How to prepare data to plot ROC curves using rosettaligand docking result??? by Ryhon Wang » Mon, 2016-01-04 22:36 |
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1,872 |
by rmoretti Tue, 2016-01-05 08:35 |
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Mutating phosphorylated residues to "canonical" residues and vice versa by ValentinaSora » Mon, 2019-05-20 05:58 |
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717 |
by rmoretti Wed, 2019-07-10 09:22 |
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remodel ERROR: unrecognized mm_atom_type_name RGU by daniloboskovic » Sat, 2020-02-22 11:55 |
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342 |
by daniloboskovic Tue, 2020-02-25 08:28 |
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Difference between relax and mimimize_with_cst by basvandenberg » Thu, 2012-02-09 00:16 |
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1,868 |
by rmoretti Mon, 2014-04-21 06:47 |
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Symmetric docking with multiple chains as asymmetric unit by sarah29 » Tue, 2013-11-05 20:24 |
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2,252 |
by rmoretti Mon, 2014-04-21 06:48 |
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Constraint generator by Alison_Yajie » Wed, 2020-06-17 20:14 |
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253 |
by Alison_Yajie Wed, 2020-06-17 20:35 |
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Ligand Docking with ARLS by cam11 » Thu, 2016-06-23 09:34 |
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1,230 |
by rmoretti Thu, 2016-06-23 10:55 |
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Error Interface analyser by jrcf » Thu, 2017-06-22 12:55 |
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964 |
by smlewis Thu, 2017-06-22 13:31 |
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Relaxing protein-RNA complexes by rkirchdo » Fri, 2018-08-03 08:50 |
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641 |
by rmoretti Fri, 2018-08-24 11:28 |
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error--rosetta fragment‐based refinement protocol for refinement against EM density by gsuchunli » Mon, 2016-07-25 13:35 |
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1,505 |
by gsuchunli Mon, 2016-07-25 13:56 |
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MPdocking I_sc by jrcf » Mon, 2017-07-31 16:10 |
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922 |
by rmoretti Thu, 2017-08-03 09:29 |
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Membrane Abinitio modeling error by jkyan007 » Thu, 2020-10-29 03:30 |
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114 |
by noahC_noahDo Tue, 2020-11-17 10:35 |
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Docking structures with ligands in cryo-EM maps by galushin » Wed, 2012-07-11 12:40 |
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3,435 |
by jadolfbr Mon, 2014-04-21 06:47 |
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Relax with a ligand is messing up the coordinates of the ligand by brspurri » Sat, 2015-01-24 12:39 |
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1,778 |
by rmoretti Mon, 2015-01-26 12:15 |
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Difference between movemap and -pivot_residues by aloshbau » Wed, 2016-02-24 13:21 |
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1,278 |
by rmoretti Wed, 2016-02-24 14:39 |
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weights for pH_protocol by fmerino » Wed, 2017-04-26 07:14 |
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1,061 |
by rmoretti Thu, 2017-04-27 07:10 |
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broker domain insertion by dhirajks » Sun, 2018-05-06 12:55 |
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648 |
by rmoretti Fri, 2018-05-18 12:28 |
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The relax qustion of Rosetta VIP by asbelx » Mon, 2019-06-10 07:52 |
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468 |
by rmoretti Mon, 2019-06-24 14:42 |
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Antibody Docking application by Maryam_tabasinezhad » Sat, 2015-09-05 09:58 |
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1,455 |
by jadolfbr Wed, 2015-09-09 12:35 |
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rosetta scores for mutated structures by harshkhare » Wed, 2011-11-23 09:30 |
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1,890 |
by rmoretti Mon, 2014-04-21 06:47 |
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fold and dock protocol not working by ytao » Mon, 2012-11-26 15:33 |
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1,658 |
by smlewis Mon, 2014-04-21 06:47 |
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submit_NGK.py not creating output files by nkato2 » Wed, 2013-08-28 23:37 |
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1,730 |
by rmoretti Mon, 2014-04-21 06:48 |
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why is talaris2014 scoring fuction not used with ligand docking? by banshee » Fri, 2016-09-09 01:19 |
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1,219 |
by rmoretti Fri, 2016-09-09 07:47 |
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Fastrelax problem by Pernille » Tue, 2014-06-17 08:59 |
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1,289 |
by Pernille Fri, 2014-06-20 00:17 |
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Error in a new docking by jrcf » Wed, 2017-05-17 19:26 |
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1,687 |
by everyday847 Wed, 2017-05-17 20:03 |
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'standard.wts' does not exist by almeida85 » Mon, 2020-09-14 02:26 |
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166 |
by rmoretti Mon, 2020-09-14 06:36 |
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protein-protein docking by cbala » Mon, 2011-04-18 09:15 |
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1,764 |
by smlewis Mon, 2014-04-21 06:47 |
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Rosetta Holes by zsun12 » Wed, 2015-09-30 11:40 |
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2,386 |
by rmoretti Mon, 2015-10-12 15:20 |
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Rosetta scripts crash in CM workflow by jlburkhead » Tue, 2019-12-03 22:55 |
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500 |
by danpf Fri, 2020-02-21 18:37 |
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Problem with mpirun/mpiexec by ahansel » Fri, 2020-07-10 08:37 |
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303 |
by rmoretti Fri, 2020-07-10 09:59 |
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Loop modeling/closure for many structures by sn » Mon, 2017-03-06 11:25 |
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849 |
by rmoretti Mon, 2017-03-06 12:39 |
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input file for loop modeling by Negarsardar » Tue, 2019-04-16 10:21 |
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542 |
by rmoretti Tue, 2019-04-16 11:07 |
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Place ligand in a pocket by sn » Fri, 2017-09-15 12:53 |
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887 |
by rmoretti Fri, 2017-09-15 13:11 |
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How to analyse multiple silent files from "Abinitiorelax" output to find best models? by Danielsebas » Tue, 2019-09-10 10:01 |
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377 |
by smlewis Mon, 2019-09-16 12:22 |
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creating a model using a base pdb and extending a chain by rlwoltz » Fri, 2013-07-12 15:35 |
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1,863 |
by nawsad Mon, 2014-04-21 06:48 |
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rosetta 3.3 - antibody by ron amon » Mon, 2014-07-21 00:44 |
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1,522 |
by rmoretti Mon, 2014-07-21 10:51 |
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References where Rosetta is used to compute ddG of binding after mutation? by cossio » Tue, 2015-03-17 05:13 |
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1,755 |
by rmoretti Wed, 2015-03-25 11:33 |
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modeling missing linker in a protein by Isaure de Beauchene » Fri, 2012-05-11 10:13 |
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2,517 |
by smlewis Mon, 2014-04-21 06:47 |
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Fixing part of a ligand in dock-design by hssnzdh2 » Mon, 2015-11-23 17:14 |
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1,277 |
by rmoretti Tue, 2015-11-24 16:16 |
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loopmodel issue by chiendarret » Fri, 2012-01-27 00:51 |
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2,205 |
by smlewis Mon, 2014-04-21 06:47 |
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Relax with RDC data gives segmentation fault by sn » Mon, 2018-07-23 11:39 |
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641 |
by rmoretti Fri, 2018-08-03 07:54 |
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I need some help for using pHDock applications(histidine protonation / pH-dependent binding) by leygkn » Tue, 2020-09-22 18:40 |
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141 |
by leygkn Tue, 2020-09-22 22:46 |
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Incorporating iron-sulfur cluster into ROSETTA applications by Derek Smith » Thu, 2014-08-14 23:12 |
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1,671 |
by rmoretti Fri, 2014-08-15 08:06 |
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ambiguous constraints by shrutikhare » Mon, 2014-05-12 04:42 |
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2,229 |
by rmoretti Mon, 2014-05-12 08:25 |
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How to build disulfide bond between two cysteine, i.e. change two "-SH" (sulfydryl) into "-S-S-"? by lanselibai » Sat, 2015-01-17 11:19 |
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2,042 |
by lanselibai Wed, 2015-01-21 02:40 |
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Coding denovo prediction from density maps in PyRosetta by ahmadkhalifa » Tue, 2018-04-10 11:43 |
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658 |
by rmoretti Tue, 2018-04-10 15:29 |
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ProteinInterfaceDesign algorithm questions by tsztain » Mon, 2019-02-18 14:10 |
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676 |
by rmoretti Sun, 2019-08-25 19:15 |
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denovo modelling on a virus-coat protein dimer by aseem121 » Wed, 2019-10-16 06:55 |
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435 |
by danpf Wed, 2019-10-16 13:03 |
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Packstat application output by Vedasheersh » Mon, 2017-07-03 02:45 |
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967 |
by rmoretti Mon, 2017-07-03 09:17 |
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hbond_sr_bb and hbond_lr_bb for different chains by tylerborrman » Tue, 2020-10-13 13:41 |
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133 |
by rmoretti Wed, 2020-10-14 08:25 |
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Fragment Files by nkemjika » Fri, 2011-07-22 15:11 |
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2,097 |
by dgront Mon, 2014-04-21 06:47 |
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Add missing residues in loop modeling by exchhattu » Thu, 2013-06-20 17:38 |
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2,615 |
by smlewis Mon, 2014-04-21 06:48 |
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Output structures from docking_prepack_protocol: initial__*.pdb vs prepack__*.pdb, which one should I send to docking_protocol? by cossio » Thu, 2015-02-05 07:10 |
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1,428 |
by rmoretti Mon, 2015-02-09 12:33 |
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Enzyme Design FlexBB Protocol Bug: DNA/RNA handling by kettner » Fri, 2019-06-14 14:16 |
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870 |
by rmoretti Mon, 2019-06-24 13:46 |
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Snugdock_error by luicui » Thu, 2017-02-09 21:06 |
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859 |
by smlewis Thu, 2017-02-09 21:50 |
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Warning: Fold tree is not set properly for density scoring by ahansel » Mon, 2020-07-13 10:50 |
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231 |
by danpf Tue, 2020-07-14 10:27 |
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Using different number of 9-mers (UPDATED) by JadAbbass » Mon, 2017-08-28 07:20 |
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959 |
by rmoretti Mon, 2017-09-04 10:33 |
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docking with capping groups by xavierfradera » Sun, 2018-11-04 16:17 |
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553 |
by maral.adeli-kou... Wed, 2020-01-22 12:41 |
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Undesirable behaviour of PoseFromSFRBuilder regarding Hydrogen atoms by Corvin » Wed, 2020-12-02 04:00 |
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27 |
by rmoretti Wed, 2020-12-02 07:27 |
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Question on restraining receptor symmetry when docking ligand by subha » Fri, 2018-07-06 21:59 |
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601 |
by rmoretti Fri, 2018-08-03 08:16 |
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RosettaMatch by xingqing326 » Mon, 2019-07-22 13:14 |
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578 |
by rmoretti Mon, 2019-08-26 12:57 |
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Interface Analyzer Segmentation Fault by h_trasatti » Tue, 2017-02-21 12:48 |
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1,252 |
by smlewis Tue, 2017-02-21 14:10 |
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ERROR: unrecognized residue name 'GLY_p:RepulsiveOnly' by smiruthi » Mon, 2011-12-12 14:27 |
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1,955 |
by rmoretti Mon, 2014-04-21 06:47 |
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Design with limited number of aminoacids at given position by sdh_h » Sun, 2016-12-04 03:44 |
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1,012 |
by smlewis Thu, 2016-12-08 15:50 |
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dssp by MA » Thu, 2017-10-05 09:34 |
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852 |
by rmoretti Tue, 2017-10-10 09:54 |
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Flexible docking using rosetta density-fitting for DNA by helm » Thu, 2012-06-14 23:43 |
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1,879 |
by smlewis Mon, 2014-04-21 06:47 |
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No interface for protein - Interface Analyzer by aloshbau » Tue, 2013-05-21 21:00 |
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2,029 |
by jarod Mon, 2014-04-21 06:47 |
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splitfile.py by saladi » Fri, 2018-03-30 10:31 |
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766 |
by rmoretti Tue, 2018-04-10 15:34 |
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How can I model ligands in comparative modeling by Morrian_Lynn » Thu, 2020-02-20 09:57 |
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339 |
by danpf Fri, 2020-02-21 17:05 |
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problem with modelling of protein (140 and 150 residues respectively) by krlitros87 » Wed, 2014-10-22 09:39 |
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1,309 |
by rmoretti Thu, 2014-10-23 13:55 |
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Homology modelling applies alignment wrong by bernhardcl » Thu, 2015-08-06 09:39 |
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1,256 |
by bernhardcl Tue, 2015-08-11 09:11 |
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comparative modeling of a homodimer by banshee » Mon, 2017-01-09 18:34 |
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1,252 |
by rmoretti Wed, 2017-01-11 13:00 |
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Missing atoms and cannot find atom pose when refining ligand position with EM density by BuddySphinx » Mon, 2018-12-31 16:22 |
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993 |
by rmoretti Fri, 2019-03-29 13:06 |
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Enzyme design output silent file and score file by deltag » Fri, 2012-09-28 13:07 |
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1,587 |
by rmoretti Mon, 2014-04-21 06:47 |
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Ligand creation by Prasanth Kumar » Fri, 2013-08-02 09:48 |
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1,691 |
by rmoretti Mon, 2014-04-21 06:48 |
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Ligand docking: ERROR: set_atom_base: atoms must be bonded! by mengzhang » Mon, 2014-05-12 12:36 |
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1,742 |
by rmoretti Mon, 2014-05-12 15:08 |
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