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Rosetta 3 - Applications
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Remodel's problem in treatment with non-protein residues by Corvin » Mon, 2021-12-13 09:07 |
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1,007 |
by Corvin Mon, 2021-12-13 09:07 |
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Error with xml script by almeida85 » Tue, 2023-03-28 01:53 |
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632 |
by almeida85 Tue, 2023-05-16 01:00 |
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Pepspec Anchor Dock by Soler » Fri, 2020-09-18 08:09 |
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1,051 |
by Soler Fri, 2020-09-18 08:09 |
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Symmetry definition question by mrconde96 » Sun, 2022-10-02 05:34 |
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1,407 |
by mrconde96 Sun, 2022-10-02 05:34 |
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Patch to impose tetrahedral geometry on backbone O atom by georg » Thu, 2021-04-08 09:30 |
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783 |
by georg Thu, 2021-04-08 09:31 |
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RemodelMover and Input Pose by ozyo » Tue, 2020-12-29 09:41 |
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926 |
by ozyo Tue, 2020-12-29 09:41 |
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I need help with cst file the paper: De Novo Computational Design of Retro-Aldol Enzymes by Wenithor » Thu, 2022-01-06 12:20 |
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1,129 |
by Wenithor Thu, 2022-01-06 12:20 |
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Simple_cycpep_predict with crosslinker BBMB by Ken » Tue, 2023-05-09 08:52 |
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508 |
by Ken Tue, 2023-05-09 08:52 |
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Domain insertion with Non-CAA by mwfranklin » Mon, 2017-01-16 12:30 |
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1,816 |
by mwfranklin Mon, 2017-01-16 12:30 |
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Segment File Gen - no ouput by CATarr » Wed, 2019-10-09 19:05 |
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933 |
by CATarr Wed, 2019-10-09 19:05 |
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RosettaAntibody - No matching templates for CDR1 by agctomer » Tue, 2021-01-19 22:45 |
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970 |
by agctomer Tue, 2021-01-19 22:45 |
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Generating the 3-mer and 9-mer fragments by Prasoon » Wed, 2022-02-09 09:04 |
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1,238 |
by Prasoon Wed, 2022-02-09 09:04 |
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Memory Leak in FragmentPicker.cxx11thread application by Corvin » Tue, 2023-07-11 06:04 |
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349 |
by Corvin Thu, 2023-07-13 05:30 |
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Flexpepdock I_hb scoring term by mbakalar » Fri, 2018-08-31 13:05 |
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1,183 |
by mbakalar Fri, 2018-08-31 13:06 |
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General question regarding ligand-docking by Alison_Yajie » Thu, 2020-05-07 09:48 |
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835 |
by Alison_Yajie Thu, 2020-05-07 09:48 |
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Modelling of multi-component symmetrical structures by LanMei » Wed, 2020-10-07 09:58 |
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1,039 |
by LanMei Wed, 2020-10-07 09:58 |
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Problem with Scoring function and PlaceStub mover by a-eatemadi@razi... » Sat, 2018-04-07 09:22 |
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1,210 |
by a-eatemadi@razi... Sat, 2018-04-07 09:24 |
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What is interface_cutoff_distance? And why did my residues outside this value get designed? by chrisHKL » Fri, 2020-02-28 14:52 |
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1,069 |
by chrisHKL Fri, 2020-02-28 14:52 |
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clustering output file has few structures by fabiotrovato » Mon, 2020-08-17 11:37 |
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802 |
by fabiotrovato Mon, 2020-08-17 11:37 |
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Error Run Blueprint File by ileanexis » Thu, 2024-03-07 10:28 |
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148 |
by ileanexis Thu, 2024-03-07 10:28 |
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fragment_picker bug by David Hoover » Wed, 2012-02-29 11:43 |
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1,808 |
by David Hoover Mon, 2014-04-21 06:47 |
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Is it possible to restart the ddg_monomer.linuxgccrelease? by lanselibai » Mon, 2015-09-07 03:46 |
1 |
2,176 |
by rmoretti Wed, 2015-09-09 12:01 |
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Rosetta failed in making score.fsc by josdee » Sun, 2017-02-05 21:58 |
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1,996 |
by smlewis Mon, 2017-02-06 06:57 |
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different value of score from rna_denovo and rna_score? by yikanzhang » Wed, 2021-02-03 07:17 |
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1,153 |
by CameronJA Tue, 2021-06-15 20:02 |
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Alanine Scanning by gjbartlett » Mon, 2013-08-05 07:02 |
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3,734 |
by rmoretti Mon, 2014-04-21 06:48 |
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Enzyme Design with additional covalent backbone bonds by mwfranklin » Wed, 2016-08-03 10:23 |
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2,561 |
by rmoretti Mon, 2016-09-05 11:29 |
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Getting error with Rosetta "antibody.linuxgccrelease" command by Sunyp_IM » Mon, 2017-08-07 19:40 |
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2,589 |
by smlewis Tue, 2017-08-15 23:19 |
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can anyone help me correct this script to do alanine scanning by xinmiaohe » Mon, 2019-08-26 17:23 |
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1,753 |
by xinmiaohe Mon, 2019-08-26 18:16 |
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Creating model of 89-90 residues by ab initio methodology-help by krlitros87 » Sun, 2014-05-25 12:12 |
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2,310 |
by rmoretti Mon, 2014-05-26 09:29 |
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Membrane ab-initio modelling of a beta-strand by hzhekova » Mon, 2019-06-10 14:22 |
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1,579 |
by rmoretti Mon, 2019-06-24 14:39 |
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density scoring by Tianyang89 » Sat, 2020-08-29 04:54 |
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1,889 |
by danpf Sun, 2020-08-30 22:23 |
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Error in score funtion "hack_elec 0.42" by intomybioverse » Sun, 2024-03-17 06:33 |
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173 |
by rmoretti Mon, 2024-03-18 08:55 |
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Files for Spatial Constraints by Derek » Tue, 2016-04-12 01:00 |
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2,013 |
by Derek Wed, 2016-04-27 01:31 |
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Partial Active Site Design for a Novel Substrate by Derek » Wed, 2017-05-17 19:41 |
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1,837 |
by rmoretti Thu, 2017-05-18 13:51 |
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Calbur vs Energy Based Clustering by Swillard » Sun, 2018-07-01 13:24 |
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1,925 |
by rmoretti Fri, 2018-08-03 08:26 |
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kcenters_clustering_of_fragments by bjharris » Mon, 2019-07-01 16:16 |
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1,561 |
by bjharris Wed, 2020-07-01 23:25 |
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number of structures in homology modeling for cluster analysis by pdbb » Fri, 2013-04-12 08:52 |
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2,692 |
by smlewis Mon, 2014-04-21 06:47 |
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ddg_monomer "ERROR: seqpos >= 1" by cossio » Fri, 2015-10-02 12:20 |
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2,327 |
by rmoretti Fri, 2015-10-02 12:30 |
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manually defining CDRs in antibody modelling by gard.nelson » Fri, 2020-07-10 13:31 |
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1,323 |
by brspurri Wed, 2021-01-20 08:11 |
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ProteinInterfaceMS by rbjacob » Wed, 2018-10-24 11:31 |
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1,586 |
by rmoretti Wed, 2018-11-21 15:10 |
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polymer docking using rosetta scripts by syntekabio2019 » Fri, 2020-11-27 01:51 |
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1,259 |
by rmoretti Fri, 2020-11-27 10:47 |
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docking with constraints by talavera » Tue, 2013-05-07 01:50 |
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4,108 |
by rmoretti Mon, 2014-04-21 06:47 |
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FloppyTail options error by DmitriiN » Fri, 2016-11-11 02:54 |
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1,898 |
by smlewis Fri, 2016-11-11 08:33 |
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LoopModeler mover unable to determine cut point by gszwabowski » Mon, 2020-06-01 13:12 |
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1,640 |
by matteoferla Thu, 2020-07-02 07:27 |
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InterfaceAnalyzer -resfile by gw » Wed, 2011-11-02 16:01 |
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2,960 |
by smlewis Mon, 2014-04-21 06:47 |
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PDB moves after relaxing by Hr13b » Fri, 2018-07-27 13:12 |
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1,546 |
by smlewis Fri, 2018-07-27 13:32 |
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can remodel add loops in one chain in multichain PDB structure? by ksteczk » Fri, 2020-05-01 06:26 |
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1,489 |
by matteoferla Mon, 2020-05-04 01:43 |
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Binding energy contribution broken down by residue by brspurri » Tue, 2013-07-23 12:47 |
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2,887 |
by rmoretti Mon, 2014-04-21 06:48 |
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cluster error by sudhar » Fri, 2011-06-17 05:58 |
1 |
3,043 |
by rmoretti Mon, 2014-04-21 06:47 |
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score_jd2 errors out with: ERROR: [ERROR] Error opening RBSeg file 'batch_000065_000059' by sn » Fri, 2017-03-24 12:26 |
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1,913 |
by rmoretti Fri, 2017-03-24 13:39 |
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protein interction design by Negarsardar » Wed, 2019-05-15 12:01 |
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1,529 |
by rmoretti Wed, 2019-07-10 09:24 |
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get an increased energy after energy minimization when using different score functions for repacking and energy minimization by xinmiaohe » Fri, 2020-02-07 11:59 |
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1,443 |
by xinmiaohe Fri, 2020-02-07 13:52 |
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Inquiry about MPI-Rosetta: Issue with -nstruct Parameter by serena » Wed, 2024-01-24 00:59 |
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300 |
by rmoretti Wed, 2024-01-24 08:46 |
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ArchiveManager -- spinning down by Marius1987 » Fri, 2016-12-23 03:10 |
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1,903 |
by smlewis Fri, 2016-12-23 07:04 |
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Abinitio error: std::out_of_range: basic_string by Harley Worthy » Tue, 2017-10-31 15:20 |
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2,273 |
by Harley Worthy Thu, 2017-11-02 08:53 |
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how to "rescore" the models using lowest energy model from rosetta run as native, for RMSD vs Score plot? by Danielsebas » Tue, 2019-09-24 03:51 |
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1,654 |
by smlewis Tue, 2019-09-24 12:43 |
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cluster docked pdbs by kwu030 » Wed, 2023-06-14 22:48 |
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648 |
by rmoretti Wed, 2023-06-28 12:36 |
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Ab-initio modeling on part of the protein by xiayanlawrence » Thu, 2013-12-19 07:45 |
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3,521 |
by rmoretti Mon, 2014-04-21 06:48 |
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latest version of rosetta unable to build models by pramod » Mon, 2014-11-03 11:31 |
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2,926 |
by rmoretti Tue, 2014-11-04 10:33 |
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RosettaRemodel: ERROR: 'Replacing' an atom which doesn't currently exist. by kamau » Fri, 2017-12-01 08:42 |
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1,771 |
by kamau Wed, 2017-12-13 14:31 |
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ERROR: ResidueType::add_ring: Requested atoms don't exist in this ResidueType! by walidabualafia » Thu, 2023-07-20 09:44 |
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472 |
by rmoretti Thu, 2023-07-20 10:08 |
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Adding 'virtual' residues for N- and C-terminal optimisation by Derek Smith » Thu, 2014-08-14 23:18 |
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2,388 |
by jadolfbr Fri, 2014-10-31 09:00 |
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How to calculate dG? by yperez » Mon, 2012-10-22 07:28 |
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3,161 |
by smlewis Mon, 2014-04-21 06:47 |
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Adding positional restraints to pure RNA system in DRRAFTER and rna_denovo by zharmad » Fri, 2019-08-23 01:16 |
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1,457 |
by everyday847 Fri, 2019-08-23 04:08 |
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Protein-DNA Docking using RosettaScripts? by brspurri » Fri, 2013-06-07 09:06 |
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4,560 |
by rmoretti Mon, 2014-04-21 06:48 |
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RosettaCM/hybridize by kywei » Wed, 2021-04-28 09:56 |
1 |
1,096 |
by vmulligan Wed, 2021-04-28 12:59 |
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hybrid approach - comparative and ab initio modelling by eprates » Wed, 2019-03-20 11:58 |
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1,544 |
by rmoretti Fri, 2019-03-29 09:45 |
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Rosetta Remodel - Error in core::conformation::Conformation::residue(): The sequence position requested was 0. by daniloboskovic » Fri, 2019-11-08 08:24 |
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3,350 |
by Payne Tue, 2022-06-21 07:25 |
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Loopmodel with DNA has no energy score by Nicky_Learning_... » Sun, 2015-05-10 19:31 |
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2,346 |
by rmoretti Mon, 2015-05-25 12:30 |
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VH-VL Orientation in antibody by sujigeorge1979 » Mon, 2019-06-17 01:23 |
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1,816 |
by jeliazkov Mon, 2019-06-17 06:03 |
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FloppyTail vs. Remodel for linkers by attesor » Mon, 2014-07-07 08:36 |
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2,363 |
by smlewis Mon, 2014-07-07 11:58 |
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Error in Loop modeling and other queries by ashu4487 » Wed, 2016-05-11 18:23 |
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2,289 |
by rmoretti Fri, 2016-06-17 10:15 |
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"Angle constraint: 0-length bonds" error by purvi24 » Sun, 2019-07-28 10:09 |
1 |
1,678 |
by rmoretti Mon, 2019-08-26 12:49 |
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Instructing design scripts to use noncanonical AA instead of canonical by zcrook » Tue, 2014-11-25 10:43 |
1 |
2,177 |
by rmoretti Wed, 2014-11-26 07:51 |
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Modeling the structure of camel single domain antibody by Sunyp_IM » Mon, 2018-01-08 00:34 |
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2,340 |
by Sunyp_IM Mon, 2018-01-08 00:55 |
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Usage of the TaskOperations "RestrictToCDRsAndNeighbors" by johnnytam100 » Wed, 2019-04-10 02:58 |
1 |
1,668 |
by rmoretti Wed, 2019-07-10 10:10 |
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Remodel: the pose does not have residue with chain=H, PDBnum=114 by lanselibai » Wed, 2019-12-25 13:35 |
1 |
2,285 |
by lanselibai Fri, 2019-12-27 09:38 |
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Should I be stripping water molecules from my input structure for Rosetta Design? by chrisHKL » Wed, 2021-03-24 14:22 |
1 |
1,186 |
by smlewis Wed, 2021-03-24 14:59 |
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Disulfidize- "Extra content at the end of the document" by ldlamini » Tue, 2022-05-17 02:37 |
1 |
1,165 |
by rmoretti Tue, 2022-05-17 07:29 |
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Loop modeling: KIC with fragments producing unusual models by kamau » Mon, 2015-06-01 12:06 |
1 |
2,302 |
by rmoretti Sat, 2015-06-20 20:07 |
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RosettaMatch outputs by mwfranklin » Tue, 2016-10-11 11:46 |
1 |
2,309 |
by rmoretti Fri, 2016-10-14 08:56 |
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Problem passing a list of PDB files to minimize_with_cst by dolevrahat » Sun, 2018-11-18 16:13 |
1 |
1,922 |
by rmoretti Wed, 2018-11-21 15:31 |
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AbinitioRelax Disulfide Bonds are not being retained by brspurri » Wed, 2011-09-28 13:55 |
1 |
4,484 |
by parmef Mon, 2014-04-21 06:47 |
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Ligand docking at specific orientation by ShiranBZ » Mon, 2020-04-13 20:46 |
1 |
1,273 |
by matteoferla Mon, 2020-05-04 02:02 |
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Old Knotfind algorithm by Martin Floor » Thu, 2022-09-22 07:28 |
1 |
1,193 |
by rmoretti Fri, 2022-09-23 09:38 |
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Docking on mpi. by Pernille » Mon, 2014-07-28 08:40 |
1 |
3,030 |
by rmoretti Mon, 2014-08-04 14:51 |
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score application by Hongtham » Tue, 2014-12-23 06:38 |
1 |
2,084 |
by rmoretti Fri, 2015-01-02 11:06 |
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Membrane Abinitio modeling by bharat_46010 » Mon, 2017-03-13 22:39 |
1 |
1,790 |
by benhardy Wed, 2020-09-30 04:24 |
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missing atom number 5 atom name CB by ajaniharesh » Fri, 2019-04-26 12:08 |
1 |
1,923 |
by rmoretti Fri, 2019-04-26 12:13 |
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fixing sequence during grafting in antibody_designer by COM » Fri, 2020-01-24 11:38 |
1 |
1,445 |
by jadolfbr Tue, 2020-01-28 09:13 |
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the results obtained after docking using RosettaDock and ZDOCK by aha » Thu, 2024-01-04 21:13 |
1 |
354 |
by rmoretti Thu, 2024-01-11 14:39 |
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molfile_to_params script error by pablogalazdavison » Tue, 2015-07-07 21:22 |
1 |
2,546 |
by rmoretti Tue, 2015-07-14 14:59 |
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Threading with Ligand by ekwan » Thu, 2018-12-06 15:10 |
1 |
1,631 |
by rmoretti Fri, 2019-03-29 13:21 |
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Error with RosettaAntibodyDesign when running antibody_designer.linuxgccrelease by bdzhh » Tue, 2019-09-17 17:02 |
1 |
1,520 |
by jadolfbr Thu, 2019-09-19 08:53 |
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PyIgClassify cannot renumber and label CDRs my Nanobody-Antigen complex for RabD by WBNeT » Fri, 2023-07-07 10:58 |
1 |
539 |
by jadolfbr Mon, 2023-07-10 09:05 |
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Ligand Docking with ARLS by cam11 » Thu, 2016-06-23 09:34 |
1 |
2,214 |
by rmoretti Thu, 2016-06-23 10:55 |
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Problem with AtomPair constraint by jarek » Tue, 2012-10-09 07:28 |
1 |
2,435 |
by smlewis Mon, 2014-04-21 06:47 |
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Error Interface analyser by jrcf » Thu, 2017-06-22 12:55 |
1 |
1,922 |
by smlewis Thu, 2017-06-22 13:31 |
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Relaxing protein-RNA complexes by rkirchdo » Fri, 2018-08-03 08:50 |
1 |
1,685 |
by rmoretti Fri, 2018-08-24 11:28 |
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ROSETTALIGAND: How to prepare data to plot ROC curves using rosettaligand docking result??? by Ryhon Wang » Mon, 2016-01-04 22:36 |
1 |
3,172 |
by rmoretti Tue, 2016-01-05 08:35 |
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