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Rosetta 3 - Applications

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Normal topic score_jd2 errors out with: ERROR: [ERROR] Error opening RBSeg file 'batch_000065_000059'
by sn » Fri, 2017-03-24 12:26
1
1,851 by rmoretti
Fri, 2017-03-24 13:39
Normal topic Calbur vs Energy Based Clustering
by Swillard » Sun, 2018-07-01 13:24
1
1,854 by rmoretti
Fri, 2018-08-03 08:26
Normal topic Error Interface analyser
by jrcf » Thu, 2017-06-22 12:55
1
1,859 by smlewis
Thu, 2017-06-22 13:31
Normal topic Is native.pdb necess for fragment_picker?
by ylwang » Thu, 2020-03-12 00:57
2
1,860 by ylwang
Thu, 2020-03-12 20:42
Normal topic Any progress on getting intermediate structures during a design?
by broomsday » Mon, 2020-03-16 06:46
2
1,867 by vmulligan
Tue, 2020-03-17 11:35
Normal topic Comparing a prediction to the native structure and calculate RMSD for RNA
by danwolf_33 » Thu, 2023-02-09 09:32
0
1,870 by danwolf_33
Thu, 2023-02-09 09:34
Normal topic Folding and Docking using Symmetry
by danielles » Wed, 2012-09-12 11:32
0
1,872 by danielles
Mon, 2014-04-21 06:47
Normal topic blast database error
by jessye » Sun, 2017-12-03 23:59
1
1,889 by smlewis
Mon, 2017-12-04 12:18
Normal topic OptimizeMembranePositionMover - This element is not expected
by bjharris » Wed, 2020-07-01 23:21
2
1,895 by bjharris
Thu, 2020-07-02 11:09
Normal topic Generating non-redundat dataset for loop models
by dario.corrada » Wed, 2016-03-09 03:00
1
1,900 by smlewis
Wed, 2016-03-09 04:11
Normal topic Enzyme Design FlexBB Protocol Bug: DNA/RNA handling
by kettner » Fri, 2019-06-14 14:16
1
1,902 by rmoretti
Mon, 2019-06-24 13:46
Normal topic minimize_with_cst and convert_to_cst_file for ddG_monomer issues/confusion
by Kharlamov1317a » Mon, 2020-09-21 08:46
1
1,902 by Kharlamov1317a
Wed, 2020-10-07 08:26
Normal topic Design with limited number of aminoacids at given position
by sdh_h » Sun, 2016-12-04 03:44
1
1,907 by smlewis
Thu, 2016-12-08 15:50
Normal topic antibody modeling error
by mxp » Mon, 2019-09-16 18:29
2
1,908 by mxp
Mon, 2019-09-23 01:40
Normal topic Using residue patches in AbinitioRelax
by kent » Fri, 2018-11-02 11:19
1
1,908 by rmoretti
Wed, 2018-11-21 15:40
Normal topic Rosetta Ligand Ensemble
by malfonsoprieto » Wed, 2021-05-26 10:21
3
1,919 by vizcarra
Thu, 2021-08-26 10:16
Normal topic Loop modeling with constraints
by agctomer » Sat, 2021-03-20 03:53
3
1,921 by agctomer
Thu, 2021-04-08 07:37
Normal topic Imitating induced fit protocol in SymDock2 without any symmetry constraints
by chenna » Fri, 2020-02-14 01:35
2
1,923 by chenna
Wed, 2020-03-04 03:24
Normal topic Rosetta failed in making score.fsc
by josdee » Sun, 2017-02-05 21:58
1
1,924 by smlewis
Mon, 2017-02-06 06:57
Normal topic UnfoldedStateEnergyCalculator MPI Error
by colin.walsh.brown » Mon, 2017-11-13 09:43
1
1,926 by smlewis
Mon, 2017-11-13 10:43
Normal topic DockingProtocol
by Soler » Fri, 2022-02-11 00:12
3
1,927 by gezmi
Tue, 2022-02-15 21:47
Normal topic make_fragments.pl error
by almeida85 » Mon, 2020-08-31 04:39
2
1,927 by almeida85
Tue, 2020-09-01 01:29
Normal topic Using different number of 9-mers (UPDATED)
by JadAbbass » Mon, 2017-08-28 07:20
1
1,928 by rmoretti
Mon, 2017-09-04 10:33
Normal topic Question about fastsaxs and saxs_score
by orionshih » Thu, 2019-06-13 02:30
2
1,929 by orionshih
Wed, 2019-06-26 03:54
Normal topic docking parse error
by dave » Tue, 2018-12-04 08:41
1
1,938 by rmoretti
Tue, 2018-12-04 08:55
Normal topic Protein/Protein Ddg demo: How to write predicted mutant structures?
by cossio » Wed, 2015-11-04 20:14
1
1,938 by rmoretti
Tue, 2015-11-10 11:10
Normal topic The usage of antibody_H3.linuxgccrelease
by Sunyp_IM » Thu, 2020-05-28 22:50
2
1,945 by Sunyp_IM
Thu, 2020-06-04 08:20
Normal topic Fast relax not working
by eyong123 » Fri, 2017-04-21 06:06
1
1,949 by rmoretti
Fri, 2017-04-21 07:41
Normal topic XML validation failing
by mb0261 » Fri, 2023-04-14 14:53
11
1,954 by mb0261
Mon, 2023-04-17 17:38
Normal topic Model two domain protein
by sn » Sat, 2017-05-06 13:21
1
1,955 by rmoretti
Mon, 2017-05-15 08:54
Normal topic Files for Spatial Constraints
by Derek » Tue, 2016-04-12 01:00
1
1,956 by Derek
Wed, 2016-04-27 01:31
Normal topic cluster,how to get the statistic data
by MajorID » Wed, 2011-06-08 09:20
0
1,965 by MajorID
Mon, 2014-04-21 06:47
Normal topic MPdocking I_sc
by jrcf » Mon, 2017-07-31 16:10
1
1,965 by rmoretti
Thu, 2017-08-03 09:29
Normal topic heads up for constraints using GAUSSIANFUNC
by attesor » Thu, 2015-10-22 07:30
1
1,966 by smlewis
Thu, 2015-10-22 08:04
Normal topic is it necessary to always run relax before any Rosetta
by mainzer » Fri, 2019-04-12 01:35
1
1,970 by rmoretti
Wed, 2019-07-10 09:47
Normal topic Rosetta fragment tools installation error
by Danielsebas » Thu, 2019-08-29 02:17
2
1,973 by Danielsebas
Sun, 2019-09-01 02:38
Normal topic Centroid mode minimization
by Martin Floor » Tue, 2020-01-21 07:34
2
1,981 by Martin Floor
Tue, 2020-01-21 11:15
Normal topic error: Unable to open weights/patch file in using ddg_monomer.linuxgccrelease
by xinmiaohe » Thu, 2020-01-30 22:09
1
1,983 by xinmiaohe
Fri, 2020-01-31 08:23
Normal topic not knowing which one of three ways to run rosettascript
by xinmiaohe » Tue, 2020-10-13 13:52
2
1,986 by xinmiaohe
Mon, 2020-10-19 13:18
Normal topic How to Perform point mutations with NCAA
by Subhrodeep Saha » Tue, 2021-06-22 02:05
2
1,989 by dnamkr
Fri, 2022-04-22 17:00
Normal topic Place ligand in a pocket
by sn » Fri, 2017-09-15 12:53
1
2,005 by rmoretti
Fri, 2017-09-15 13:11
Normal topic building a protein-dna homology model via cm_rosetta
by y_atsmonraz » Wed, 2021-10-20 23:11
4
2,007 by y_atsmonraz
Tue, 2021-11-02 01:47
Normal topic De novo structure building with medium resolution map
by BuddySphinx » Tue, 2019-07-02 09:07
2
2,009 by BuddySphinx
Tue, 2019-07-02 12:03
Normal topic RosettaDock 4.0 ambiguous ERROR
by sam_dc » Fri, 2022-03-18 09:36
3
2,010 by rmoretti
Tue, 2022-03-22 09:10
Normal topic reporting bugs? (erraser in rosetta 3.10)
by meyer » Fri, 2018-12-14 09:40
2
2,011 by everyday847
Fri, 2019-03-29 13:13
Normal topic "make" error in "pdb2vall/structure_profile_scripts/DEPTH-CLONE-2.8.7"
by Danielsebas » Mon, 2019-09-02 08:14
2
2,014 by Danielsebas
Sun, 2019-09-08 02:08
Normal topic No output with docking full protocol
by JulienO » Mon, 2016-05-30 02:16
1
2,015 by rmoretti
Fri, 2016-06-17 10:24
Normal topic score application
by Hongtham » Tue, 2014-12-23 06:38
1
2,025 by rmoretti
Fri, 2015-01-02 11:06
Normal topic GrowLigand
by allan.ferrari » Sat, 2019-10-19 05:32
2
2,035 by allan.ferrari
Tue, 2019-11-05 16:52
Normal topic Resfile as a input for InterfaceAnalyzer
by palak8669 » Sun, 2015-06-07 21:46
1
2,042 by smlewis
Mon, 2015-06-08 06:35
Normal topic Comparative modeling of metalloproteins
by ctqwong » Sun, 2020-07-12 13:51
3
2,058 by ctqwong
Mon, 2020-07-27 01:48
Normal topic Rosetta antibody- modeling in the presense of an antigen
by agctomer » Mon, 2021-02-01 03:19
4
2,060 by nannemdp
Wed, 2021-02-03 08:52
Normal topic error--rosetta fragment‐based refinement protocol for refinement against EM density
by gsuchunli » Wed, 2016-07-06 10:35
1
2,072 by rmoretti
Tue, 2016-07-12 08:56
Normal topic Homology modelling applies alignment wrong
by bernhardcl » Thu, 2015-08-06 09:39
1
2,075 by bernhardcl
Tue, 2015-08-11 09:11
Normal topic CartesianRefiner compilation problem
by DmitriiN » Tue, 2015-12-15 08:52
1
2,077 by rmoretti
Tue, 2015-12-15 09:48
Normal topic Model monomer to fit cryo density map of a filament
by BuddySphinx » Wed, 2018-12-12 18:58
2
2,084 by BuddySphinx
Sun, 2018-12-30 16:49
Normal topic Packstat application output
by Vedasheersh » Mon, 2017-07-03 02:45
1
2,084 by rmoretti
Mon, 2017-07-03 09:17
Normal topic Rosetta_scripts error, Got some signal... It is:6
by jhm13c » Fri, 2017-04-14 14:05
1
2,084 by rmoretti
Sat, 2017-04-15 13:30
Normal topic How to change the axes of "-spin" in docking_protocol
by Zehui Zhou » Mon, 2023-02-13 22:06
0
2,085 by Zehui Zhou
Mon, 2023-02-13 22:06
Normal topic Fastrelax problem
by Pernille » Tue, 2014-06-17 08:59
1
2,096 by Pernille
Fri, 2014-06-20 00:17
Normal topic Problem in using "loopmodel" application to add missing residues
by sushreet » Wed, 2014-08-27 12:43
1
2,099 by rmoretti
Thu, 2014-08-28 09:42
Normal topic weights for pH_protocol
by fmerino » Wed, 2017-04-26 07:14
1
2,107 by rmoretti
Thu, 2017-04-27 07:10
Normal topic running structure prediction with robetta server like automation
by dhirajks » Mon, 2018-01-29 21:32
1
2,109 by rmoretti
Tue, 2018-01-30 07:51
Normal topic Is it possible to restart the ddg_monomer.linuxgccrelease?
by lanselibai » Mon, 2015-09-07 03:46
1
2,110 by rmoretti
Wed, 2015-09-09 12:01
Normal topic RosettaCM or FastRelax?
by Tianyang89 » Wed, 2020-09-23 07:46
3
2,110 by danpf
Thu, 2020-09-24 13:44
Normal topic how to generate Fragments using up to 2001 structures only
by oppopomoz » Sat, 2015-07-25 00:43
1
2,111 by rmoretti
Thu, 2015-08-06 08:57
Normal topic ddg_monomer with -ddg::local_opt_only true, will it affect other chains that are close?
by cossio » Fri, 2014-12-26 13:11
1
2,112 by rmoretti
Tue, 2015-01-13 07:44
Normal topic Instructing design scripts to use noncanonical AA instead of canonical
by zcrook » Tue, 2014-11-25 10:43
1
2,114 by rmoretti
Wed, 2014-11-26 07:51
Normal topic Building loop extensions in a membrane protein with Remodel
by benhardy » Tue, 2020-06-02 08:21
2
2,114 by benhardy
Sun, 2020-09-20 11:15
Normal topic Thread target sequence
by duz » Thu, 2021-04-01 10:09
4
2,115 by duz
Mon, 2021-05-03 07:50
Normal topic ddG calculations to study point mutations
by N.Chopra » Fri, 2018-12-07 12:36
1
2,118 by jeliazkov
Fri, 2018-12-07 12:51
Normal topic protein interface design
by Negarsardar » Tue, 2019-05-28 07:04
2
2,124 by Negarsardar
Thu, 2019-05-30 23:46
Normal topic problem with modelling of protein (140 and 150 residues respectively)
by krlitros87 » Wed, 2014-10-22 09:39
1
2,126 by rmoretti
Thu, 2014-10-23 13:55
Normal topic AbinitioRelax - Error with flags
by jmschu » Wed, 2018-11-21 17:36
1
2,128 by rmoretti
Fri, 2018-11-23 07:59
Normal topic why is talaris2014 scoring fuction not used with ligand docking?
by banshee » Fri, 2016-09-09 01:19
1
2,134 by rmoretti
Fri, 2016-09-09 07:47
Normal topic What is a rational minimal value for the "-nstruct" option
by Sunyp_IM » Fri, 2020-05-22 01:28
3
2,140 by nannemdp
Sun, 2020-05-24 14:46
Normal topic Coupled Moves crash with Membrane Protein - residue_edge is undefined for root vertex
by benhardy » Mon, 2020-06-15 09:33
3
2,140 by benhardy
Fri, 2020-06-19 07:55
Normal topic relax job failed
by albumns » Sat, 2014-07-26 00:21
1
2,147 by rmoretti
Sun, 2014-07-27 10:48
Normal topic Docking prepack vs. relax
by David Weis » Tue, 2017-02-21 05:37
1
2,153 by smlewis
Tue, 2017-02-21 07:58
Normal topic Enzyme Design - Score File
by nwhoppe » Thu, 2016-04-07 15:11
1
2,155 by rmoretti
Fri, 2016-04-08 07:39
Normal topic Molecular Replacement with multiple chains
by brspurri » Fri, 2011-06-10 08:25
0
2,158 by brspurri
Mon, 2014-04-21 06:47
Normal topic Ligand Docking with ARLS
by cam11 » Thu, 2016-06-23 09:34
1
2,159 by rmoretti
Thu, 2016-06-23 10:55
Normal topic Failed glycine check when running RosettaRemodel to build disulfide
by cheyuk » Fri, 2014-06-27 02:31
1
2,164 by everyday847
Sun, 2014-09-28 21:16
Normal topic How to run partial_thread in RosettaCM when residure are more than 9999?
by lanselibai » Mon, 2020-05-11 22:43
2
2,165 by lanselibai
Tue, 2020-05-12 20:25
Normal topic DNA Interface design
by zadie1118 » Wed, 2011-06-22 07:05
0
2,166 by zadie1118
Mon, 2014-04-21 06:47
Normal topic The problems on pdb renumbering
by Sunyp_IM » Sun, 2017-08-20 06:39
0
2,168 by Sunyp_IM
Sun, 2017-08-20 06:39
Normal topic Difference between movemap and -pivot_residues
by aloshbau » Wed, 2016-02-24 13:21
1
2,170 by rmoretti
Wed, 2016-02-24 14:39
Normal topic Should I trust the score output from relax used with a protein complex?
by cossio » Thu, 2015-05-07 06:08
1
2,178 by rmoretti
Mon, 2015-05-25 12:37
Normal topic RosettaLigand Docking
by Dinesh Kumar » Mon, 2018-01-15 20:54
1
2,184 by rmoretti
Tue, 2018-01-16 07:24
Normal topic Remodel: the pose does not have residue with chain=H, PDBnum=114
by lanselibai » Wed, 2019-12-25 13:35
1
2,192 by lanselibai
Fri, 2019-12-27 09:38
Normal topic Mutating phosphorylated residues to "canonical" residues and vice versa
by ValentinaSora » Mon, 2019-05-20 05:58
1
2,192 by rmoretti
Wed, 2019-07-10 09:22
Normal topic RosettaMatch and CST files
by mwfranklin » Mon, 2016-07-25 11:49
0
2,192 by mwfranklin
Mon, 2016-07-25 11:49
Normal topic "Make_fragments.pl" can't connect to dependencies links
by Corvin » Wed, 2019-09-04 23:54
2
2,198 by Corvin
Thu, 2019-10-10 01:12
Normal topic Symmetry-aware Backrub?
by gamacy » Fri, 2014-11-14 02:18
1
2,200 by rmoretti
Tue, 2014-11-18 09:10
Normal topic Speed problem when running RosettaLigand ligand docking
by Nicole Deng » Tue, 2019-10-08 04:29
2
2,204 by Nicole Deng
Tue, 2020-11-03 19:07
Normal topic Membrane protein protocol on PyRosetta
by jlapin » Sat, 2018-07-28 14:41
2
2,205 by jlapin
Wed, 2018-08-01 07:15
Normal topic antibody.linuxgccrelease- output models don't have the same sequence as the input fasta
by agctomer » Thu, 2021-01-21 15:35
4
2,209 by agctomer
Sun, 2021-01-31 01:06
Normal topic Abinitio error: std::out_of_range: basic_string
by Harley Worthy » Tue, 2017-10-31 15:20
1
2,216 by Harley Worthy
Thu, 2017-11-02 08:53
Normal topic Docking with loop rebuilding
by kxiao » Sun, 2015-06-28 19:37
1
2,218 by rmoretti
Fri, 2015-07-03 14:41
Normal topic ligand_docking_error
by Alison_Yajie » Mon, 2020-04-20 12:27
3
2,220 by YuFei
Sat, 2020-05-30 00:12
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