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Rosetta 3 - Applications

Topic / Topic starter Replies Viewssort descending Last post
Normal topic Symmetry-aware Backrub?
by gamacy » Fri, 2014-11-14 02:18
1
1,337 by rmoretti
Tue, 2014-11-18 09:10
Normal topic Interface Analyzer Segmentation Fault
by h_trasatti » Tue, 2017-02-21 12:48
1
1,345 by smlewis
Tue, 2017-02-21 14:10
Normal topic ddg_monomer with -ddg::local_opt_only true, will it affect other chains that are close?
by cossio » Fri, 2014-12-26 13:11
1
1,346 by rmoretti
Tue, 2015-01-13 07:44
Normal topic RosettaMatch and CST files
by mwfranklin » Mon, 2016-07-25 11:49
0
1,347 by mwfranklin
Mon, 2016-07-25 11:49
Normal topic Including ab-initio predicted model in fragment library generation
by ashu4487 » Thu, 2016-12-08 17:49
2
1,348 by ashu4487
Sun, 2016-12-11 19:03
Normal topic Difference between movemap and -pivot_residues
by aloshbau » Wed, 2016-02-24 13:21
1
1,350 by rmoretti
Wed, 2016-02-24 14:39
Normal topic Fixing part of a ligand in dock-design
by hssnzdh2 » Mon, 2015-11-23 17:14
1
1,353 by rmoretti
Tue, 2015-11-24 16:16
Normal topic Fastrelax problem
by Pernille » Tue, 2014-06-17 08:59
1
1,354 by Pernille
Fri, 2014-06-20 00:17
Normal topic Folding and Docking using Symmetry
by danielles » Wed, 2012-09-12 11:32
0
1,354 by danielles
Mon, 2014-04-21 06:47
Normal topic Failed glycine check when running RosettaRemodel to build disulfide
by cheyuk » Fri, 2014-06-27 02:31
1
1,356 by everyday847
Sun, 2014-09-28 21:16
Normal topic cartesian_ddg error: "Assertion `files.size() == 1` failed."
by cossio » Fri, 2018-05-11 09:59
2
1,360 by cossio
Fri, 2018-05-18 09:51
Normal topic comparative modeling of a homodimer
by banshee » Mon, 2017-01-09 18:34
1
1,361 by rmoretti
Wed, 2017-01-11 13:00
Normal topic problem with modelling of protein (140 and 150 residues respectively)
by krlitros87 » Wed, 2014-10-22 09:39
1
1,368 by rmoretti
Thu, 2014-10-23 13:55
Normal topic How to restart RASREC run
by aep » Fri, 2016-07-01 04:39
2
1,374 by aep
Fri, 2016-07-01 06:54
Normal topic relax job failed
by albumns » Sat, 2014-07-26 00:21
1
1,374 by rmoretti
Sun, 2014-07-27 10:48
Normal topic Docking with loop rebuilding
by kxiao » Sun, 2015-06-28 19:37
1
1,385 by rmoretti
Fri, 2015-07-03 14:41
Normal topic Getting error with Rosetta "antibody.linuxgccrelease" command
by Sunyp_IM » Mon, 2017-08-07 19:40
1
1,393 by smlewis
Tue, 2017-08-15 23:19
Normal topic Script for loop modeling: how to define loop sequence
by batch2k » Thu, 2014-10-30 12:58
1
1,396 by jadolfbr
Fri, 2014-10-31 08:45
Normal topic The question about ligand score function
by asbelx » Sun, 2018-06-17 02:07
2
1,404 by asbelx
Mon, 2018-06-18 22:34
Normal topic Any backrub expert?
by johnnytam100 » Fri, 2019-03-01 01:58
4
1,412 by johnnytam100
Sun, 2019-03-03 23:42
Normal topic JD2 MPI
by jrcf » Wed, 2015-10-28 14:45
1
1,417 by rmoretti
Sat, 2015-10-31 08:57
Normal topic Loop modeling: KIC with fragments producing unusual models
by kamau » Mon, 2015-06-01 12:06
1
1,421 by rmoretti
Sat, 2015-06-20 20:07
Normal topic Error with talaris2014.wts, which leads to a garbade scorefunction in loop modelling for protein-protein docking
by Corvin » Wed, 2019-06-19 08:40
5
1,421 by rmoretti
Tue, 2019-07-09 10:13
Normal topic Problem in redesign binding site
by armart999 » Fri, 2016-10-14 01:55
1
1,424 by rmoretti
Fri, 2016-10-14 08:42
Normal topic rosetta backrub
by ladimafakher » Thu, 2018-10-04 08:01
4
1,425 by ladimafakher
Thu, 2018-11-01 03:47
Normal topic cluster,how to get the statistic data
by MajorID » Wed, 2011-06-08 09:20
0
1,428 by MajorID
Mon, 2014-04-21 06:47
Normal topic Error in Loop modeling and other queries
by ashu4487 » Wed, 2016-05-11 18:23
1
1,430 by rmoretti
Fri, 2016-06-17 10:15
Normal topic How to scan double mutations in RosettaScripts?
by msardejani » Mon, 2016-12-12 16:52
2
1,435 by msardejani
Mon, 2016-12-12 17:48
Normal topic Creating model of 89-90 residues by ab initio methodology-help
by krlitros87 » Sun, 2014-05-25 12:12
1
1,442 by rmoretti
Mon, 2014-05-26 09:29
Normal topic Regarding the efficiency of the new low resolution ligand-docking movement “Transform”.
by Martin Floor » Mon, 2017-05-15 09:19
2
1,448 by Martin Floor
Mon, 2017-05-15 11:13
Normal topic Loopmodel with DNA has no energy score
by Nicky_Learning_... » Sun, 2015-05-10 19:31
1
1,458 by rmoretti
Mon, 2015-05-25 12:30
Normal topic ddg_monomer "ERROR: seqpos >= 1"
by cossio » Fri, 2015-10-02 12:20
1
1,458 by rmoretti
Fri, 2015-10-02 12:30
Normal topic remodel gives no output
by coomteng@gmail.com » Tue, 2018-03-06 07:40
3
1,466 by rmoretti
Wed, 2018-03-07 08:44
Normal topic Running snugdock was crashed by "segmentation fault"
by Sunyp_IM » Mon, 2017-08-21 05:03
3
1,467 by rmoretti
Tue, 2017-08-22 09:03
Normal topic New CSRosetta toolbox
by sn » Mon, 2017-04-24 12:42
3
1,469 by rmoretti
Tue, 2017-04-25 06:41
Normal topic Altering substrate specificity
by bp » Thu, 2016-12-22 02:45
2
1,472 by bp
Thu, 2016-12-22 07:54
Normal topic Packstat score in InterfaceAnalyzer
by Vedasheersh » Fri, 2017-01-27 06:21
2
1,473 by smlewis
Fri, 2017-01-27 07:20
Normal topic Specifying resfile in rosetta scripts
by johnnytam100 » Mon, 2019-03-18 02:19
4
1,473 by rmoretti
Fri, 2019-03-29 09:30
Normal topic "sparks failed" error when running "make_fragments.pl"?
by Danielsebas » Tue, 2019-09-03 03:43
6
1,475 by Jacob_Verburgt
Tue, 2020-03-10 14:39
Normal topic DDG_monomer application
by shadrinams » Mon, 2018-02-12 12:14
2
1,478 by shadrinams
Wed, 2018-03-14 07:46
Normal topic Collecting all decoys from batch files
by aep » Sun, 2016-08-07 12:23
2
1,483 by aep
Sat, 2016-08-13 13:03
Normal topic std::bad_alloc error after changing .xml script?
by chrisHKL » Wed, 2020-03-04 11:44
10
1,497 by jadolfbr
Thu, 2020-03-05 07:02
Normal topic Adding 'virtual' residues for N- and C-terminal optimisation
by Derek Smith » Thu, 2014-08-14 23:18
1
1,499 by jadolfbr
Fri, 2014-10-31 09:00
Normal topic Output structures from docking_prepack_protocol: initial__*.pdb vs prepack__*.pdb, which one should I send to docking_protocol?
by cossio » Thu, 2015-02-05 07:10
1
1,499 by rmoretti
Mon, 2015-02-09 12:33
Normal topic FloppyTail vs. Remodel for linkers
by attesor » Mon, 2014-07-07 08:36
1
1,505 by smlewis
Mon, 2014-07-07 11:58
Normal topic cluster.linuxgccrelease Killed error
by samuelrpita » Fri, 2015-11-20 05:56
1
1,505 by rmoretti
Tue, 2015-11-24 16:07
Normal topic Ligand params file proton_chi parameters
by staciekim » Thu, 2017-08-17 14:50
2
1,517 by staciekim
Thu, 2017-08-17 17:06
Normal topic relax a protein with phosphorylated serine residue
by zruan » Thu, 2018-02-01 09:18
3
1,519 by rmoretti
Tue, 2018-02-06 09:47
Normal topic select_best_unique_ligand_poses - Ligand docking
by subha » Thu, 2018-04-19 10:36
4
1,521 by subha
Fri, 2018-04-20 12:49
Normal topic The question of ligand docking with constraints
by asbelx » Mon, 2018-06-11 09:39
3
1,527 by rmoretti
Thu, 2018-06-28 12:58
Normal topic Antibody Docking application
by Maryam_tabasinezhad » Sat, 2015-09-05 09:58
1
1,529 by jadolfbr
Wed, 2015-09-09 12:35
Normal topic creating compound task mover
by aaj » Wed, 2016-02-24 04:48
2
1,531 by aaj
Wed, 2016-02-24 07:37
Normal topic Clustering issue
by Loki01 » Thu, 2018-03-29 10:16
4
1,534 by Loki01
Thu, 2018-04-12 08:28
Normal topic how to pick fragments for a transmembrane protein
by tevang » Mon, 2012-05-28 06:52
1
1,536 by tevang
Mon, 2014-04-21 06:47
Normal topic Surface accessible residue as a constraint.
by arthuc01 » Fri, 2012-03-09 23:27
1
1,538 by smlewis
Mon, 2014-04-21 06:47
Normal topic how to do alanine scanning
by xinmiaohe » Mon, 2019-08-26 17:40
5
1,551 by xinmiaohe
Fri, 2019-10-04 08:54
Normal topic Segmentation Fault in Fragment picking
by ashu4487 » Fri, 2018-07-06 20:47
2
1,557 by ashu4487
Mon, 2018-07-16 19:24
Normal topic Enzyme Design with additional covalent backbone bonds
by mwfranklin » Wed, 2016-08-03 10:23
1
1,557 by rmoretti
Mon, 2016-09-05 11:29
Normal topic Filter based on ligand_is_touching
by Swillard » Mon, 2017-09-11 19:00
3
1,559 by rmoretti
Mon, 2018-11-12 14:35
Normal topic error--rosetta fragment‐based refinement protocol for refinement against EM density
by gsuchunli » Mon, 2016-07-25 13:35
1
1,576 by gsuchunli
Mon, 2016-07-25 13:56
Normal topic Space Swap!!!
by jrcf » Sun, 2016-02-14 11:43
2
1,577 by jrcf
Mon, 2016-02-15 17:59
Normal topic RosettaScripts - SetupNCS mover
by felipet » Fri, 2016-03-25 12:42
2
1,587 by rmoretti
Fri, 2016-04-29 08:26
Normal topic does the loop kinetic support MPI now?
by albumns » Fri, 2012-10-26 06:31
2
1,592 by smlewis
Mon, 2014-04-21 06:47
Normal topic rosetta 3.3 - antibody
by ron amon » Mon, 2014-07-21 00:44
1
1,594 by rmoretti
Mon, 2014-07-21 10:51
Normal topic Trouble running Enzyme Design application
by danaitop » Thu, 2016-08-11 13:34
2
1,608 by rmoretti
Mon, 2016-09-05 11:10
Normal topic Rosetta_CM error unrecognized atom 'CS' this atom is not in PDB
by rlwoltz » Thu, 2019-01-24 19:43
3
1,608 by bjharris
Sun, 2020-08-23 14:03
Normal topic Checkpoint with rosetta3.4
by AmelieH » Mon, 2014-12-01 15:51
1
1,612 by rmoretti
Wed, 2014-12-03 19:07
Normal topic Can I change high-resolution filter in SymDock
by attesor » Fri, 2015-10-23 07:35
2
1,614 by attesor
Mon, 2015-10-26 09:01
Normal topic Reproducing the exact result using information from previos run
by nawsad » Thu, 2013-03-14 12:05
2
1,617 by nawsad
Mon, 2014-04-21 06:47
Normal topic minirosetta: how to reserve (inter-chain) disulfides after relax ?
by lanselibai » Sat, 2015-01-24 10:56
0
1,618 by lanselibai
Thu, 2015-01-29 00:50
Normal topic How to preserve ACE/NME termini?
by nitroamos » Tue, 2018-05-22 13:07
3
1,620 by rmoretti
Thu, 2018-06-28 12:44
Normal topic flexpepdock_score_only
by ays » Sun, 2014-09-21 06:17
2
1,626 by ays
Tue, 2014-09-30 08:31
Normal topic DNA Interface design
by zadie1118 » Wed, 2011-06-22 07:05
0
1,627 by zadie1118
Mon, 2014-04-21 06:47
Normal topic molfile_to_params script error
by pablogalazdavison » Tue, 2015-07-07 21:22
1
1,630 by rmoretti
Tue, 2015-07-14 14:59
Normal topic The Usage of motifgraft
by Sunyp_IM » Sun, 2017-11-19 20:22
2
1,634 by Sunyp_IM
Mon, 2017-11-20 19:20
Normal topic How to add a residue to one chain of an existing structure?
by sn » Mon, 2017-04-17 09:34
2
1,640 by sn
Thu, 2017-04-20 21:43
Normal topic cross correlation calculation
by jingwei xu » Sat, 2016-04-16 19:11
2
1,645 by jingwei xu
Wed, 2016-05-04 23:26
Normal topic Molecular Replacement with multiple chains
by brspurri » Fri, 2011-06-10 08:25
0
1,646 by brspurri
Mon, 2014-04-21 06:47
Normal topic Problem with AtomPair constraint
by jarek » Tue, 2012-10-09 07:28
1
1,650 by smlewis
Mon, 2014-04-21 06:47
Normal topic Enzyme design output silent file and score file
by deltag » Fri, 2012-09-28 13:07
1
1,653 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Enzdes scorefile lost, can I recreate it
by eyong123 » Wed, 2015-04-15 05:55
2
1,654 by eyong123
Wed, 2015-04-22 11:33
Normal topic regarding extracting silent file - renamed tag
by shrutikhare » Thu, 2014-04-17 01:19
2
1,657 by shrutikhare
Fri, 2014-04-18 23:11
Normal topic behind threading protocol
by fred » Tue, 2011-10-25 05:37
0
1,662 by fred
Mon, 2014-04-21 06:47
Normal topic Remodel: neighbor cutoff
by felipet » Wed, 2014-07-16 08:11
2
1,663 by felipet
Thu, 2014-07-17 10:13
Normal topic membrane ab-initio modeling, is the quality comparable to comparative modeling of 20% id template?
by fglaser » Thu, 2011-04-07 07:57
0
1,670 by fglaser
Mon, 2014-04-21 06:47
Normal topic Problems with fixbb in Rosetta 3.5
by mdidonato » Wed, 2014-06-04 13:56
2
1,672 by mdidonato
Wed, 2014-06-04 14:55
Normal topic RosettaCM
by DmitriiN » Sun, 2017-01-22 17:52
3
1,675 by smlewis
Mon, 2017-01-23 06:26
Normal topic Perform MPI relax with movemap files
by sn » Sun, 2017-03-05 13:18
3
1,679 by sn
Mon, 2017-03-06 10:03
Normal topic Holes output interpretation
by lah435 » Mon, 2012-06-04 15:02
1
1,684 by smlewis
Mon, 2014-04-21 06:47
Normal topic modeling 4 linkers between 2 domains
by pdbb » Thu, 2013-05-16 08:23
1
1,687 by smlewis
Mon, 2014-04-21 06:47
Normal topic Ensemble docking causes segmentation fault 11
by David Weis » Mon, 2017-03-06 14:30
2
1,689 by David Weis
Mon, 2017-03-13 06:40
Normal topic how to run my openmp programe in rosetta3.3?
by lihowe » Mon, 2012-02-27 23:43
1
1,696 by smlewis
Mon, 2014-04-21 06:47
Normal topic Representing Cross-linked nitrogens
by jjlee2 » Sat, 2011-11-26 18:42
1
1,697 by smlewis
Mon, 2014-04-21 06:47
Normal topic ligand conformer generation for enzyme design
by bo » Mon, 2013-02-11 16:51
1
1,700 by smlewis
Mon, 2014-04-21 06:47
Normal topic Failing Fragment libraries us Chemical shifts with Robettaa
by kalabharath » Tue, 2015-04-28 19:33
2
1,701 by kalabharath
Wed, 2015-04-29 16:21
Normal topic trouble in floppytail modelling
by ytao » Thu, 2013-06-27 13:15
1
1,707 by ytao
Mon, 2014-04-21 06:48
Normal topic KeyError: 'subject-id' in antibody modelling
by bogac » Mon, 2017-03-06 02:00
2
1,708 by bogac
Tue, 2017-03-07 02:11
Normal topic Design a peptide linked to small molecule ligand
by shaunmk » Mon, 2015-03-02 09:05
1
1,709 by rmoretti
Wed, 2015-03-25 12:39
Normal topic Relax structure with metal cofactors
by h_trasatti » Tue, 2017-03-14 14:04
2
1,713 by rmoretti
Tue, 2017-03-28 08:51
Normal topic latest version of rosetta unable to build models
by pramod » Mon, 2014-11-03 11:31
1
1,717 by rmoretti
Tue, 2014-11-04 10:33
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