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Rosetta 3 - Applications
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restrain residues in docking by albumns » Sat, 2013-11-02 08:52 |
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2,671 |
by jadolfbr Mon, 2014-04-21 06:48 |
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-loops:fa_input not found in command line top-level context by swarekwood » Thu, 2017-08-24 03:15 |
2 |
2,676 |
by swarekwood Fri, 2017-08-25 05:08 |
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Prevention of the negatively charged Nitrogen protonation by coupled_moves by Corvin » Wed, 2020-11-18 02:56 |
4 |
2,677 |
by Corvin Wed, 2020-11-25 02:58 |
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protein-protein docking by cbala » Mon, 2011-04-18 09:15 |
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2,677 |
by smlewis Mon, 2014-04-21 06:47 |
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Rosetta Script for ddg_monomer protocol 16 by cossio » Thu, 2018-01-25 08:23 |
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2,678 |
by cossio Sun, 2018-03-11 09:12 |
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Ligand docking: ERROR: set_atom_base: atoms must be bonded! by mengzhang » Mon, 2014-05-12 12:36 |
1 |
2,680 |
by rmoretti Mon, 2014-05-12 15:08 |
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Reproducing the exact result using information from previos run by nawsad » Thu, 2013-03-14 12:05 |
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2,687 |
by nawsad Mon, 2014-04-21 06:47 |
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number of structures in homology modeling for cluster analysis by pdbb » Fri, 2013-04-12 08:52 |
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2,688 |
by smlewis Mon, 2014-04-21 06:47 |
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how to make "static" built binaries use multiple cpus like "mpi"? by Danielsebas » Wed, 2019-09-18 06:41 |
3 |
2,697 |
by rmoretti Wed, 2019-09-18 10:21 |
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Checkpoint with rosetta3.4 by AmelieH » Mon, 2014-12-01 15:51 |
1 |
2,697 |
by rmoretti Wed, 2014-12-03 19:07 |
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Regarding the efficiency of the new low resolution ligand-docking movement “Transform”. by Martin Floor » Mon, 2017-05-15 09:19 |
2 |
2,698 |
by Martin Floor Mon, 2017-05-15 11:13 |
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creating compound task mover by aaj » Wed, 2016-02-24 04:48 |
2 |
2,702 |
by aaj Wed, 2016-02-24 07:37 |
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interface_delta ligand_docking by Prasanth Kumar » Tue, 2013-06-18 08:37 |
1 |
2,713 |
by rmoretti Mon, 2014-04-21 06:48 |
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How can I set ref2015 and ligand.wts(-restore_pre_talaris_2013_behavior ) by asbelx » Sat, 2019-06-08 00:07 |
3 |
2,713 |
by happycaapi Tue, 2021-06-29 15:35 |
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Make Fragments by Run » Mon, 2013-11-11 05:31 |
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2,718 |
by smlewis Mon, 2014-04-21 06:48 |
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Space Swap!!! by jrcf » Sun, 2016-02-14 11:43 |
2 |
2,729 |
by jrcf Mon, 2016-02-15 17:59 |
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RosettaAntibody core.pose.util error by rishibedi » Fri, 2018-10-05 01:31 |
2 |
2,733 |
by esozdemir Thu, 2019-06-13 12:19 |
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Filtering while clustering by David Hoover » Wed, 2011-03-30 07:03 |
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2,737 |
by smlewis Mon, 2014-04-21 06:47 |
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Error with FlexPepDock by aloshbau » Sat, 2013-08-10 11:51 |
1 |
2,739 |
by rmoretti Mon, 2014-04-21 06:48 |
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creating a model using a base pdb and extending a chain by rlwoltz » Fri, 2013-07-12 15:35 |
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2,739 |
by nawsad Mon, 2014-04-21 06:48 |
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flexpepdock_score_only by ays » Sun, 2014-09-21 06:17 |
2 |
2,742 |
by ays Tue, 2014-09-30 08:31 |
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Altering substrate specificity by bp » Thu, 2016-12-22 02:45 |
2 |
2,754 |
by bp Thu, 2016-12-22 07:54 |
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Problems with fixbb in Rosetta 3.5 by mdidonato » Wed, 2014-06-04 13:56 |
2 |
2,757 |
by mdidonato Wed, 2014-06-04 14:55 |
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Incorporating iron-sulfur cluster into ROSETTA applications by Derek Smith » Thu, 2014-08-14 23:12 |
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2,760 |
by rmoretti Fri, 2014-08-15 08:06 |
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Relax both peptide and ligands by matteoferla » Thu, 2018-09-13 03:11 |
3 |
2,761 |
by smlewis Fri, 2018-09-14 10:34 |
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ERROR: Specified chain does not exist. by ajaniharesh » Fri, 2019-04-05 11:14 |
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2,762 |
by ajaniharesh Tue, 2019-04-09 06:53 |
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Reproduce Robetta's ddg values of interface alanine scan using Rosetta? by cossio » Mon, 2015-01-19 07:14 |
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2,769 |
by cossio Mon, 2015-01-19 07:14 |
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rosetta's keyword list by fred » Tue, 2014-01-21 06:03 |
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2,773 |
by rmoretti Mon, 2014-04-21 06:48 |
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loop modeling scoring by Nicky_Learning_... » Wed, 2015-05-13 20:00 |
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2,778 |
by rmoretti Mon, 2015-05-25 11:30 |
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Enzdes scorefile lost, can I recreate it by eyong123 » Wed, 2015-04-15 05:55 |
2 |
2,784 |
by eyong123 Wed, 2015-04-22 11:33 |
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Can I change high-resolution filter in SymDock by attesor » Fri, 2015-10-23 07:35 |
2 |
2,789 |
by attesor Mon, 2015-10-26 09:01 |
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Remodel: neighbor cutoff by felipet » Wed, 2014-07-16 08:11 |
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2,792 |
by felipet Thu, 2014-07-17 10:13 |
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Flexible peptide docking with flexible receptor backbone by tevang » Fri, 2012-09-14 11:18 |
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2,793 |
by smlewis Mon, 2014-04-21 06:47 |
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Failing Fragment libraries us Chemical shifts with Robettaa by kalabharath » Tue, 2015-04-28 19:33 |
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2,804 |
by kalabharath Wed, 2015-04-29 16:21 |
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RosettaScripts - SetupNCS mover by felipet » Fri, 2016-03-25 12:42 |
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2,805 |
by rmoretti Fri, 2016-04-29 08:26 |
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regarding extracting silent file - renamed tag by shrutikhare » Thu, 2014-04-17 01:19 |
2 |
2,809 |
by shrutikhare Fri, 2014-04-18 23:11 |
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cross correlation calculation by jingwei xu » Sat, 2016-04-16 19:11 |
2 |
2,810 |
by jingwei xu Wed, 2016-05-04 23:26 |
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Template/Input length mismatch error during RosettaCM by marinok » Mon, 2020-05-04 13:12 |
4 |
2,816 |
by marinok Mon, 2020-05-11 12:48 |
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RosettaAntibody3 is failing with "Error: no input sequences were specified!" by brspurri » Sun, 2020-08-16 16:16 |
4 |
2,818 |
by brspurri Tue, 2020-08-18 09:57 |
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issues about cstfile in RosettaMatch by Nicole Deng » Fri, 2020-12-18 05:44 |
3 |
2,839 |
by He Xiao Sun, 2021-04-11 19:29 |
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ERROR: unrecognized residue name 'GLY_p:RepulsiveOnly' by smiruthi » Mon, 2011-12-12 14:27 |
1 |
2,839 |
by rmoretti Mon, 2014-04-21 06:47 |
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trRosetta protocol Segmentation Fault by nc-ring » Wed, 2021-04-28 11:57 |
5 |
2,841 |
by nc-ring Tue, 2021-05-04 12:26 |
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getting a3m files by alonwenger » Wed, 2021-12-15 02:38 |
2 |
2,844 |
by alonwenger Sat, 2021-12-18 12:32 |
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Flexible docking using rosetta density-fitting for DNA by helm » Thu, 2012-06-14 23:43 |
1 |
2,845 |
by smlewis Mon, 2014-04-21 06:47 |
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Protein Design by ac.research » Wed, 2017-02-15 19:25 |
1 |
2,850 |
by cdbahl Sat, 2017-02-18 13:02 |
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Trouble running Enzyme Design application by danaitop » Thu, 2016-08-11 13:34 |
2 |
2,860 |
by rmoretti Mon, 2016-09-05 11:10 |
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When using "screening job files" in small molecule-docking I get: Residue type already exists in the cache Error by Martin Floor » Thu, 2020-09-17 06:01 |
4 |
2,875 |
by Martin Floor Tue, 2020-09-22 00:48 |
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No interface for protein - Interface Analyzer by aloshbau » Tue, 2013-05-21 21:00 |
1 |
2,878 |
by jarod Mon, 2014-04-21 06:47 |
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score:weights for fixbb application in Rosetta 3.5 by tylerborrman » Tue, 2015-07-28 14:16 |
2 |
2,879 |
by tylerborrman Wed, 2015-09-23 10:51 |
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"Segmentation fault" for "minirosetta.linuxgccrelease" by lanselibai » Tue, 2014-11-04 03:17 |
1 |
2,881 |
by rmoretti Tue, 2014-11-04 08:53 |
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Binding energy contribution broken down by residue by brspurri » Tue, 2013-07-23 12:47 |
1 |
2,884 |
by rmoretti Mon, 2014-04-21 06:48 |
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rosetta scores for mutated structures by harshkhare » Wed, 2011-11-23 09:30 |
1 |
2,885 |
by rmoretti Mon, 2014-04-21 06:47 |
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Destination of score.fsc file by anirbanzz » Wed, 2011-04-20 23:30 |
1 |
2,891 |
by smlewis Mon, 2014-04-21 06:47 |
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Docking with constraint by Hongtham » Sat, 2014-12-27 09:56 |
2 |
2,892 |
by rmoretti Fri, 2015-01-02 09:43 |
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FlexPepDock Concatenation by cam11 » Mon, 2014-08-11 07:39 |
2 |
2,896 |
by cam11 Wed, 2014-08-13 10:06 |
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profit program in antibody design by tzhou » Tue, 2013-10-15 23:29 |
1 |
2,900 |
by rmoretti Mon, 2014-04-21 06:48 |
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latest version of rosetta unable to build models by pramod » Mon, 2014-11-03 11:31 |
1 |
2,917 |
by rmoretti Tue, 2014-11-04 10:33 |
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Options "-out:prefix" didn't work by maruhuang » Tue, 2019-09-10 05:42 |
4 |
2,920 |
by danpf Fri, 2020-02-21 18:32 |
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Difference between relax and mimimize_with_cst by basvandenberg » Thu, 2012-02-09 00:16 |
1 |
2,922 |
by rmoretti Mon, 2014-04-21 06:47 |
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homology membrane modeling demo in rosetta 3.5 by rlwoltz » Mon, 2013-09-09 10:26 |
1 |
2,925 |
by smlewis Mon, 2014-04-21 06:48 |
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mpirun docking_protocol by NanB » Mon, 2020-08-03 11:38 |
1 |
2,925 |
by ssrb Fri, 2020-08-14 09:18 |
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Trouble running MPI docking protocol, please help! by Rob_Barringer » Tue, 2020-08-18 06:40 |
2 |
2,941 |
by Rob_Barringer Fri, 2020-09-25 05:45 |
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errors about RIFdocking by sia » Sun, 2022-07-24 20:45 |
8 |
2,948 |
by Minghui-Du Sun, 2024-03-24 21:12 |
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Ways to improve AbRelax performance? by Corvin » Tue, 2022-04-19 06:10 |
2 |
2,948 |
by Corvin Thu, 2022-04-21 00:50 |
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New CSRosetta toolbox by sn » Mon, 2017-04-24 12:42 |
3 |
2,950 |
by rmoretti Tue, 2017-04-25 06:41 |
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Model truncated proteins by BuddySphinx » Wed, 2018-12-12 10:32 |
3 |
2,950 |
by smlewis Wed, 2018-12-12 16:51 |
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InterfaceAnalyzer -resfile by gw » Wed, 2011-11-02 16:01 |
1 |
2,952 |
by smlewis Mon, 2014-04-21 06:47 |
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homology modeling with threading says length mismatch between sequence and alignment by rqliang » Thu, 2015-08-06 11:46 |
2 |
2,959 |
by jharamesh Sat, 2015-08-08 19:51 |
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Relax with a ligand is messing up the coordinates of the ligand by brspurri » Sat, 2015-01-24 12:39 |
1 |
2,960 |
by rmoretti Mon, 2015-01-26 12:15 |
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Error in using “loopmodel” for selective rebuilding by sushreet » Mon, 2014-07-14 11:57 |
2 |
2,964 |
by sushreet Tue, 2014-08-26 13:02 |
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symmetric fixbb design with design_hpatch by sdh_h » Sat, 2013-02-02 01:48 |
2 |
2,967 |
by ronj Mon, 2014-04-21 06:47 |
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References where Rosetta is used to compute ddG of binding after mutation? by cossio » Tue, 2015-03-17 05:13 |
1 |
2,978 |
by rmoretti Wed, 2015-03-25 11:33 |
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Got error when running minirosetta.linuxgccrelease on cluster but fine on Ubuntu by lanselibai » Mon, 2014-11-10 08:12 |
2 |
2,981 |
by lanselibai Tue, 2014-11-11 04:42 |
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limit_cluster_size default value by sacch » Thu, 2011-11-24 17:57 |
2 |
2,988 |
by sacch Mon, 2014-04-21 06:47 |
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Negative Design by rbjacob » Thu, 2018-10-11 09:18 |
3 |
2,988 |
by smlewis Mon, 2018-10-15 08:42 |
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KIC with fragments versus Next generation KIC by Loki01 » Fri, 2018-09-07 05:06 |
3 |
3,005 |
by smlewis Mon, 2018-09-10 11:48 |
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Ensemble docking causes segmentation fault 11 by David Weis » Mon, 2017-03-06 14:30 |
2 |
3,018 |
by David Weis Mon, 2017-03-13 06:40 |
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Options for Enzdes RosettaScripts by joeg » Wed, 2014-03-12 09:28 |
1 |
3,021 |
by rmoretti Thu, 2014-03-13 08:04 |
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relax a protein with phosphorylated serine residue by zruan » Thu, 2018-02-01 09:18 |
3 |
3,024 |
by rmoretti Tue, 2018-02-06 09:47 |
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Docking on mpi. by Pernille » Mon, 2014-07-28 08:40 |
1 |
3,027 |
by rmoretti Mon, 2014-08-04 14:51 |
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membrane score weights by ytao » Sat, 2012-09-08 06:56 |
2 |
3,034 |
by ytao Mon, 2014-04-21 06:47 |
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cluster error by sudhar » Fri, 2011-06-17 05:58 |
1 |
3,035 |
by rmoretti Mon, 2014-04-21 06:47 |
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RosettaAntibodyDesign: How can I run the protocol without allowing design? by brspurri » Tue, 2020-05-26 08:12 |
5 |
3,045 |
by brspurri Wed, 2020-06-03 13:20 |
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Abinitio protocol and X-Ray diffraction data by allan.ferrari » Wed, 2015-08-12 12:49 |
2 |
3,047 |
by allan.ferrari Fri, 2015-08-28 12:07 |
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Ligand docking: ERROR: set_atom_base: atoms must be bonded! by mengzhang » Mon, 2014-05-12 12:36 |
1 |
3,048 |
by jharamesh Mon, 2014-11-03 12:50 |
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Running snugdock was crashed by "segmentation fault" by Sunyp_IM » Mon, 2017-08-21 05:03 |
3 |
3,065 |
by rmoretti Tue, 2017-08-22 09:03 |
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Can the Rosetta Antibody Design (RAbD) protocol incorporate glycans? by ccottrell » Tue, 2020-05-05 20:30 |
5 |
3,067 |
by jadolfbr Wed, 2020-05-06 11:37 |
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How to eliminate "NUL"s when scoring PDBs? by lanselibai » Tue, 2014-10-14 10:04 |
2 |
3,071 |
by lanselibai Fri, 2014-10-17 03:36 |
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Calculate_protein_protein_ddg by kamau » Fri, 2015-01-30 11:27 |
2 |
3,078 |
by deepanshuiitb Thu, 2015-03-19 19:14 |
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RosettaSurface in 3.4? by skovacs » Tue, 2012-07-10 16:02 |
2 |
3,082 |
by mpacella Mon, 2014-04-21 06:47 |
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Ligand Docking with RosettaScripts gives a ParsedProtocol exception by brspurri » Sun, 2017-05-14 17:51 |
2 |
3,085 |
by brspurri Mon, 2017-05-15 11:48 |
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Can't generate a cst file to use with ddg_monomer application by ctqwong » Sat, 2021-03-13 03:53 |
6 |
3,086 |
by ctqwong Thu, 2021-03-18 02:04 |
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Full Protocol by shekhar » Fri, 2013-10-04 01:07 |
1 |
3,087 |
by rmoretti Mon, 2014-04-21 06:48 |
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residues_patch_selectors CENTROID_HA by Pernille » Fri, 2014-10-03 03:53 |
2 |
3,088 |
by Pernille Wed, 2014-10-08 10:41 |
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Filter based on ligand_is_touching by Swillard » Mon, 2017-09-11 19:00 |
3 |
3,088 |
by rmoretti Mon, 2018-11-12 14:35 |
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Modeling more than one protein loop at the same time by hzhekova » Mon, 2018-01-15 14:03 |
2 |
3,089 |
by hzhekova Tue, 2018-01-16 10:31 |
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Filter ddg_filter reports failure! by deepanshuiitb » Fri, 2015-02-27 18:19 |
2 |
3,100 |
by deepanshuiitb Sat, 2015-02-28 19:24 |
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Fold and Dock - chains not in contact by arthuc01 » Wed, 2012-06-13 01:45 |
2 |
3,102 |
by smlewis Mon, 2014-04-21 06:47 |
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relax.linuxgccrelease in multiple processors by jpfuenzalidawx » Thu, 2021-01-14 14:07 |
5 |
3,103 |
by jadolfbr Fri, 2021-01-15 08:06 |
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Pre-packing a model for SWA loop building by franfdez » Sun, 2014-07-27 02:16 |
2 |
3,106 |
by franfdez Mon, 2014-07-28 01:04 |
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