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Rosetta 3 - Applications

Topic / Topic starter Replies Viewssort descending Last post
Normal topic Relax both peptide and ligands
by matteoferla » Thu, 2018-09-13 03:11
3
2,634 by smlewis
Fri, 2018-09-14 10:34
Normal topic trRosetta protocol Segmentation Fault
by nc-ring » Wed, 2021-04-28 11:57
5
2,634 by nc-ring
Tue, 2021-05-04 12:26
Normal topic number of structures in homology modeling for cluster analysis
by pdbb » Fri, 2013-04-12 08:52
1
2,638 by smlewis
Mon, 2014-04-21 06:47
Normal topic ERROR: Specified chain does not exist.
by ajaniharesh » Fri, 2019-04-05 11:14
2
2,651 by ajaniharesh
Tue, 2019-04-09 06:53
Normal topic Space Swap!!!
by jrcf » Sun, 2016-02-14 11:43
2
2,651 by jrcf
Mon, 2016-02-15 17:59
Normal topic interface_delta ligand_docking
by Prasanth Kumar » Tue, 2013-06-18 08:37
1
2,654 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Altering substrate specificity
by bp » Thu, 2016-12-22 02:45
2
2,658 by bp
Thu, 2016-12-22 07:54
Normal topic flexpepdock_score_only
by ays » Sun, 2014-09-21 06:17
2
2,659 by ays
Tue, 2014-09-30 08:31
Normal topic Error with FlexPepDock
by aloshbau » Sat, 2013-08-10 11:51
1
2,671 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Incorporating iron-sulfur cluster into ROSETTA applications
by Derek Smith » Thu, 2014-08-14 23:12
1
2,671 by rmoretti
Fri, 2014-08-15 08:06
Normal topic Make Fragments
by Run » Mon, 2013-11-11 05:31
1
2,672 by smlewis
Mon, 2014-04-21 06:48
Normal topic RosettaAntibody3 is failing with "Error: no input sequences were specified!"
by brspurri » Sun, 2020-08-16 16:16
4
2,672 by brspurri
Tue, 2020-08-18 09:57
Normal topic Filtering while clustering
by David Hoover » Wed, 2011-03-30 07:03
1
2,674 by smlewis
Mon, 2014-04-21 06:47
Normal topic Template/Input length mismatch error during RosettaCM
by marinok » Mon, 2020-05-04 13:12
4
2,677 by marinok
Mon, 2020-05-11 12:48
Normal topic Ways to improve AbRelax performance?
by Corvin » Tue, 2022-04-19 06:10
2
2,677 by Corvin
Thu, 2022-04-21 00:50
Normal topic creating a model using a base pdb and extending a chain
by rlwoltz » Fri, 2013-07-12 15:35
1
2,680 by nawsad
Mon, 2014-04-21 06:48
Normal topic issues about cstfile in RosettaMatch
by Nicole Deng » Fri, 2020-12-18 05:44
3
2,680 by He Xiao
Sun, 2021-04-11 19:29
Normal topic Problems with fixbb in Rosetta 3.5
by mdidonato » Wed, 2014-06-04 13:56
2
2,683 by mdidonato
Wed, 2014-06-04 14:55
Normal topic When using "screening job files" in small molecule-docking I get: Residue type already exists in the cache Error
by Martin Floor » Thu, 2020-09-17 06:01
4
2,698 by Martin Floor
Tue, 2020-09-22 00:48
Normal topic Enzdes scorefile lost, can I recreate it
by eyong123 » Wed, 2015-04-15 05:55
2
2,704 by eyong123
Wed, 2015-04-22 11:33
Normal topic Can I change high-resolution filter in SymDock
by attesor » Fri, 2015-10-23 07:35
2
2,705 by attesor
Mon, 2015-10-26 09:01
Normal topic loop modeling scoring
by Nicky_Learning_... » Wed, 2015-05-13 20:00
1
2,710 by rmoretti
Mon, 2015-05-25 11:30
Normal topic rosetta's keyword list
by fred » Tue, 2014-01-21 06:03
1
2,713 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Remodel: neighbor cutoff
by felipet » Wed, 2014-07-16 08:11
2
2,715 by felipet
Thu, 2014-07-17 10:13
Normal topic RosettaScripts - SetupNCS mover
by felipet » Fri, 2016-03-25 12:42
2
2,717 by rmoretti
Fri, 2016-04-29 08:26
Normal topic regarding extracting silent file - renamed tag
by shrutikhare » Thu, 2014-04-17 01:19
2
2,717 by shrutikhare
Fri, 2014-04-18 23:11
Normal topic Trouble running MPI docking protocol, please help!
by Rob_Barringer » Tue, 2020-08-18 06:40
2
2,721 by Rob_Barringer
Fri, 2020-09-25 05:45
Normal topic cross correlation calculation
by jingwei xu » Sat, 2016-04-16 19:11
2
2,725 by jingwei xu
Wed, 2016-05-04 23:26
Normal topic Failing Fragment libraries us Chemical shifts with Robettaa
by kalabharath » Tue, 2015-04-28 19:33
2
2,734 by kalabharath
Wed, 2015-04-29 16:21
Normal topic Flexible peptide docking with flexible receptor backbone
by tevang » Fri, 2012-09-14 11:18
1
2,737 by smlewis
Mon, 2014-04-21 06:47
Normal topic Reproduce Robetta's ddg values of interface alanine scan using Rosetta?
by cossio » Mon, 2015-01-19 07:14
0
2,738 by cossio
Mon, 2015-01-19 07:14
Normal topic Flexible docking using rosetta density-fitting for DNA
by helm » Thu, 2012-06-14 23:43
1
2,764 by smlewis
Mon, 2014-04-21 06:47
Normal topic Trouble running Enzyme Design application
by danaitop » Thu, 2016-08-11 13:34
2
2,768 by rmoretti
Mon, 2016-09-05 11:10
Normal topic ERROR: unrecognized residue name 'GLY_p:RepulsiveOnly'
by smiruthi » Mon, 2011-12-12 14:27
1
2,778 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Protein Design
by ac.research » Wed, 2017-02-15 19:25
1
2,787 by cdbahl
Sat, 2017-02-18 13:02
Normal topic Options "-out:prefix" didn't work
by maruhuang » Tue, 2019-09-10 05:42
4
2,789 by danpf
Fri, 2020-02-21 18:32
Normal topic score:weights for fixbb application in Rosetta 3.5
by tylerborrman » Tue, 2015-07-28 14:16
2
2,794 by tylerborrman
Wed, 2015-09-23 10:51
Normal topic Model truncated proteins
by BuddySphinx » Wed, 2018-12-12 10:32
3
2,808 by smlewis
Wed, 2018-12-12 16:51
Normal topic rosetta scores for mutated structures
by harshkhare » Wed, 2011-11-23 09:30
1
2,811 by rmoretti
Mon, 2014-04-21 06:47
Normal topic FlexPepDock Concatenation
by cam11 » Mon, 2014-08-11 07:39
2
2,813 by cam11
Wed, 2014-08-13 10:06
Normal topic Binding energy contribution broken down by residue
by brspurri » Tue, 2013-07-23 12:47
1
2,813 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Docking with constraint
by Hongtham » Sat, 2014-12-27 09:56
2
2,818 by rmoretti
Fri, 2015-01-02 09:43
Normal topic "Segmentation fault" for "minirosetta.linuxgccrelease"
by lanselibai » Tue, 2014-11-04 03:17
1
2,823 by rmoretti
Tue, 2014-11-04 08:53
Normal topic No interface for protein - Interface Analyzer
by aloshbau » Tue, 2013-05-21 21:00
1
2,827 by jarod
Mon, 2014-04-21 06:47
Normal topic latest version of rosetta unable to build models
by pramod » Mon, 2014-11-03 11:31
1
2,834 by rmoretti
Tue, 2014-11-04 10:33
Normal topic mpirun docking_protocol
by NanB » Mon, 2020-08-03 11:38
1
2,835 by ssrb
Fri, 2020-08-14 09:18
Normal topic Destination of score.fsc file
by anirbanzz » Wed, 2011-04-20 23:30
1
2,836 by smlewis
Mon, 2014-04-21 06:47
Normal topic Difference between relax and mimimize_with_cst
by basvandenberg » Thu, 2012-02-09 00:16
1
2,839 by rmoretti
Mon, 2014-04-21 06:47
Normal topic New CSRosetta toolbox
by sn » Mon, 2017-04-24 12:42
3
2,849 by rmoretti
Tue, 2017-04-25 06:41
Normal topic profit program in antibody design
by tzhou » Tue, 2013-10-15 23:29
1
2,852 by rmoretti
Mon, 2014-04-21 06:48
Normal topic homology membrane modeling demo in rosetta 3.5
by rlwoltz » Mon, 2013-09-09 10:26
1
2,873 by smlewis
Mon, 2014-04-21 06:48
Normal topic Negative Design
by rbjacob » Thu, 2018-10-11 09:18
3
2,873 by smlewis
Mon, 2018-10-15 08:42
Normal topic Error in using “loopmodel” for selective rebuilding
by sushreet » Mon, 2014-07-14 11:57
2
2,881 by sushreet
Tue, 2014-08-26 13:02
Normal topic homology modeling with threading says length mismatch between sequence and alignment
by rqliang » Thu, 2015-08-06 11:46
2
2,885 by jharamesh
Sat, 2015-08-08 19:51
Normal topic InterfaceAnalyzer -resfile
by gw » Wed, 2011-11-02 16:01
1
2,887 by smlewis
Mon, 2014-04-21 06:47
Normal topic Got error when running minirosetta.linuxgccrelease on cluster but fine on Ubuntu
by lanselibai » Mon, 2014-11-10 08:12
2
2,889 by lanselibai
Tue, 2014-11-11 04:42
Normal topic RosettaAntibodyDesign: How can I run the protocol without allowing design?
by brspurri » Tue, 2020-05-26 08:12
5
2,889 by brspurri
Wed, 2020-06-03 13:20
Normal topic Relax with a ligand is messing up the coordinates of the ligand
by brspurri » Sat, 2015-01-24 12:39
1
2,892 by rmoretti
Mon, 2015-01-26 12:15
Normal topic References where Rosetta is used to compute ddG of binding after mutation?
by cossio » Tue, 2015-03-17 05:13
1
2,894 by rmoretti
Wed, 2015-03-25 11:33
Normal topic KIC with fragments versus Next generation KIC
by Loki01 » Fri, 2018-09-07 05:06
3
2,896 by smlewis
Mon, 2018-09-10 11:48
Normal topic relax.linuxgccrelease in multiple processors
by jpfuenzalidawx » Thu, 2021-01-14 14:07
5
2,896 by jadolfbr
Fri, 2021-01-15 08:06
Normal topic Ensemble docking causes segmentation fault 11
by David Weis » Mon, 2017-03-06 14:30
2
2,899 by David Weis
Mon, 2017-03-13 06:40
Normal topic symmetric fixbb design with design_hpatch
by sdh_h » Sat, 2013-02-02 01:48
2
2,901 by ronj
Mon, 2014-04-21 06:47
Normal topic limit_cluster_size default value
by sacch » Thu, 2011-11-24 17:57
2
2,905 by sacch
Mon, 2014-04-21 06:47
Normal topic Can the Rosetta Antibody Design (RAbD) protocol incorporate glycans?
by ccottrell » Tue, 2020-05-05 20:30
5
2,907 by jadolfbr
Wed, 2020-05-06 11:37
Normal topic Can't generate a cst file to use with ddg_monomer application
by ctqwong » Sat, 2021-03-13 03:53
6
2,917 by ctqwong
Thu, 2021-03-18 02:04
Normal topic Options for Enzdes RosettaScripts
by joeg » Wed, 2014-03-12 09:28
1
2,921 by rmoretti
Thu, 2014-03-13 08:04
Normal topic relax a protein with phosphorylated serine residue
by zruan » Thu, 2018-02-01 09:18
3
2,922 by rmoretti
Tue, 2018-02-06 09:47
Normal topic antibody_numbering_converter cannot recognize the IMGT scheme
by cryosky » Sat, 2020-02-29 23:12
4
2,926 by jadolfbr
Sun, 2020-03-01 14:54
Normal topic Running snugdock was crashed by "segmentation fault"
by Sunyp_IM » Mon, 2017-08-21 05:03
3
2,940 by rmoretti
Tue, 2017-08-22 09:03
Normal topic Relaxed proteins show higher clash score in molprobity results.
by Wang Zhe » Fri, 2021-12-03 04:32
4
2,944 by smlewis
Wed, 2021-12-08 13:02
Normal topic Abinitio protocol and X-Ray diffraction data
by allan.ferrari » Wed, 2015-08-12 12:49
2
2,945 by allan.ferrari
Fri, 2015-08-28 12:07
Normal topic membrane score weights
by ytao » Sat, 2012-09-08 06:56
2
2,956 by ytao
Mon, 2014-04-21 06:47
Normal topic cluster error
by sudhar » Fri, 2011-06-17 05:58
1
2,960 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Docking on mpi.
by Pernille » Mon, 2014-07-28 08:40
1
2,966 by rmoretti
Mon, 2014-08-04 14:51
Normal topic St13runtime_error in Rosetta ligand docking
by syntekabio2019 » Thu, 2023-02-09 18:18
2
2,974 by syntekabio2019
Sun, 2023-02-19 18:39
Normal topic Filter based on ligand_is_touching
by Swillard » Mon, 2017-09-11 19:00
3
2,976 by rmoretti
Mon, 2018-11-12 14:35
Normal topic Unable to understand fragment picking tutorial points.
by Danielsebas » Thu, 2019-09-05 03:44
4
2,977 by danpf
Fri, 2019-09-06 11:29
Normal topic How to eliminate "NUL"s when scoring PDBs?
by lanselibai » Tue, 2014-10-14 10:04
2
2,981 by lanselibai
Fri, 2014-10-17 03:36
Normal topic Ligand docking: ERROR: set_atom_base: atoms must be bonded!
by mengzhang » Mon, 2014-05-12 12:36
1
2,993 by jharamesh
Mon, 2014-11-03 12:50
Normal topic Ligand params file proton_chi parameters
by staciekim » Thu, 2017-08-17 14:50
2
2,998 by staciekim
Thu, 2017-08-17 17:06
Normal topic Rna Denovo
by helderveras » Wed, 2020-05-06 08:40
5
2,998 by everyday847
Wed, 2020-05-20 08:52
Normal topic Filter ddg_filter reports failure!
by deepanshuiitb » Fri, 2015-02-27 18:19
2
2,999 by deepanshuiitb
Sat, 2015-02-28 19:24
Normal topic RosettaSurface in 3.4?
by skovacs » Tue, 2012-07-10 16:02
2
3,000 by mpacella
Mon, 2014-04-21 06:47
Normal topic Calculate_protein_protein_ddg
by kamau » Fri, 2015-01-30 11:27
2
3,003 by deepanshuiitb
Thu, 2015-03-19 19:14
Normal topic residues_patch_selectors CENTROID_HA
by Pernille » Fri, 2014-10-03 03:53
2
3,007 by Pernille
Wed, 2014-10-08 10:41
Normal topic Ligand Docking with RosettaScripts gives a ParsedProtocol exception
by brspurri » Sun, 2017-05-14 17:51
2
3,009 by brspurri
Mon, 2017-05-15 11:48
Normal topic RosettaCM
by DmitriiN » Sun, 2017-01-22 17:52
3
3,010 by smlewis
Mon, 2017-01-23 06:26
Normal topic Modeling more than one protein loop at the same time
by hzhekova » Mon, 2018-01-15 14:03
2
3,013 by hzhekova
Tue, 2018-01-16 10:31
Normal topic Relax structure with metal cofactors
by h_trasatti » Tue, 2017-03-14 14:04
2
3,013 by rmoretti
Tue, 2017-03-28 08:51
Normal topic Multistate design issues with -run:msd_job_dist option and MSDMover
by elaine.thai » Wed, 2020-05-13 18:07
2
3,019 by Jane_002
Thu, 2023-08-03 19:47
Normal topic Pre-packing a model for SWA loop building
by franfdez » Sun, 2014-07-27 02:16
2
3,028 by franfdez
Mon, 2014-07-28 01:04
Normal topic Full Protocol
by shekhar » Fri, 2013-10-04 01:07
1
3,031 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Packstat score in InterfaceAnalyzer
by Vedasheersh » Fri, 2017-01-27 06:21
2
3,032 by smlewis
Fri, 2017-01-27 07:20
Normal topic Fold and Dock - chains not in contact
by arthuc01 » Wed, 2012-06-13 01:45
2
3,034 by smlewis
Mon, 2014-04-21 06:47
Normal topic How to calculate dG?
by yperez » Mon, 2012-10-22 07:28
1
3,041 by smlewis
Mon, 2014-04-21 06:47
Normal topic Can rosetta generate a centroid model based on the rna sequence?
by yels » Fri, 2021-03-26 04:06
7
3,043 by yels
Wed, 2021-03-31 18:31
Normal topic Snugdock+ensembledock usage
by Anouk » Mon, 2014-09-22 08:09
1
3,054 by jadolfbr
Mon, 2014-10-20 13:42
Normal topic Fragment Files
by nkemjika » Fri, 2011-07-22 15:11
1
3,064 by dgront
Mon, 2014-04-21 06:47
Normal topic Scoring functions: talaris2013 incompatible versions
by Smbat » Tue, 2020-10-13 06:18
5
3,067 by Astghik
Thu, 2020-10-15 00:48
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