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Rosetta 3 - General

Topic / Topic starter Replies Viewssort descending Last post
Normal topic Fragment files
by exchhattu » Fri, 2009-09-18 01:04
4
2,829 by rmoretti
Tue, 2015-01-06 09:58
Normal topic Side-chain packing with multiple chains
by pachecoj » Mon, 2014-04-21 16:53
3
2,831 by jadolfbr
Mon, 2014-04-21 21:05
Normal topic This element is not expected.
by ac.research » Fri, 2017-10-13 03:47
6
2,847 by vmulligan
Thu, 2020-07-16 23:31
Normal topic How to integrate Rosetta code to my program?
by Lsg » Tue, 2011-06-28 07:18
3
2,848 by smlewis
Mon, 2014-04-21 06:47
Normal topic Symmetric abrelax modeling
by SenyorDrew » Fri, 2011-02-18 10:14
4
2,857 by IAndre
Mon, 2014-04-21 06:47
Normal topic run Rosetta under windows prompt
by skipper » Fri, 2013-12-20 21:16
3
2,859 by rmoretti
Mon, 2014-04-21 06:48
Normal topic industrial example of ROSETTA modeled protein
by banshee » Sat, 2016-04-23 23:40
5
2,872 by banshee
Tue, 2016-04-26 00:47
Normal topic Random seed confusion
by pardave » Mon, 2012-11-12 09:45
4
2,872 by pardave
Mon, 2014-04-21 06:47
Normal topic trying to create heme.params
by einew » Mon, 2011-02-28 13:33
3
2,881 by einew
Mon, 2014-04-21 06:47
Normal topic Evaluating energies on non-standard rotamer set
by pachecoj » Sat, 2014-07-26 16:27
5
2,883 by pachecoj
Sat, 2014-08-09 06:33
Normal topic solvation
by gw » Wed, 2011-08-31 17:14
4
2,884 by smlewis
Mon, 2014-04-21 06:47
Normal topic fix backbone design of interface residue
by Lindsay » Tue, 2013-12-17 19:23
3
2,888 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Energy minimization of a crystal structure with residues mutated in pymol
by bharat_46010 » Wed, 2014-05-21 19:52
1
2,896 by rmoretti
Fri, 2014-05-23 08:09
Normal topic Comparing scores
by renedominik » Mon, 2012-02-27 05:21
4
2,897 by renedominik
Mon, 2014-04-21 06:47
Normal topic Problem in 3D structure building of ss DNA aptamer
by irshadbaig » Sun, 2013-11-17 20:15
1
2,907 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Why I have the different result with the same initial condition?
by mikelin » Sat, 2011-06-04 11:35
2
2,909 by JeffreyGray
Mon, 2014-04-21 06:47
Normal topic Relax protocoll short pdb of AAA petide
by knutjbj » Wed, 2011-01-26 05:01
5
2,912 by smlewis
Mon, 2014-04-21 06:47
Normal topic What is the total_score that relax outputs?
by cossio » Tue, 2014-12-02 13:50
4
2,913 by cossio
Thu, 2014-12-04 05:41
Normal topic Linker problems when building mini
by assaff » Mon, 2009-10-12 01:07
6
2,914 by smlewis
Mon, 2014-04-21 06:47
Normal topic how to do cluster after low resolution protein-protein docking?
by albumns » Sat, 2010-11-27 01:17
4
2,916 by albumns
Mon, 2014-04-21 06:47
Normal topic rs filter for terms in .sc files
by gw » Sat, 2012-08-18 16:20
4
2,931 by gw
Mon, 2014-04-21 06:47
Normal topic Identical decoys
by aroop » Tue, 2012-09-25 12:50
4
2,933 by smlewis
Mon, 2014-04-21 06:47
Normal topic Question regarding Mlipo score
by DanielK » Tue, 2012-05-29 02:04
4
2,935 by smlewis
Mon, 2014-04-21 06:47
Normal topic rosetta on snow leopard?
by nitroamos » Thu, 2009-10-01 17:07
3
2,957 by nitroamos
Mon, 2014-04-21 06:47
Normal topic P(Res | phi,psi )
by jadolfbr » Thu, 2011-07-21 08:49
5
2,958 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic sign of ddG of mutation
by Lindsay » Wed, 2013-11-27 00:25
2
2,958 by Lindsay
Mon, 2014-04-21 06:48
Normal topic Public subversion / Enzyme design public app
by weallen » Tue, 2009-08-11 20:50
6
2,985 by weallen
Mon, 2014-04-21 06:47
Normal topic cluster error
by albumns » Thu, 2010-12-16 18:06
4
2,998 by smlewis
Mon, 2014-04-21 06:47
Normal topic Give preference to native residue during fixed backbone designing
by tusharranjanmoharana » Mon, 2016-04-04 12:43
6
3,007 by rmoretti
Thu, 2016-04-28 15:19
Normal topic Calculating binding affinity
by phanvy » Wed, 2014-10-15 23:35
2
3,011 by phanvy
Thu, 2014-10-16 18:54
Normal topic "CEN" atom in the pdb file
by wszjzhang » Wed, 2010-03-17 14:35
3
3,014 by anusmita_sahoo
Mon, 2014-04-21 06:47
Normal topic Determine the weights of score functions
by SunH » Thu, 2010-09-02 07:20
3
3,019 by smlewis
Mon, 2014-04-21 06:47
Normal topic Updated publications/details on Rosetta score function?
by nitroamos » Tue, 2009-10-20 19:48
4
3,020 by rmoretti
Mon, 2015-03-30 14:43
Normal topic Antibody homology modeling fails after blastp
by sunhwan » Sat, 2017-02-18 11:25
7
3,036 by sunhwan
Mon, 2017-02-27 11:02
Normal topic How to input pdb to rosetta format add "missing" residues to pdb file
by zhisheng » Tue, 2011-06-07 09:51
1
3,039 by smlewis
Mon, 2014-04-21 06:47
Normal topic cluster error
by albumns » Sun, 2011-03-06 03:02
3
3,040 by smlewis
Mon, 2014-04-21 06:47
Normal topic Resfile for fixed backbone design
by dyq » Wed, 2009-10-07 10:50
5
3,042 by attesor
Mon, 2014-04-21 06:47
Normal topic RMS in Score Application
by brspurri » Thu, 2011-12-29 09:19
1
3,042 by smlewis
Mon, 2014-04-21 06:47
Normal topic loop modelling error on Rosetta3.2 or Rosetta3.3
by exchhattu » Thu, 2011-09-29 03:58
5
3,043 by rpache
Mon, 2014-04-21 06:47
Normal topic Symmetric local protein docking
by efratmas » Tue, 2011-01-11 03:00
3
3,049 by smlewis
Mon, 2014-04-21 06:47
Normal topic AbinitioRelax with restraints/constraints
by jtmacd » Mon, 2011-07-11 07:07
2
3,053 by jtmacd
Mon, 2014-04-21 06:47
Normal topic InterfaceAnalyzer packstat score = 0.000
by vmc99 » Fri, 2018-11-16 11:30
11
3,068 by SenyorDrew
Wed, 2019-06-12 14:10
Normal topic ignore loops on threading
by fred » Tue, 2014-11-11 11:33
5
3,085 by rmoretti
Tue, 2014-11-18 10:01
Normal topic Flexible backbone design using PSSM
by kalicuta » Thu, 2012-07-26 13:38
4
3,100 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Minimization Issue: Coarse Graining to All atom modeling
by abolia » Tue, 2015-04-28 10:52
5
3,101 by rmoretti
Tue, 2015-05-05 14:31
Normal topic How to run docking in rosetta with small molecule
by ajaniharesh » Tue, 2012-02-28 03:58
1
3,129 by smlewis
Mon, 2014-04-21 06:47
Normal topic abinitiorelax: No funnel
by cno » Tue, 2010-07-27 06:14
6
3,137 by biofisikx
Mon, 2014-04-21 06:47
Normal topic log files
by shadrinams » Fri, 2018-01-26 07:29
7
3,144 by shadrinams
Mon, 2018-02-12 11:47
Normal topic modeling loops between domains
by dhorita » Thu, 2009-03-05 14:48
6
3,156 by jarod
Mon, 2014-04-21 06:47
Normal topic Fastrelax energy
by Lindsay » Thu, 2014-01-16 21:04
3
3,169 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Problem with the -dock_ppk flag
by lzx32 » Sat, 2011-04-30 00:21
4
3,178 by lzx32
Mon, 2014-04-21 06:47
Normal topic ERROR: Unused "free" argument specified: GDP.fa.tors
by ahmadkhalifa » Fri, 2018-06-15 11:27
10
3,197 by smlewis
Tue, 2018-06-19 09:28
Normal topic RosettaMatch in 3.2
by jtmacd » Mon, 2010-12-20 08:04
4
3,208 by jtmacd
Mon, 2014-04-21 06:47
Normal topic comparison of energy
by sdh » Mon, 2010-08-16 07:55
5
3,214 by smlewis
Mon, 2014-04-21 06:47
Normal topic Don't want to output the design structure
by Lindsay » Wed, 2012-05-02 08:02
6
3,219 by Anonymous
Mon, 2014-04-21 06:47
Normal topic Structure refinement guided by Cryo-EM density maps
by ahmadkhalifa » Thu, 2018-03-08 08:22
7
3,226 by ahmadkhalifa
Tue, 2018-05-01 09:04
Normal topic Discarding atoms for fixbb
by Jacob-kong » Tue, 2012-06-26 06:23
4
3,236 by Jacob-kong
Mon, 2014-04-21 06:47
Normal topic Rotate MOVER
by gw » Wed, 2012-08-15 12:09
5
3,254 by glemmon
Mon, 2014-04-21 06:47
Normal topic Can i start again the job ?
by byin » Thu, 2011-09-15 01:19
6
3,262 by byin
Mon, 2014-04-21 06:47
Normal topic match_dspos1 and other matcher options
by petrikigor » Sat, 2012-10-20 09:22
5
3,270 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Questions about rosetta fragment library ranking and fragment conformation sampling algorithm
by mdyini » Thu, 2011-05-19 17:34
3
3,274 by dgront
Mon, 2014-04-21 06:47
Normal topic dun10
by jadolfbr » Thu, 2012-01-19 12:16
5
3,274 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic How to model a protein that dimerizes to a small molecule?
by pholland » Wed, 2011-05-25 07:29
3
3,285 by pholland
Mon, 2014-04-21 06:47
Normal topic Rosetta releases and revision numbers
by ShaneOConnor » Thu, 2011-11-17 13:55
2
3,287 by smlewis
Mon, 2014-04-21 06:47
Normal topic Cannot run binaries after successful compilation
by ac.research » Mon, 2017-08-14 02:56
6
3,293 by ac.research
Fri, 2017-08-18 00:57
Normal topic Segmentation fault
by Hongtham » Mon, 2014-12-15 20:21
3
3,297 by Sandy
Fri, 2015-08-07 15:49
Normal topic Difference between checkpoint file and PSSM for making fragments
by qlj » Fri, 2014-03-21 22:00
1
3,299 by rmoretti
Sat, 2014-03-22 11:40
Normal topic questions about ab init membrane protein
by albumns » Mon, 2011-02-07 01:09
5
3,304 by zeynep
Mon, 2014-04-21 06:47
Normal topic computer specifications
by rlwoltz » Tue, 2012-10-09 16:11
4
3,310 by rlwoltz
Mon, 2014-04-21 06:47
Normal topic calculate RMSD (RNA modelling)
by obdulia » Tue, 2016-07-05 01:58
5
3,320 by obdulia
Wed, 2016-07-13 09:11
Normal topic Access sigma values for rotamers
by pachecoj » Thu, 2014-05-15 07:10
5
3,331 by rmoretti
Sat, 2014-05-17 14:10
Normal topic Rosetta forcefield terms and interpretation
by zigeuner » Sat, 2013-05-25 16:59
2
3,333 by rmoretti
Mon, 2014-04-21 06:47
Normal topic How to dock 3 missing domains onto a multi-domain protein
by tevang » Sun, 2011-04-10 15:22
3
3,333 by smlewis
Mon, 2014-04-21 06:47
Normal topic ETABLE constraint function type
by allan.ferrari » Tue, 2017-01-10 08:01
8
3,362 by smlewis
Sun, 2017-01-15 18:14
Normal topic Citing Rosetta3.0
by ctaylor » Fri, 2009-10-09 11:42
1
3,380 by smlewis
Mon, 2014-04-21 06:47
Normal topic I have a .tab file. How do I extract information from it?
by monos_morpheus » Tue, 2011-02-08 09:30
4
3,384 by monos_morpheus
Mon, 2014-04-21 06:47
Normal topic Scoring Electrostatics
by aroop » Tue, 2012-08-07 11:41
5
3,399 by aroop
Mon, 2014-04-21 06:47
Normal topic Suppressing Rosetta output, flag for that?
by msellers » Tue, 2011-04-26 11:18
4
3,401 by smlewis
Mon, 2014-04-21 06:47
Normal topic Interface energy vs binding energy
by Apiwat » Wed, 2014-02-05 00:47
2
3,413 by Apiwat
Sat, 2014-02-08 01:41
Normal topic Rosetta@cloud -- Macromolecular modeling in the cloud, Beta 1 is released!
by xujc » Wed, 2012-10-24 11:15
0
3,419 by xujc
Mon, 2014-04-21 06:47
Normal topic How to set up options in rosetta
by alejandro » Wed, 2011-04-06 02:08
3
3,436 by smlewis
Mon, 2014-04-21 06:47
Normal topic Relax command for docking purposes and cluster_vs_rmsd command
by Rkfoury » Wed, 2015-04-01 08:48
5
3,438 by rmoretti
Sat, 2015-04-25 10:05
Normal topic how to get reliable results for carbohydrate docking?
by albumns » Sun, 2010-09-05 23:12
3
3,444 by smlewis
Mon, 2014-04-21 06:47
Normal topic What is "repack", "prepack"?
by cossio » Wed, 2015-11-04 17:59
1
3,453 by rmoretti
Tue, 2015-11-10 11:52
Normal topic Native gives higher (positive) than lowest energy and clustered decoys
by tiagogomes89 » Thu, 2011-06-02 07:19
6
3,454 by rmoretti
Mon, 2014-04-21 06:47
Normal topic FlexPepDocking.mpi.linuxgccrelease bails out ERROR: total_residue() != 0 ERROR:: Exit from: src/core/pose/Pose.cc line: 1369
by knutjbj » Thu, 2011-02-03 03:24
2
3,473 by knutjbj
Mon, 2014-04-21 06:47
Normal topic Rosetta documentation
by Ashafix » Sat, 2013-08-31 06:50
3
3,480 by Ashafix
Mon, 2014-04-21 06:48
Normal topic a question about loop refinement
by albumns » Fri, 2012-03-02 09:38
4
3,493 by albumns
Mon, 2014-04-21 06:47
Normal topic Error : seqpos <= size()
by phanvy » Sun, 2014-10-05 17:20
4
3,496 by phanvy
Wed, 2014-10-08 01:42
Normal topic force field, energy function
by masterofpuppets » Wed, 2015-01-21 11:06
3
3,515 by masterofpuppets
Tue, 2015-01-27 07:07
Normal topic How to get the GDT_TS?
by JadAbbass » Thu, 2013-09-05 11:59
3
3,524 by rmoretti
Mon, 2014-04-21 06:48
Normal topic is it possbile to cluster pdb files?
by albumns » Wed, 2010-10-06 02:38
3
3,527 by smlewis
Mon, 2014-04-21 06:47
Normal topic Ligand conformations file in docking
by rosa » Fri, 2013-07-12 09:21
4
3,540 by rosa
Mon, 2014-04-21 06:48
Normal topic abinitio - is there a way to limit number of CPU cores the program uses?
by burkheadlab » Mon, 2011-05-09 16:37
1
3,541 by smlewis
Mon, 2014-04-21 06:47
Normal topic scoring models
by peony » Fri, 2013-12-06 02:45
5
3,548 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Maximum Number of Constraints
by jurkm » Fri, 2011-06-17 05:23
3
3,551 by jurkm
Mon, 2014-04-21 06:47
Normal topic Error_fragment_generation
by Payal Chatterjee » Fri, 2016-02-12 12:11
5
3,555 by Payal Chatterjee
Wed, 2016-02-24 10:35
Normal topic Enzyme Design
by bharat_46010 » Tue, 2014-11-25 23:55
4
3,557 by bharat_46010
Mon, 2014-12-15 20:51
Normal topic '-norepack_disulf' flag NOT work in Ligand-protein docking ?
by darlintai » Tue, 2011-01-11 22:21
6
3,562 by smlewis
Mon, 2014-04-21 06:47
Normal topic Failure to find libraries during build
by NCallahan » Mon, 2010-07-26 15:41
3
3,568 by smlewis
Mon, 2014-04-21 06:47
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