# Compilation

## ERROR ON MAC ROSETTA

Category:
Compilation

Good afternoon,

I downloaded the rosetta bundle with binaries for the Mac. When trying to compile the suite with ‘./scons.py mode=release bin’ I keep getting this error message.

src/protocols/antibody/database/CDRSetOptionsParser.cc:81:8: error: reference to 'core' is ambiguous

for ( core::Size i = 1; i <= core::Size(CDRNameEnum_proto_total); ++i ) {

^

src/core/types.hh:32:11: note: candidate found by name lookup is 'core'

namespace core {

^

Post Situation:

## Rosetta Antibody: Unable to open file and terminates

Category:
Compilation

Hello, please note I'm revising my posting with some major updates, apologies to the 9 viewers who have come here prior as this will read completely different.

I'm encountering a read error with antibody_H3. Below is the executable I ran (I've also reproduced the error with .static mode):

mpiexec -np 4 $ROSETTA3/bin/antibody_H3.cxx11threadmpiserialization.linuxgccrelease \ @abH3.flags abH3.flags looks just like: Post Situation: ## Performace Benchmarking Category: Compilation I have installed rosetta3 on HPC. How can I perform benchmarking tests to find out how many cpu or gpu nodes are required for running rosetta on HPC? Are these tests separate for each rossetta application? Post Situation: ## PyRosetta on Ubuntu 16.04 build error Category: Compilation - OS type/version/arch: Linux Ubuntu 16.04 (on an Azure virtual machine) - Python version: 3.5 - Version of PyRosetta including SVN revision number. PyRosetta4.Release.python35.ubuntu.release-236.tar.bz2 - Version of Rosetta: Rosetta 3.11 for Linux Hello, I've installed PyRosetta and upon importing in Python3.5 I receive the following error: Post Situation: ## compilation problem Category: Compilation Hi,everyone: Anyone can help me to solve this error: Traceback (most recent call last): File "./scons.py", line 187, in import SCons.Script ImportError: No module named SCons.Script Thank you very much! Post Situation: ## Confusion for Input Tutorial Category: Compilation Hi All, I have downloaded Rosetta 3.11 and built it with Scons.py using$ ./scons.py -j 4 mode=release bin

The building of the binaries seems to work correctly providing me with:

scons: done building targets.

I am now attempting to familiarize myself with Rosetta by traversing the tutorials starting with the Input & Output Tutorial so I am within this directory:

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## compiling with intel c++ compiler

Category:
Compilation

Intel compiler has problem dealing with defaulted and virtualized copy assignment operator, reported here.

Because of this bug, compilation with intel compiler fails at rosetta_bin_linux_2019.35.60890_bundle/main/source/src/protocols/genetic_algorithm/Entity.hh line 55.

By implementing it explicitly, or removing "virtual" seems to be a solution.

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## ./scons.py error in building

Category:
Compilation

I am in the stage of trying to install and build rosetta and I have reached the point where I am using scons.py.

I have been following the guide (https://www.rosettacommons.org/demos/latest/tutorials/install_build/install_build) so far, but I reach a road block when I build with scons.py. my commands and the results are as follows:

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## Cluster Compile Error: g++ ---no-as-needed

Category:
Compilation

Hi,

I'm trying to install Rosetta 2019.22 in my Home directory of a cluster (which I have done successfully on a different cluster in the past).

However, I'm getting an error:

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Post Situation: