Unsolved

What is the difference between the following executables?
Do any of them correspond to RosettaHoles2?

holes.macgccrelease
holes_daball_input.macgccrelease
packstat.macgccrelease
pack_stat_energy.macgccrelease

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Thanks to whoever knows the answer.

We have recently begun learning to use pyRosetta. We have been using Foldit (both standalone and the online game version) for a while to do some protein modelling. The online version of Foldit has easy to use Lua scripts that make protein manipulation very easy but we can't export the pdb files. We would like to be able to do similar scripting in pyRosetta that we can do in Lua. Does anyone have information on how the Foldit Lua script commands translate to equivalent functions in pyRosetta? For example, what is the equivalent of foldit's rubber-bands in pyRosetta?

Hi,I am a brand new user in using Rosetta.
In my case, I want to dock a ligand to a protein with the protein conformation fixed.
I have tried default protocol of ligand_docking but it did not work.
The conformation of some side chains changed.
So, does someone have the idea of designing a proper protocol to achieve this goal?
Thanks in advance.

I have attempted to run fold and dock on a protein (see an alternate post on this board for details) with C4 symmetry defined but but when I run:

/home/chxcja/rosetta3.3_bundles/rosetta_source/bin/score.linuxgccrelease -database ~/rosetta3.3_bundles/rosetta_database/ -in:file:silent default-c4membrane.out -in::file::fullatom -out:output

to get a pdb file of the models the pdbs only contain 1 chain.

Does anyone have any ideas how I can get the pdb of the complex (in this case a C4 symmetric structure).

Thanks for your help

Chris