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Relax with constraints by yijietseng » Tue, 2019-05-07 11:16 |
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3,273 |
by yijietseng Wed, 2019-05-22 09:54 |
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Help on Chimera Creator/Homodomain script by jadolfbr » Mon, 2010-06-14 21:34 |
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3,267 |
by mark.wilson Mon, 2014-04-21 06:47 |
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"corrupted" small molecules. aromatic rings get distortet during relax by patcD » Thu, 2022-07-21 04:51 |
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3,266 |
by rmoretti Thu, 2022-07-21 07:14 |
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How to pop off terminus variants by xfliu » Mon, 2012-09-03 03:12 |
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3,244 |
by xfliu Mon, 2014-04-21 06:47 |
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Amino acid modifications: retinal linked to lysine by tsikosek » Tue, 2014-01-21 12:52 |
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3,241 |
by rmoretti Mon, 2014-04-21 06:48 |
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Python 2.6 by AndrewBworth » Mon, 2010-02-01 18:49 |
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3,217 |
by AlexI Mon, 2014-04-21 06:47 |
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Noob question about optimizing a pose by AleksanderK » Fri, 2019-04-26 10:49 |
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3,205 |
by AleksanderK Fri, 2019-05-03 10:57 |
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Alternative to MinMover by MNP1986 » Tue, 2018-07-31 02:18 |
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3,198 |
by MNP1986 Tue, 2018-07-31 23:50 |
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SASA of pose by ac.research » Mon, 2017-06-26 03:55 |
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3,196 |
by ac.research Fri, 2017-06-30 05:44 |
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Adding energies of residues doesnt add up to energy of the entire protein by astrofunk » Tue, 2010-09-14 11:24 |
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3,194 |
by smlewis Mon, 2014-04-21 06:47 |
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PyRosetta Global Docking by ac.research » Sat, 2017-08-26 03:31 |
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3,153 |
by Sergey Thu, 2017-08-31 04:39 |
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Viewing and modifying hydrogen bond detection criteria by promero » Tue, 2014-09-16 15:26 |
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3,138 |
by rmoretti Wed, 2014-09-17 07:29 |
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Problem with sending individual energy terms using PyMOL Mover by jadolfbr » Fri, 2011-12-23 10:54 |
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3,123 |
by Sergey Mon, 2014-04-21 06:47 |
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Getting interface residues? by JuliusSu » Wed, 2014-04-16 21:58 |
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3,095 |
by JuliusSu Thu, 2014-04-17 18:34 |
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pose_from_pdb gives RuntimeError: unidentifiable C++ exception? by cossio » Thu, 2014-11-27 14:43 |
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3,077 |
by cossio Fri, 2014-11-28 05:05 |
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How can i introduce hydrogen bond as constraint? by sp1020 » Mon, 2012-04-02 05:12 |
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3,044 |
by smlewis Mon, 2014-04-21 06:47 |
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How To Read PyRosetta Documentation - GenericMonteCarloMover as example by ac.research » Wed, 2017-07-05 09:08 |
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3,041 |
by ac.research Thu, 2017-07-06 11:09 |
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Designating Fold Tree Edges as Flexible or Rigid by nleroy » Tue, 2019-07-23 11:34 |
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3,021 |
by smlewis Tue, 2019-07-23 13:27 |
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eval_ci_2b() with hydrogen bonds by TensorDuck » Fri, 2018-03-30 14:05 |
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3,013 |
by TensorDuck Mon, 2018-04-02 13:41 |
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ERROR: unrecognized element Rp when using pose_from_pdb by johnnytam100 » Thu, 2020-07-09 02:53 |
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3,011 |
by rmoretti Thu, 2020-07-09 08:35 |
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is_aromatic function by jadolfbr » Mon, 2013-12-02 19:31 |
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3,008 |
by jadolfbr Mon, 2014-04-21 06:48 |
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Reading constraints from a file by lah435 » Wed, 2017-06-14 18:56 |
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3,008 |
by rmoretti Fri, 2017-06-16 07:22 |
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Constraint files, section formatted by srballard » Fri, 2010-11-05 11:55 |
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2,987 |
by drluca77 Mon, 2014-04-21 06:47 |
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number of residues in a specific chain by felipet » Mon, 2015-03-09 09:30 |
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2,971 |
by jadolfbr Mon, 2015-03-09 12:54 |
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Packing Fraction of atoms in a closed loop or turn by bharat_46010 » Fri, 2013-08-09 17:40 |
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2,965 |
by rmoretti Mon, 2014-04-21 06:48 |
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Parsing XML tags using pyrosetta by rbehan » Mon, 2015-10-19 06:37 |
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2,954 |
by rmoretti Mon, 2015-10-19 08:25 |
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ImportError PyUnicodeUCS2 by nunesjulioc » Wed, 2010-02-17 07:29 |
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2,947 |
by nunesjulioc Mon, 2014-04-21 06:47 |
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Displaying side-chain rotamers in PyMol by ajasja » Wed, 2014-09-24 08:57 |
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2,942 |
by ajasja Wed, 2014-09-24 08:57 |
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Forum webpage not working by ajasja » Mon, 2014-09-22 06:14 |
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2,920 |
by ajasja Mon, 2014-09-22 09:53 |
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Glycan in IgG1 Fc by seanle24245 » Fri, 2016-07-22 07:50 |
2 |
2,909 |
by jadolfbr Fri, 2016-07-22 10:29 |
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Are there any plans to make PyRosetta directly functional on 64-bit architecture? by AndrewBworth » Fri, 2009-12-18 10:09 |
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2,908 |
by sid Mon, 2014-04-21 06:47 |
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RosettaDesign Result Evaluation by ac.research » Tue, 2018-06-05 18:45 |
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2,890 |
by ac.research Wed, 2018-07-18 03:50 |
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Alternatives to DockMCMProtocol by swirt » Thu, 2021-01-28 17:37 |
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2,874 |
by swirt Thu, 2021-02-25 21:54 |
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Using a custom scoring method in a high resolution refinement by kalabharath » Sun, 2015-10-25 22:28 |
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2,867 |
by rmoretti Mon, 2015-10-26 13:57 |
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PSIPRED secondary structure prediction in PyRosetta by ac.research » Fri, 2017-09-01 22:56 |
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2,866 |
by rmoretti Mon, 2017-09-04 09:52 |
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Jump question by rfschleif » Wed, 2011-06-15 14:00 |
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2,859 |
by smlewis Mon, 2014-04-21 06:47 |
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Cutout part of a protein by ac.research » Wed, 2017-05-31 11:55 |
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2,853 |
by jadolfbr Sat, 2017-06-03 19:20 |
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Adding a residue type to a residue type set by matteoferla » Wed, 2020-07-08 08:14 |
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2,847 |
by matteoferla Fri, 2020-07-10 02:20 |
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Which function can be use for mutation? by sprinkle166 » Wed, 2017-10-18 09:10 |
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2,836 |
by sprinkle166 Thu, 2017-10-19 12:57 |
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Using InterfaceSasaFilter by SenyorDrew » Thu, 2017-10-26 07:53 |
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2,822 |
by SenyorDrew Thu, 2017-10-26 13:30 |
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Rigid body perturbation while docking by wajidarshad » Fri, 2015-12-11 02:14 |
1 |
2,775 |
by rmoretti Wed, 2015-12-16 11:25 |
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No pdb output file when running ab initio modeling by bunyaviridae » Thu, 2013-06-20 01:33 |
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2,773 |
by rmoretti Mon, 2014-04-21 06:48 |
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Boost.Python C++/PyRosetta interop by gipsonb » Wed, 2010-10-06 15:15 |
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2,755 |
by gipsonb Mon, 2014-04-21 06:47 |
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GDT_TS how can I get it with pyrosetta? by oppopomoz » Thu, 2014-01-09 02:51 |
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2,746 |
by rmoretti Mon, 2014-04-21 06:48 |
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Is this the intended behaviour? by Ken » Thu, 2022-05-05 14:59 |
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2,737 |
by Ken Fri, 2022-05-06 07:03 |
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Fragments picker: -nohom option seems not to work by oppopomoz » Tue, 2013-05-14 06:31 |
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2,736 |
by linucks Mon, 2014-04-21 06:47 |
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Generating Atom Pair Constraints by Peik » Wed, 2020-08-05 15:39 |
3 |
2,736 |
by Peik Thu, 2020-08-06 11:50 |
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EnergyMethodCreator error when writing custom energy method by furybubu » Mon, 2017-12-11 15:46 |
2 |
2,723 |
by furybubu Tue, 2017-12-12 10:04 |
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Calculating sasa per atom and atomid_map by ioannis.f » Wed, 2014-08-13 05:26 |
1 |
2,714 |
by Sergey Thu, 2014-08-14 11:54 |
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hydrogen bond parameters used in detecting h-bonds by pyrosetta by bharat_46010 » Sun, 2013-07-21 23:44 |
1 |
2,703 |
by jadolfbr Mon, 2014-04-21 06:48 |
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Neutralize the C and N termini by rosettauser » Mon, 2011-07-25 07:24 |
1 |
2,701 |
by smlewis Mon, 2014-04-21 06:47 |
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Residue is not compatible with cutpoints by iGemBoulder » Thu, 2019-06-06 08:57 |
2 |
2,698 |
by iGemBoulder Tue, 2019-06-11 08:36 |
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Windows native build of PyRosetta 2.011 is ready for download! by Sergey » Mon, 2011-11-21 18:25 |
1 |
2,692 |
by Sergey Mon, 2014-04-21 06:47 |
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PyMOL did not work from a remote machine with PyRosetta by Jeremy1990 » Sat, 2015-08-08 21:25 |
1 |
2,667 |
by rmoretti Wed, 2015-08-12 10:29 |
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Classic Relax by iGemBoulder » Fri, 2019-06-28 09:24 |
2 |
2,660 |
by sheehajh Wed, 2019-07-17 12:43 |
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Fundamental methods: pose.residue().total_atom(), pose.atom(#) ? by msellers » Mon, 2010-11-01 10:53 |
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2,639 |
by smlewis Mon, 2014-04-21 06:47 |
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why two packing setting return different energy? by zhangying1990 » Wed, 2019-01-30 00:18 |
2 |
2,636 |
by zhangying1990 Fri, 2019-02-01 00:30 |
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Where can I found the dictory of all function of Pyrosetta？ by sprinkle166 » Mon, 2017-10-16 13:58 |
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2,630 |
by sprinkle166 Wed, 2017-10-18 09:06 |
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Calculate TM-score by nasim.soltani58 » Fri, 2021-03-26 16:50 |
1 |
2,611 |
by rmoretti Mon, 2021-03-29 06:53 |
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protein structure prediction by ravi1709 » Thu, 2011-07-28 00:05 |
1 |
2,609 |
by smlewis Mon, 2014-04-21 06:47 |
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Pyrosetta2 by bharat_46010 » Mon, 2011-02-28 05:00 |
1 |
2,605 |
by Sergey Mon, 2014-04-21 06:47 |
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how to add water into protein interface using solvated rotamers? by chinhsutran » Sun, 2013-07-21 20:25 |
1 |
2,598 |
by smlewis Mon, 2014-04-21 06:48 |
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Gradient Descent by nasim.soltani58 » Thu, 2020-10-01 16:02 |
3 |
2,598 |
by vmulligan Tue, 2020-10-06 15:13 |
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Error in loop modeling protocol its showing error "NameError: name 'ccd_closure' is not defined" by jai_INMAS » Sun, 2013-10-20 05:22 |
1 |
2,589 |
by Labonte Mon, 2014-09-08 09:13 |
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MakeRotLib documentation for Pyrosetta by ltassoulas » Sat, 2013-07-06 16:15 |
1 |
2,582 |
by jadolfbr Mon, 2014-04-21 06:48 |
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D070_Refinement.py by thorx020 » Fri, 2012-09-14 06:40 |
1 |
2,574 |
by smlewis Mon, 2014-04-21 06:47 |
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PyRosetta license by AOK » Fri, 2011-11-11 01:20 |
1 |
2,567 |
by JeffreyGray Mon, 2014-04-21 06:47 |
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403 on documentation for PyRosetta by matteoferla » Mon, 2022-06-06 12:19 |
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2,560 |
by rmoretti Mon, 2022-06-06 12:35 |
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Question about the error when using pyrosetta.distributed.io by cuiyoutian » Sun, 2019-05-19 00:54 |
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2,545 |
by rmoretti Mon, 2019-06-24 12:54 |
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Repeat study by thomashrabe » Tue, 2017-06-20 11:21 |
2 |
2,524 |
by parmef Sat, 2017-06-24 03:18 |
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Movers for unspecified DoF by tfobe » Wed, 2019-04-17 17:30 |
2 |
2,509 |
by tfobe Mon, 2019-05-20 16:05 |
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Fragment File Reading problem by Nuria » Tue, 2012-06-12 13:42 |
1 |
2,504 |
by smlewis Mon, 2014-04-21 06:47 |
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fragment for polyAAA by knutjbj » Mon, 2010-11-29 08:23 |
1 |
2,492 |
by smlewis Mon, 2014-04-21 06:47 |
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Modeling small molecules by iGemBoulder » Wed, 2019-09-18 11:53 |
2 |
2,476 |
by rmoretti Wed, 2019-09-18 14:24 |
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Falling at the first hurdle by pardave » Tue, 2010-01-05 00:53 |
1 |
2,465 |
by jadolfbr Mon, 2014-04-21 06:47 |
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generate_nonstandard_residue_set() takes exactly 2 arguments (1given) by yanghaobjordan » Mon, 2018-01-29 18:59 |
1 |
2,460 |
by rmoretti Tue, 2018-01-30 06:29 |
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Cannot get PyMOL_Observer to work on MacOS by cno » Thu, 2012-02-16 09:15 |
1 |
2,445 |
by Sergey Mon, 2014-04-21 06:47 |
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Deleting residue one produces a segmentation fault by rfschleif » Thu, 2011-06-16 07:02 |
1 |
2,426 |
by smlewis Mon, 2014-04-21 06:47 |
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Individual Residue Energy by Peik » Fri, 2021-02-19 10:13 |
2 |
2,426 |
by Peik Fri, 2021-02-19 10:30 |
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Ligand dihedral moves by lah435 » Tue, 2015-03-03 11:56 |
1 |
2,420 |
by rmoretti Fri, 2015-04-24 13:17 |
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ΔG Calculation with PyRosetta by Sandra » Tue, 2019-05-21 00:26 |
1 |
2,408 |
by rmoretti Mon, 2019-06-24 12:47 |
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Memory Issues PyRosetta? by ast » Sat, 2012-03-24 03:21 |
1 |
2,391 |
by smlewis Mon, 2014-04-21 06:47 |
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individual residue score by yijietseng » Wed, 2019-05-29 09:59 |
2 |
2,384 |
by yijietseng Fri, 2019-05-31 12:21 |
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Sample dihedral database by tiagogomes89 » Mon, 2018-03-12 04:28 |
2 |
2,383 |
by tiagogomes89 Mon, 2018-03-12 10:01 |
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Problem importing AlphaFold PDB by Rick Neubig » Mon, 2023-01-09 09:48 |
4 |
2,380 |
by Rick Neubig Tue, 2023-01-10 04:11 |
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Movemap Question by jadolfbr » Thu, 2010-01-07 11:02 |
1 |
2,375 |
by smlewis Mon, 2014-04-21 06:47 |
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Dose it support Fixed Backbone Ddg Prediction? by ppprotein » Fri, 2010-01-29 00:54 |
1 |
2,373 |
by sid Mon, 2014-04-21 06:47 |
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Custom Constraints by jinli711 » Wed, 2020-07-15 15:22 |
2 |
2,370 |
by matteoferla Fri, 2020-10-09 05:20 |
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Atom-wise energy terms from nearest N-neighbors by jasiozaucha » Thu, 2021-03-25 14:49 |
3 |
2,368 |
by matteoferla Fri, 2021-05-28 02:41 |
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[Solved]NameError by nunesjulioc » Fri, 2010-02-05 08:26 |
1 |
2,361 |
by AlexI Mon, 2014-04-21 06:47 |
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how do I compile the python bindings for rosetta3 for python2.5 linux x86_64 by tru » Wed, 2009-11-25 11:38 |
1 |
2,357 |
by luki Mon, 2014-04-21 06:47 |
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Scoring after switching back to fullatom by thorx020 » Thu, 2013-10-03 08:06 |
1 |
2,338 |
by jadolfbr Mon, 2014-04-21 06:48 |
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Replace the rotamer of a particular residue in a pose by AyushGoyal » Wed, 2014-04-02 23:45 |
1 |
2,329 |
by rmoretti Thu, 2014-04-03 07:27 |
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set_torsion_angle error by yijietseng » Tue, 2019-07-09 12:43 |
2 |
2,326 |
by yijietseng Wed, 2019-07-10 09:28 |
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Script running, but returns no results by chinhsutran » Fri, 2013-11-22 06:25 |
1 |
2,322 |
by rmoretti Mon, 2014-04-21 06:48 |
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Error when using "generate_resfile_from_pose" function by zhangying1990 » Fri, 2019-01-25 00:45 |
1 |
2,320 |
by zhangying1990 Fri, 2019-02-01 00:44 |
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how do i unding properly? by patcD » Fri, 2020-11-20 00:38 |
2 |
2,316 |
by matteoferla Fri, 2020-11-20 07:47 |
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How to create an ObjexxFCL FArray? by matteoferla » Tue, 2020-08-18 03:22 |
3 |
2,293 |
by matteoferla Thu, 2021-07-08 06:02 |
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installing PyRosetta on non-Intel-based Mac platform by sid » Tue, 2009-10-06 09:07 |
1 |
2,288 |
by JeffreyGray Mon, 2014-04-21 06:47 |
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Pose is full atom and mover expects centroid, how do I handle it the best? by hlinn » Thu, 2022-01-27 05:55 |
4 |
2,286 |
by hlinn Tue, 2022-02-08 07:23 |
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