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Rosetta 3 - Applications
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FAQ by admin » Mon, 2010-08-30 04:18 |
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17,332 |
by admin Fri, 2015-09-04 16:17 |
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help surface_docking peptide on ice by engand93 » Wed, 2019-03-27 02:43 |
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1,015 |
by engand93 Wed, 2019-03-27 02:43 |
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Error with docking_prepack_protocol while executing the tutorial "Docking Flexible Proteins" by vitoralmeida1808 » Mon, 2023-11-06 09:43 |
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254 |
by vitoralmeida1808 Mon, 2023-11-06 09:43 |
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pmut_scan_parallel by G Mustafa » Wed, 2018-10-17 05:41 |
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1,473 |
by G Mustafa Wed, 2018-10-17 05:41 |
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ligand_docking: ligand preparation by Alison_Yajie » Thu, 2020-05-21 09:42 |
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975 |
by Alison_Yajie Thu, 2020-05-21 09:42 |
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constraining different chains together in rosetta_cm by y_atsmonraz » Thu, 2021-11-18 02:59 |
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849 |
by y_atsmonraz Thu, 2021-11-18 03:01 |
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Finding lowest energy structure among generated structures by Marius1987 » Sun, 2016-04-10 11:38 |
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1,585 |
by Marius1987 Sun, 2016-04-10 12:09 |
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What means "[ ERROR ] TIME_STAMP: AbrelaxMover: finished ...NO_BATCH S_0001." by Corvin » Thu, 2020-04-02 00:16 |
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1,003 |
by Corvin Thu, 2020-04-02 00:16 |
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Helical Symmetry Axis by Sandy » Tue, 2016-05-31 18:48 |
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1,771 |
by Sandy Tue, 2016-05-31 18:48 |
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RosettaAntibody3 core.pose.util error by linhhoang157 » Tue, 2020-07-28 12:40 |
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1,015 |
by linhhoang157 Tue, 2020-07-28 12:40 |
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IL-2 gets better binding with beta / gamma by tonycheng1688 » Wed, 2022-05-25 10:23 |
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919 |
by tonycheng1688 Wed, 2022-05-25 10:23 |
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Problems with mpi version of antibody.linuxgccrelease by Sunyp_IM » Thu, 2020-05-28 23:06 |
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1,117 |
by Sunyp_IM Thu, 2020-05-28 23:07 |
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Protonating all possible sites: the problem in MOL2 file format or the innate Rosetta feature(bug)? by Corvin » Wed, 2020-12-16 04:58 |
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1,093 |
by Corvin Wed, 2020-12-30 09:21 |
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Segfault error while running MR Rosetta in Phenix by memilton » Thu, 2021-12-16 09:09 |
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1,050 |
by memilton Thu, 2021-12-16 09:09 |
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Docking HeparinSulfate to proteins using GlycanDock by GebauerJ » Tue, 2022-08-16 07:44 |
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974 |
by GebauerJ Tue, 2022-08-16 07:44 |
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new BUNS for FunFolDes run by tatsiana.bylund » Wed, 2019-08-14 20:57 |
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1,004 |
by tatsiana.bylund Wed, 2019-08-14 20:57 |
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FlexPepDock ab initio: behavior without fragment files by nrollins » Mon, 2021-07-26 14:16 |
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736 |
by nrollins Mon, 2021-07-26 14:16 |
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Setting pivots points for GenKIC by almeida85 » Tue, 2022-10-25 02:32 |
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1,697 |
by almeida85 Tue, 2022-10-25 02:32 |
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PIPER-FlexPepDock [commercial user] by Skelly » Tue, 2024-01-23 16:14 |
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325 |
by Skelly Tue, 2024-01-30 14:08 |
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Design of multimeric protein by ldlamini » Mon, 2021-01-11 07:23 |
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915 |
by ldlamini Mon, 2021-01-11 07:23 |
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ligand dock into HEM containg pdb by syntekabio2019 » Thu, 2022-01-20 03:05 |
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1,046 |
by syntekabio2019 Thu, 2022-01-20 03:05 |
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non-zero ddG of binding even without mutations by top-gun98 » Wed, 2023-06-07 17:19 |
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429 |
by top-gun98 Wed, 2023-06-07 17:19 |
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Stub Libraries for DockWithHotspotMover by ayush_patel » Sat, 2024-03-09 22:43 |
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131 |
by ayush_patel Sat, 2024-03-09 22:43 |
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Using GlycanDock and the Antibody Affinity Maturation protocol. by tbelec » Mon, 2022-02-28 12:37 |
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1,251 |
by tbelec Mon, 2022-02-28 12:37 |
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How to design the anitgen-antibody interface by Sunyp_IM » Tue, 2017-12-12 18:44 |
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1,242 |
by Sunyp_IM Tue, 2017-12-12 18:44 |
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Symmetry mode in Remodel for N-terminal extension by yvonne.chan2 » Mon, 2019-11-04 13:41 |
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1,269 |
by yvonne.chan2 Mon, 2019-11-04 13:41 |
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zero standard deviation of I_sc in protein-protein docking by rohi » Fri, 2020-07-03 22:19 |
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850 |
by rohi Fri, 2020-07-03 22:20 |
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Segfault with Pepspec by almeida85 » Thu, 2021-02-11 02:56 |
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726 |
by almeida85 Thu, 2021-02-11 02:56 |
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snugdock run error: Sequence for partner1 does not match first member of ensemble1 by pagumaaaaa » Fri, 2022-03-25 01:21 |
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953 |
by pagumaaaaa Fri, 2022-03-25 01:21 |
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Side-chain grafting at the fixed protein and position by Kazu » Wed, 2020-05-20 08:49 |
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834 |
by Kazu Wed, 2020-05-20 08:49 |
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core.pose.util: [ ERROR ] Can't find residue type 'UNK' in type set of mode fa_standard by AlfredoKCL » Sat, 2020-11-07 18:21 |
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1,332 |
by AlfredoKCL Sat, 2020-11-07 18:21 |
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prepack - residue count fails by xfradera » Fri, 2023-01-27 06:36 |
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1,220 |
by xfradera Fri, 2023-01-27 06:36 |
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Docking protein complexes when constrained by oligomer symmetry by msk » Tue, 2014-06-03 11:09 |
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1,543 |
by msk Tue, 2014-06-03 11:09 |
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Extracting top score PIPER models by almeida85 » Mon, 2020-08-31 07:17 |
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1,039 |
by almeida85 Mon, 2020-08-31 07:17 |
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Error Implementing Match Style Constraints by pwging13 » Thu, 2019-12-19 09:53 |
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1,023 |
by pwging13 Thu, 2019-12-19 09:53 |
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Can't find RosettaRemodel in Rosetta 3.4 by petrikigor » Mon, 2012-12-03 13:56 |
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1,795 |
by petrikigor Mon, 2014-04-21 06:47 |
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cartesian_ddg crashes when the mutfile contains multiple mutations to non-canonical residues by ValentinaSora » Sun, 2020-05-24 12:32 |
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1,461 |
by ValentinaSora Sun, 2020-05-24 12:32 |
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core.pose.util: (0) {0} [ ERROR ] Can't find residue type 'UNK' in type set of mode fa_standard by ldx022 » Thu, 2023-03-16 04:13 |
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1,159 |
by ldx022 Thu, 2023-03-16 04:13 |
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Symmetric assembly and output reconstruction by felipet » Wed, 2014-07-02 10:23 |
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1,492 |
by felipet Wed, 2014-07-02 10:23 |
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Molecular Replacement with multiple chains by brspurri » Fri, 2011-06-10 08:25 |
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2,187 |
by brspurri Mon, 2014-04-21 06:47 |
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algebric library for rosetta by yigallah » Mon, 2014-12-15 08:46 |
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1,437 |
by yigallah Mon, 2014-12-15 08:46 |
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appropriate sampling for protein docking to a multi chain assembly by SWM » Fri, 2020-01-24 11:22 |
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863 |
by SWM Fri, 2020-01-24 11:22 |
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Bug Report - Encoding issue by daniloboskovic » Tue, 2020-08-04 07:02 |
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774 |
by daniloboskovic Tue, 2020-08-04 07:02 |
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Weighted scores?? by sizhang » Wed, 2018-12-05 15:22 |
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1,015 |
by sizhang Wed, 2018-12-05 15:22 |
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flexpepdcok of lipid conjugated peptide with glyco protein. by ravi.thakkkar369 » Fri, 2020-12-18 13:00 |
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789 |
by ravi.thakkkar369 Fri, 2020-12-18 13:00 |
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DNA-protein docking by ksteczk » Sat, 2020-04-11 11:23 |
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1,426 |
by ksteczk Sat, 2020-04-11 11:23 |
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Pepspec Anchor Dock by Soler » Wed, 2020-09-16 19:08 |
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858 |
by Soler Wed, 2020-09-16 19:08 |
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Repacker vs minimization by Elijah_Hix » Fri, 2021-07-02 07:25 |
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687 |
by Elijah_Hix Fri, 2021-07-02 07:25 |
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Prepacking a macrocycle for docking / preserving cyclization by almeida85 » Thu, 2022-09-08 06:54 |
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859 |
by almeida85 Thu, 2022-09-08 06:54 |
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NCAA Rotamers for Cyclosporin by marinok » Mon, 2020-09-28 14:11 |
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1,226 |
by marinok Mon, 2020-09-28 14:11 |
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DNA Interface design by zadie1118 » Wed, 2011-06-22 07:05 |
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2,195 |
by zadie1118 Mon, 2014-04-21 06:47 |
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ddg_monomer: if MPI executable is reproducible and efficient? by lanselibai » Sun, 2015-01-11 09:48 |
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1,675 |
by lanselibai Sun, 2015-01-11 10:50 |
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Fusing C-terminal or N-terminal segments onto proteins using Remodel by achambe » Mon, 2016-01-04 11:26 |
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1,557 |
by achambe Mon, 2016-01-04 11:26 |
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RosettaCM by jlawrie » Fri, 2020-08-14 14:09 |
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1,527 |
by jlawrie Fri, 2020-08-14 14:09 |
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Error with RoseTTAFold by sc19 » Thu, 2022-07-14 03:40 |
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1,058 |
by sc19 Thu, 2022-07-14 03:40 |
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BridgeChains mover deletes residues at break by kmj » Thu, 2024-02-22 12:14 |
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263 |
by kmj Thu, 2024-02-22 12:14 |
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PlaceStub filter by a-eatemadi@razi... » Wed, 2017-11-15 04:19 |
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1,469 |
by a-eatemadi@razi... Mon, 2017-12-04 23:52 |
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Residue selector by Alison_Yajie » Wed, 2020-06-17 19:57 |
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886 |
by Alison_Yajie Thu, 2020-06-18 09:47 |
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FastRelaxMover parameters for antibody-antigen interaction analysis by samuel_k » Thu, 2022-01-27 01:08 |
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1,030 |
by samuel_k Thu, 2022-01-27 01:08 |
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Generating a new Vall database by vijay.anand » Tue, 2023-06-20 12:08 |
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403 |
by vijay.anand Tue, 2023-06-20 12:08 |
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Modelling humanized camelid like antibody by terabithia2011 » Tue, 2021-01-26 10:12 |
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902 |
by terabithia2011 Tue, 2021-01-26 10:12 |
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simple_cycpep_predict thioether_lariat option by Ken » Mon, 2022-03-14 15:14 |
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827 |
by Ken Mon, 2022-03-14 15:14 |
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RosettaMatch and CST files by mwfranklin » Mon, 2016-07-25 11:49 |
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2,225 |
by mwfranklin Mon, 2016-07-25 11:49 |
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how to run ala_scan.xml by xinmiaohe » Mon, 2019-08-26 09:38 |
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1,125 |
by xinmiaohe Mon, 2019-08-26 09:38 |
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minirosetta: how to reserve (inter-chain) disulfides after relax ? by lanselibai » Sat, 2015-01-24 10:56 |
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2,279 |
by lanselibai Thu, 2015-01-29 00:50 |
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Comparative Modeling Templates for Protein with Multiple Domains by Morrian_Lynn » Wed, 2020-03-04 10:42 |
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900 |
by Morrian_Lynn Wed, 2020-03-04 10:42 |
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hpatch commands and how to identify patches by Bianca Oliva » Thu, 2021-04-29 04:02 |
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980 |
by Bianca Oliva Thu, 2021-04-29 04:02 |
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CS-Rosetta cofactor by martongadanecz » Wed, 2022-08-03 01:05 |
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842 |
by martongadanecz Wed, 2022-08-03 01:05 |
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Docking the border segments of coiled coils in parallel orientation by Corvin » Mon, 2019-12-02 02:00 |
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994 |
by Corvin Mon, 2019-12-02 02:00 |
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about “protein mimic designer” by sia » Wed, 2022-04-27 19:59 |
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1,021 |
by sia Wed, 2022-04-27 19:59 |
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Fixing and Building disulfide bonds in homology modeling by kamau » Wed, 2014-09-24 11:33 |
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2,490 |
by kamau Wed, 2014-09-24 11:35 |
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Problems with waters in CoupledMoves application by Corvin » Tue, 2021-11-16 07:16 |
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912 |
by Corvin Tue, 2021-11-16 07:22 |
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How to change the axes of "-spin" in docking_protocol by Zehui Zhou » Mon, 2023-02-13 22:06 |
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2,164 |
by Zehui Zhou Mon, 2023-02-13 22:06 |
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Docking of multichain oligomers by sdh_h » Wed, 2020-03-25 12:43 |
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1,108 |
by sdh_h Wed, 2020-03-25 12:43 |
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crazy loopmodel: linear output pdbs by fred » Wed, 2014-12-03 12:27 |
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1,420 |
by fred Wed, 2014-12-03 12:28 |
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Enzyme Design Not Editing Structure by liuwenxi » Wed, 2022-05-18 10:12 |
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910 |
by liuwenxi Wed, 2022-05-18 10:12 |
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error in loop remodeling by syntekabio2019 » Wed, 2023-04-05 01:00 |
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472 |
by syntekabio2019 Wed, 2023-04-05 01:01 |
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Nanobody design by chandana » Tue, 2022-08-09 20:36 |
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1,249 |
by chandana Tue, 2022-08-09 20:36 |
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behind threading protocol by fred » Tue, 2011-10-25 05:37 |
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2,256 |
by fred Mon, 2014-04-21 06:47 |
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Pepspec - sequence sampling by almeida85 » Thu, 2022-06-23 04:05 |
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877 |
by almeida85 Thu, 2022-06-23 05:50 |
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charge grid in rosetta ligand docking using rosetta script by syntekabio2019 » Mon, 2022-01-17 23:53 |
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1,023 |
by syntekabio2019 Mon, 2022-01-17 23:53 |
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Repeatability of DDG calculation by jennifer » Wed, 2015-04-08 05:29 |
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1,642 |
by jennifer Wed, 2015-04-08 05:29 |
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structure prediction by MA » Wed, 2018-09-05 00:50 |
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1,005 |
by MA Wed, 2018-09-05 00:50 |
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Error reading in/out glycosylated silent file - "Can't create a polymer bond after residue due to incompatible type" by amorin » Mon, 2021-09-27 12:16 |
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960 |
by amorin Mon, 2021-09-27 12:16 |
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remodel: what are the exact meanings of notations for secondary structure? by lanselibai » Sat, 2015-01-17 04:53 |
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1,537 |
by lanselibai Sat, 2015-01-17 07:57 |
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DDG and interaction score problem by a-eatemadi@razi... » Mon, 2018-04-09 22:54 |
0 |
1,238 |
by a-eatemadi@razi... Mon, 2018-04-09 22:54 |
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how to generate the whole molecule that contains all the symmetric chains by Sunyp_IM » Sun, 2017-12-10 19:43 |
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1,239 |
by Sunyp_IM Sun, 2017-12-10 19:43 |
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ligand_docking: ligand preparation by Alison_Yajie » Thu, 2020-07-02 07:05 |
0 |
919 |
by Alison_Yajie Thu, 2020-07-02 07:10 |
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core.optimization.LineMinimizer: [ ERROR ] Inaccurate G! by aralz » Thu, 2021-02-11 00:46 |
0 |
980 |
by aralz Thu, 2021-02-11 00:46 |
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protein relax by Alison_Yajie » Tue, 2020-05-19 08:29 |
0 |
915 |
by Alison_Yajie Tue, 2020-05-19 08:29 |
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Grafting using antibody.mpi.linuxgccrelease and specifying custom template which doesnt have pdb id. by SubhaK » Wed, 2023-01-18 23:33 |
0 |
968 |
by SubhaK Wed, 2023-01-18 23:33 |
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score is 0 in the output? - RosettaScripts by chrisHKL » Thu, 2020-03-05 09:33 |
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986 |
by chrisHKL Thu, 2020-03-05 12:58 |
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Issues with modifying dock.xml for multiple ligand docking by DGR95 » Fri, 2021-05-14 12:51 |
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797 |
by DGR95 Fri, 2021-05-14 12:51 |
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Include MHC alpha helices in loop modelling protocol for pMHC complex by Roberto » Thu, 2022-08-04 07:22 |
0 |
853 |
by Roberto Thu, 2022-08-04 07:22 |
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using DARC in rosetta by syntekabio2019 » Thu, 2019-12-12 01:27 |
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992 |
by syntekabio2019 Thu, 2019-12-12 01:27 |
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Flex_ddG突变设计 by wangtao » Thu, 2022-05-05 02:46 |
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1,011 |
by wangtao Thu, 2022-05-05 02:46 |
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'Use_filters true' option - failure of AbInitio Relax application by Corvin » Wed, 2023-11-08 06:34 |
0 |
219 |
by Corvin Wed, 2023-11-08 06:34 |
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Lots of Prepacking Jobs for Snugdock Failing by katherinemccoy » Tue, 2023-02-28 18:17 |
0 |
2,324 |
by katherinemccoy Mon, 2023-03-13 19:10 |
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Hamiltonian Exchange by JSK » Mon, 2024-03-18 12:48 |
0 |
121 |
by JSK Tue, 2024-03-19 09:21 |
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Use membrane or non-membrane weights in RosettaCM for a hexon in virus capsid? by lanselibai » Sat, 2020-04-11 02:10 |
0 |
991 |
by lanselibai Sat, 2020-04-11 02:10 |
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