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Rosetta 3 - Applications

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Sticky topic Sticky: FAQ
by admin » Mon, 2010-08-30 04:18
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6,585 by admin
Fri, 2015-09-04 16:17
Normal topic membrane ab-initio modeling, is the quality comparable to comparative modeling of 20% id template?
by fglaser » Thu, 2011-04-07 07:57
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1,198 by fglaser
Mon, 2014-04-21 06:47
Normal topic Docking protein complexes when constrained by oligomer symmetry
by msk » Tue, 2014-06-03 11:09
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593 by msk
Tue, 2014-06-03 11:09
Normal topic How to design the anitgen-antibody interface
by Sunyp_IM » Tue, 2017-12-12 18:44
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140 by Sunyp_IM
Tue, 2017-12-12 18:44
Normal topic Symmetric assembly and output reconstruction
by felipet » Wed, 2014-07-02 10:23
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567 by felipet
Wed, 2014-07-02 10:23
Normal topic algebric library for rosetta
by yigallah » Mon, 2014-12-15 08:46
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518 by yigallah
Mon, 2014-12-15 08:46
Normal topic ddg_monomer: if MPI executable is reproducible and efficient?
by lanselibai » Sun, 2015-01-11 09:48
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557 by lanselibai
Sun, 2015-01-11 10:50
Normal topic Fusing C-terminal or N-terminal segments onto proteins using Remodel
by achambe » Mon, 2016-01-04 11:26
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444 by achambe
Mon, 2016-01-04 11:26
Normal topic PlaceStub filter
by a-eatemadi@razi... » Wed, 2017-11-15 04:19
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176 by a-eatemadi@razi...
Mon, 2017-12-04 23:52
Normal topic minirosetta: how to reserve (inter-chain) disulfides after relax ?
by lanselibai » Sat, 2015-01-24 10:56
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967 by lanselibai
Thu, 2015-01-29 00:50
Normal topic RosettaMatch and CST files
by mwfranklin » Mon, 2016-07-25 11:49
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570 by mwfranklin
Mon, 2016-07-25 11:49
Normal topic Fixing and Building disulfide bonds in homology modeling
by kamau » Wed, 2014-09-24 11:33
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1,112 by kamau
Wed, 2014-09-24 11:35
Normal topic crazy loopmodel: linear output pdbs
by fred » Wed, 2014-12-03 12:27
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549 by fred
Wed, 2014-12-03 12:28
Normal topic remodel: what are the exact meanings of notations for secondary structure?
by lanselibai » Sat, 2015-01-17 04:53
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554 by lanselibai
Sat, 2015-01-17 07:57
Normal topic DDG and interaction score problem
by a-eatemadi@razi... » Mon, 2018-04-09 22:54
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47 by a-eatemadi@razi...
Mon, 2018-04-09 22:54
Normal topic Repeatability of DDG calculation
by jennifer » Wed, 2015-04-08 05:29
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707 by jennifer
Wed, 2015-04-08 05:29
Normal topic how to generate the whole molecule that contains all the symmetric chains
by Sunyp_IM » Sun, 2017-12-10 19:43
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140 by Sunyp_IM
Sun, 2017-12-10 19:43
Normal topic PEPSPEC
by Neeraj » Wed, 2018-01-03 02:24
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128 by Neeraj
Wed, 2018-01-03 02:24
Normal topic fragment_picker bug
by David Hoover » Wed, 2012-02-29 11:43
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822 by David Hoover
Mon, 2014-04-21 06:47
Normal topic Running Rosetta CM Hybridize step errors with: Scorefunction not set up for nonideal/Cartesian scoring
by brspurri » Wed, 2017-03-29 13:19
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588 by brspurri
Wed, 2017-03-29 13:19
Normal topic Using abinition to predict a new (previously unsolved) structure.
by ac.research » Mon, 2017-01-09 00:59
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328 by ac.research
Mon, 2017-01-09 00:59
Normal topic Molecular Replacement with multiple chains
by brspurri » Fri, 2011-06-10 08:25
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1,236 by brspurri
Mon, 2014-04-21 06:47
Normal topic Reproduce Robetta's ddg values of interface alanine scan using Rosetta?
by cossio » Mon, 2015-01-19 07:14
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1,838 by cossio
Mon, 2015-01-19 07:14
Normal topic DDG_monomer ΔΔG question
by asbelx » Fri, 2018-04-20 03:31
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76 by asbelx
Fri, 2018-04-20 03:33
Normal topic DNA Interface design
by zadie1118 » Wed, 2011-06-22 07:05
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1,195 by zadie1118
Mon, 2014-04-21 06:47
Normal topic comparative modelling of a complex
by sdh_h » Sun, 2017-12-17 06:07
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127 by sdh_h
Sun, 2017-12-17 06:07
Normal topic Problem with Scoring function and PlaceStub mover
by a-eatemadi@razi... » Sat, 2018-04-07 09:22
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43 by a-eatemadi@razi...
Sat, 2018-04-07 09:24
Normal topic Can't find RosettaRemodel in Rosetta 3.4
by petrikigor » Mon, 2012-12-03 13:56
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917 by petrikigor
Mon, 2014-04-21 06:47
Normal topic Domain insertion with Non-CAA
by mwfranklin » Mon, 2017-01-16 12:30
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465 by mwfranklin
Mon, 2017-01-16 12:30
Normal topic behind threading protocol
by fred » Tue, 2011-10-25 05:37
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1,237 by fred
Mon, 2014-04-21 06:47
Normal topic wallpaper symmetry definition file
by aaj » Fri, 2016-02-26 08:40
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462 by aaj
Fri, 2016-02-26 08:40
Normal topic Interesting scoring performance in flexpepdock against random peptides
by ziqi1234 » Fri, 2017-12-08 07:52
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150 by ziqi1234
Fri, 2017-12-08 07:52
Normal topic Folding and Docking using Symmetry
by danielles » Wed, 2012-09-12 11:32
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940 by danielles
Mon, 2014-04-21 06:47
Normal topic Fragment library (vall file) from Robetta?
by alex » Sun, 2017-02-19 08:12
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387 by alex
Sun, 2017-02-19 08:12
Normal topic csrosetta.org login
by jfeuva » Tue, 2014-12-09 14:49
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23,400 by jfeuva
Tue, 2014-12-09 14:49
Normal topic Secondary Matching build_sets Error
by enmirts » Wed, 2018-03-28 10:33
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52 by enmirts
Wed, 2018-03-28 10:34
Normal topic cluster,how to get the statistic data
by MajorID » Wed, 2011-06-08 09:20
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999 by MajorID
Mon, 2014-04-21 06:47
Normal topic FloppyTail as a rosettascripts file
by tiagogomes89 » Mon, 2015-01-19 02:45
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555 by tiagogomes89
Mon, 2015-01-19 02:45
Normal topic The problems on pdb renumbering
by Sunyp_IM » Sun, 2017-08-20 06:39
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326 by Sunyp_IM
Sun, 2017-08-20 06:39
Normal topic Membrane Abinitio modeling
by bharat_46010 » Mon, 2017-03-13 22:39
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282 by bharat_46010
Mon, 2017-03-13 22:39
Normal topic backrub application, resfile, and pivot_residues
by tylerborrman » Tue, 2016-12-06 14:46
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289 by tylerborrman
Tue, 2016-12-06 14:46
Normal topic Dock two domains using topology broker
by sn » Thu, 2017-10-05 17:07
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170 by sn
Thu, 2017-10-05 17:07
Normal topic FlexPepDock Multi chain receptor
by evo_umich » Mon, 2018-04-02 12:13
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46 by evo_umich
Mon, 2018-04-02 12:13
Normal topic Pepspec options
by shaunmk » Mon, 2015-04-27 02:33
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663 by shaunmk
Mon, 2015-04-27 02:33
Normal topic Finding lowest energy structure among generated structures
by Marius1987 » Sun, 2016-04-10 11:38
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518 by Marius1987
Sun, 2016-04-10 12:09
Normal topic Helical Symmetry Axis
by Sandy » Tue, 2016-05-31 18:48
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523 by Sandy
Tue, 2016-05-31 18:48
Normal topic Output structures from docking_prepack_protocol: initial__*.pdb vs prepack__*.pdb, which one should I send to docking_protocol?
by cossio » Thu, 2015-02-05 07:10
1
927 by rmoretti
Mon, 2015-02-09 12:33
Normal topic How to preserve ACE/NME termini?
by nitroamos » Tue, 2018-05-22 13:07
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15 by nitroamos
Tue, 2018-05-22 13:19
Normal topic ERROR: unrecognized residue name 'GLY_p:RepulsiveOnly'
by smiruthi » Mon, 2011-12-12 14:27
1
1,365 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Snugdock_error
by luicui » Thu, 2017-02-09 21:06
1
342 by smlewis
Thu, 2017-02-09 21:50
Normal topic Enzyme design output silent file and score file
by deltag » Fri, 2012-09-28 13:07
1
1,092 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Using different number of 9-mers (UPDATED)
by JadAbbass » Mon, 2017-08-28 07:20
1
286 by rmoretti
Mon, 2017-09-04 10:33
Normal topic Flexible docking using rosetta density-fitting for DNA
by helm » Thu, 2012-06-14 23:43
1
1,321 by smlewis
Mon, 2014-04-21 06:47
Normal topic ligand conformer generation for enzyme design
by bo » Mon, 2013-02-11 16:51
1
1,132 by smlewis
Mon, 2014-04-21 06:47
Normal topic Interface Analyzer Segmentation Fault
by h_trasatti » Tue, 2017-02-21 12:48
1
484 by smlewis
Tue, 2017-02-21 14:10
Normal topic Design with limited number of aminoacids at given position
by sdh_h » Sun, 2016-12-04 03:44
1
495 by smlewis
Thu, 2016-12-08 15:50
Normal topic dssp
by MA » Thu, 2017-10-05 09:34
1
203 by rmoretti
Tue, 2017-10-10 09:54
Normal topic AbinitioRelax Disulfide Bonds are not being retained
by brspurri » Wed, 2011-09-28 13:55
1
2,256 by parmef
Mon, 2014-04-21 06:47
Normal topic number of structures in homology modeling for cluster analysis
by pdbb » Fri, 2013-04-12 08:52
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1,315 by smlewis
Mon, 2014-04-21 06:47
Normal topic splitfile.py
by saladi » Fri, 2018-03-30 10:31
1
72 by rmoretti
Tue, 2018-04-10 15:34
Normal topic problem with modelling of protein (140 and 150 residues respectively)
by krlitros87 » Wed, 2014-10-22 09:39
1
843 by rmoretti
Thu, 2014-10-23 13:55
Normal topic Homology modelling applies alignment wrong
by bernhardcl » Thu, 2015-08-06 09:39
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785 by bernhardcl
Tue, 2015-08-11 09:11
Normal topic comparative modeling of a homodimer
by banshee » Mon, 2017-01-09 18:34
1
502 by rmoretti
Wed, 2017-01-11 13:00
Normal topic docking with constraints
by talavera » Tue, 2013-05-07 01:50
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2,206 by rmoretti
Mon, 2014-04-21 06:47
Normal topic error mesages from RosettaDock
by AlanZhao » Mon, 2011-03-21 11:42
1
1,176 by smlewis
Mon, 2014-04-21 06:47
Normal topic Ligand docking: ERROR: set_atom_base: atoms must be bonded!
by mengzhang » Mon, 2014-05-12 12:36
1
1,271 by rmoretti
Mon, 2014-05-12 15:08
Normal topic radius of gyration as constrain
by dhirajks » Sat, 2018-05-05 23:00
1
41 by smlewis
Mon, 2018-05-07 11:42
Normal topic Antibody Modelling
by luicui » Mon, 2017-01-23 21:30
1
469 by smlewis
Mon, 2017-02-06 20:46
Normal topic blast database error
by jessye » Sun, 2017-12-03 23:59
1
160 by smlewis
Mon, 2017-12-04 12:18
Normal topic Ligand creation
by Prasanth Kumar » Fri, 2013-08-02 09:48
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1,253 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Comparative modeling
by MRH » Mon, 2013-08-19 23:08
1
1,245 by smlewis
Mon, 2014-04-21 06:48
Normal topic SymDock with constraints
by felipet » Thu, 2015-05-14 09:01
1
1,313 by rmoretti
Mon, 2015-05-25 11:49
Normal topic Binding energy contribution broken down by residue
by brspurri » Tue, 2013-07-23 12:47
1
1,368 by rmoretti
Mon, 2014-04-21 06:48
Normal topic score_jd2.linuxgccrelease documentation
by fglaser » Mon, 2011-08-01 04:08
1
2,025 by smlewis
Mon, 2014-04-21 06:47
Normal topic Holes output interpretation
by lah435 » Mon, 2012-06-04 15:02
1
1,107 by smlewis
Mon, 2014-04-21 06:47
Normal topic Executing the clean_pdb.py script
by Rkfoury » Fri, 2015-02-20 10:16
1
1,344 by lanselibai
Tue, 2015-02-24 02:36
Normal topic Enzyme Design - Score File
by nwhoppe » Thu, 2016-04-07 15:11
1
665 by rmoretti
Fri, 2016-04-08 07:39
Normal topic Comparative modeling using a two chained template for a one chain structure
by ahmadkhalifa » Mon, 2017-12-18 11:00
1
129 by rmoretti
Mon, 2018-01-15 16:14
Normal topic Representing Cross-linked nitrogens
by jjlee2 » Sat, 2011-11-26 18:42
1
1,080 by smlewis
Mon, 2014-04-21 06:47
Normal topic Surface Docking Crash (continued)
by dkozuch » Tue, 2017-09-12 06:18
1
201 by rmoretti
Tue, 2017-10-10 10:08
Normal topic relax VS. backrub
by jiongzhang » Mon, 2012-07-02 14:52
1
1,083 by smlewis
Mon, 2014-04-21 06:47
Normal topic Protein-DNA Docking using RosettaScripts?
by brspurri » Fri, 2013-06-07 09:06
1
2,274 by rmoretti
Mon, 2014-04-21 06:48
Normal topic No output with docking full protocol
by JulienO » Mon, 2016-05-30 02:16
1
557 by rmoretti
Fri, 2016-06-17 10:24
Normal topic JD2 MPI
by jrcf » Wed, 2015-10-28 14:45
1
791 by rmoretti
Sat, 2015-10-31 08:57
Normal topic RosettaLigand Docking
by Dinesh Kumar » Mon, 2018-01-15 20:54
1
139 by rmoretti
Tue, 2018-01-16 07:24
Normal topic ddg_monomer with -ddg::local_opt_only true, will it affect other chains that are close?
by cossio » Fri, 2014-12-26 13:11
1
817 by rmoretti
Tue, 2015-01-13 07:44
Normal topic cluster.linuxgccrelease Killed error
by samuelrpita » Fri, 2015-11-20 05:56
1
823 by rmoretti
Tue, 2015-11-24 16:07
Normal topic profit program in antibody design
by tzhou » Tue, 2013-10-15 23:29
1
1,410 by rmoretti
Mon, 2014-04-21 06:48
Normal topic how to generate Fragments using up to 2001 structures only
by oppopomoz » Sat, 2015-07-25 00:43
1
733 by rmoretti
Thu, 2015-08-06 08:57
Normal topic Surface accessible residue as a constraint.
by arthuc01 » Fri, 2012-03-09 23:27
1
957 by smlewis
Mon, 2014-04-21 06:47
Normal topic Rosetta_scripts error, Got some signal... It is:6
by jhm13c » Fri, 2017-04-14 14:05
1
337 by rmoretti
Sat, 2017-04-15 13:30
Normal topic Script for loop modeling: how to define loop sequence
by batch2k » Thu, 2014-10-30 12:58
1
813 by jadolfbr
Fri, 2014-10-31 08:45
Normal topic FlexPepDock in RosettaScripts keeps running
by gw » Tue, 2012-08-21 12:31
1
1,237 by smlewis
Mon, 2014-04-21 06:47
Normal topic Generating non-redundat dataset for loop models
by dario.corrada » Wed, 2016-03-09 03:00
1
555 by smlewis
Wed, 2016-03-09 04:11
Normal topic Model two domain protein
by sn » Sat, 2017-05-06 13:21
1
337 by rmoretti
Mon, 2017-05-15 08:54
Normal topic rosetta's keyword list
by fred » Tue, 2014-01-21 06:03
1
1,394 by rmoretti
Mon, 2014-04-21 06:48
Normal topic rosetta scores for mutated structures
by harshkhare » Wed, 2011-11-23 09:30
1
1,294 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Flexible peptide docking with flexible receptor backbone
by tevang » Fri, 2012-09-14 11:18
1
1,453 by smlewis
Mon, 2014-04-21 06:47
Normal topic Error with FlexPepDock
by aloshbau » Sat, 2013-08-10 11:51
1
1,293 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Snugdock+ensembledock usage
by Anouk » Mon, 2014-09-22 08:09
1
1,396 by jadolfbr
Mon, 2014-10-20 13:42

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