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Rosetta 3 - Applications

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Sticky topic Sticky: FAQ
by admin » Mon, 2010-08-30 04:18
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6,707 by admin
Fri, 2015-09-04 16:17
Normal topic FlexPepDock Multi chain receptor
by evo_umich » Mon, 2018-04-02 12:13
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142 by evo_umich
Mon, 2018-04-02 12:13
Normal topic Molecular Replacement with multiple chains
by brspurri » Fri, 2011-06-10 08:25
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1,309 by brspurri
Mon, 2014-04-21 06:47
Normal topic Pepspec options
by shaunmk » Mon, 2015-04-27 02:33
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721 by shaunmk
Mon, 2015-04-27 02:33
Normal topic DNA Interface design
by zadie1118 » Wed, 2011-06-22 07:05
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1,279 by zadie1118
Mon, 2014-04-21 06:47
Normal topic Finding lowest energy structure among generated structures
by Marius1987 » Sun, 2016-04-10 11:38
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598 by Marius1987
Sun, 2016-04-10 12:09
Normal topic Helical Symmetry Axis
by Sandy » Tue, 2016-05-31 18:48
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613 by Sandy
Tue, 2016-05-31 18:48
Normal topic structure prediction
by MA » Wed, 2018-09-05 00:50
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68 by MA
Wed, 2018-09-05 00:50
Normal topic behind threading protocol
by fred » Tue, 2011-10-25 05:37
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1,307 by fred
Mon, 2014-04-21 06:47
Normal topic How to design the anitgen-antibody interface
by Sunyp_IM » Tue, 2017-12-12 18:44
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223 by Sunyp_IM
Tue, 2017-12-12 18:44
Normal topic Docking protein complexes when constrained by oligomer symmetry
by msk » Tue, 2014-06-03 11:09
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641 by msk
Tue, 2014-06-03 11:09
Normal topic Can't find RosettaRemodel in Rosetta 3.4
by petrikigor » Mon, 2012-12-03 13:56
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969 by petrikigor
Mon, 2014-04-21 06:47
Normal topic Using residue patches in AbinitioRelax
by kent » Fri, 2018-11-02 11:19
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32 by kent
Fri, 2018-11-02 11:19
Normal topic Symmetric assembly and output reconstruction
by felipet » Wed, 2014-07-02 10:23
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603 by felipet
Wed, 2014-07-02 10:23
Normal topic algebric library for rosetta
by yigallah » Mon, 2014-12-15 08:46
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556 by yigallah
Mon, 2014-12-15 08:46
Normal topic ddg_monomer: if MPI executable is reproducible and efficient?
by lanselibai » Sun, 2015-01-11 09:48
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624 by lanselibai
Sun, 2015-01-11 10:50
Normal topic Fusing C-terminal or N-terminal segments onto proteins using Remodel
by achambe » Mon, 2016-01-04 11:26
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496 by achambe
Mon, 2016-01-04 11:26
Normal topic cluster,how to get the statistic data
by MajorID » Wed, 2011-06-08 09:20
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1,067 by MajorID
Mon, 2014-04-21 06:47
Normal topic PlaceStub filter
by a-eatemadi@razi... » Wed, 2017-11-15 04:19
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282 by a-eatemadi@razi...
Mon, 2017-12-04 23:52
Normal topic RosettaMatch and CST files
by mwfranklin » Mon, 2016-07-25 11:49
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702 by mwfranklin
Mon, 2016-07-25 11:49
Normal topic minirosetta: how to reserve (inter-chain) disulfides after relax ?
by lanselibai » Sat, 2015-01-24 10:56
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1,072 by lanselibai
Thu, 2015-01-29 00:50
Normal topic Fixing and Building disulfide bonds in homology modeling
by kamau » Wed, 2014-09-24 11:33
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1,211 by kamau
Wed, 2014-09-24 11:35
Normal topic Relax multiple PDB files with MPI, jd2, and a pdblist on TACC Stampede2
by AJVincelli » Sat, 2018-07-14 13:14
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213 by AJVincelli
Sat, 2018-07-14 13:24
Normal topic crazy loopmodel: linear output pdbs
by fred » Wed, 2014-12-03 12:27
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579 by fred
Wed, 2014-12-03 12:28
Normal topic Repeatability of DDG calculation
by jennifer » Wed, 2015-04-08 05:29
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758 by jennifer
Wed, 2015-04-08 05:29
Normal topic Flexpepdock I_hb scoring term
by mbakalar » Fri, 2018-08-31 13:05
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69 by mbakalar
Fri, 2018-08-31 13:06
Normal topic remodel: what are the exact meanings of notations for secondary structure?
by lanselibai » Sat, 2015-01-17 04:53
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602 by lanselibai
Sat, 2015-01-17 07:57
Normal topic DDG and interaction score problem
by a-eatemadi@razi... » Mon, 2018-04-09 22:54
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143 by a-eatemadi@razi...
Mon, 2018-04-09 22:54
Normal topic how to generate the whole molecule that contains all the symmetric chains
by Sunyp_IM » Sun, 2017-12-10 19:43
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222 by Sunyp_IM
Sun, 2017-12-10 19:43
Normal topic fragment_picker bug
by David Hoover » Wed, 2012-02-29 11:43
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883 by David Hoover
Mon, 2014-04-21 06:47
Normal topic PEPSPEC
by Neeraj » Wed, 2018-01-03 02:24
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202 by Neeraj
Wed, 2018-01-03 02:24
Normal topic ProteinInterfaceMS
by rbjacob » Wed, 2018-10-24 11:31
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36 by rbjacob
Wed, 2018-10-24 11:31
Normal topic Running Rosetta CM Hybridize step errors with: Scorefunction not set up for nonideal/Cartesian scoring
by brspurri » Wed, 2017-03-29 13:19
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767 by brspurri
Wed, 2017-03-29 13:19
Normal topic Using abinition to predict a new (previously unsolved) structure.
by ac.research » Mon, 2017-01-09 00:59
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391 by ac.research
Mon, 2017-01-09 00:59
Normal topic Reproduce Robetta's ddg values of interface alanine scan using Rosetta?
by cossio » Mon, 2015-01-19 07:14
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1,869 by cossio
Mon, 2015-01-19 07:14
Normal topic DDG_monomer ΔΔG question
by asbelx » Fri, 2018-04-20 03:31
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202 by asbelx
Fri, 2018-04-20 03:33
Normal topic comparative modelling of a complex
by sdh_h » Sun, 2017-12-17 06:07
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202 by sdh_h
Sun, 2017-12-17 06:07
Normal topic membrane ab-initio modeling, is the quality comparable to comparative modeling of 20% id template?
by fglaser » Thu, 2011-04-07 07:57
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1,273 by fglaser
Mon, 2014-04-21 06:47
Normal topic Warnings during relax
by cossio » Thu, 2018-10-11 14:42
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48 by cossio
Thu, 2018-10-11 14:42
Normal topic Folding and Docking using Symmetry
by danielles » Wed, 2012-09-12 11:32
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1,024 by danielles
Mon, 2014-04-21 06:47
Normal topic Problem with Scoring function and PlaceStub mover
by a-eatemadi@razi... » Sat, 2018-04-07 09:22
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132 by a-eatemadi@razi...
Sat, 2018-04-07 09:24
Normal topic Domain insertion with Non-CAA
by mwfranklin » Mon, 2017-01-16 12:30
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574 by mwfranklin
Mon, 2017-01-16 12:30
Normal topic Interesting scoring performance in flexpepdock against random peptides
by ziqi1234 » Fri, 2017-12-08 07:52
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225 by ziqi1234
Fri, 2017-12-08 07:52
Normal topic wallpaper symmetry definition file
by aaj » Fri, 2016-02-26 08:40
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513 by aaj
Fri, 2016-02-26 08:40
Normal topic Fragment library (vall file) from Robetta?
by alex » Sun, 2017-02-19 08:12
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473 by alex
Sun, 2017-02-19 08:12
Normal topic pmut_scan_parallel
by G Mustafa » Wed, 2018-10-17 05:41
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43 by G Mustafa
Wed, 2018-10-17 05:41
Normal topic csrosetta.org login
by jfeuva » Tue, 2014-12-09 14:49
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23,450 by jfeuva
Tue, 2014-12-09 14:49
Normal topic Secondary Matching build_sets Error
by enmirts » Wed, 2018-03-28 10:33
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136 by enmirts
Wed, 2018-03-28 10:34
Normal topic RosettaCM hybridize mover error after fragment picking
by amorin » Thu, 2018-09-06 11:03
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88 by amorin
Thu, 2018-09-06 11:10
Normal topic FloppyTail as a rosettascripts file
by tiagogomes89 » Mon, 2015-01-19 02:45
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592 by tiagogomes89
Mon, 2015-01-19 02:45
Normal topic The problems on pdb renumbering
by Sunyp_IM » Sun, 2017-08-20 06:39
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503 by Sunyp_IM
Sun, 2017-08-20 06:39
Normal topic docking with capping groups
by xavierfradera » Sun, 2018-11-04 16:17
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22 by xavierfradera
Sun, 2018-11-04 16:17
Normal topic Membrane Abinitio modeling
by bharat_46010 » Mon, 2017-03-13 22:39
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348 by bharat_46010
Mon, 2017-03-13 22:39
Normal topic backrub application, resfile, and pivot_residues
by tylerborrman » Tue, 2016-12-06 14:46
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332 by tylerborrman
Tue, 2016-12-06 14:46
Normal topic Dock two domains using topology broker
by sn » Thu, 2017-10-05 17:07
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244 by sn
Thu, 2017-10-05 17:07
Normal topic loopmodel issue
by chiendarret » Fri, 2012-01-27 00:51
1
1,559 by smlewis
Mon, 2014-04-21 06:47
Normal topic Ligand Docking with ARLS
by cam11 » Thu, 2016-06-23 09:34
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732 by rmoretti
Thu, 2016-06-23 10:55
Normal topic Error Interface analyser
by jrcf » Thu, 2017-06-22 12:55
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477 by smlewis
Thu, 2017-06-22 13:31
Normal topic ROSETTALIGAND: How to prepare data to plot ROC curves using rosettaligand docking result???
by Ryhon Wang » Mon, 2016-01-04 22:36
1
1,219 by rmoretti
Tue, 2016-01-05 08:35
Normal topic Symmetric docking with multiple chains as asymmetric unit
by sarah29 » Tue, 2013-11-05 20:24
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1,768 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Antibody Docking application
by Maryam_tabasinezhad » Sat, 2015-09-05 09:58
1
967 by jadolfbr
Wed, 2015-09-09 12:35
Normal topic error--rosetta fragment‐based refinement protocol for refinement against EM density
by gsuchunli » Mon, 2016-07-25 13:35
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934 by gsuchunli
Mon, 2016-07-25 13:56
Normal topic MPdocking I_sc
by jrcf » Mon, 2017-07-31 16:10
1
383 by rmoretti
Thu, 2017-08-03 09:29
Normal topic Relax with a ligand is messing up the coordinates of the ligand
by brspurri » Sat, 2015-01-24 12:39
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1,210 by rmoretti
Mon, 2015-01-26 12:15
Normal topic Difference between movemap and -pivot_residues
by aloshbau » Wed, 2016-02-24 13:21
1
762 by rmoretti
Wed, 2016-02-24 14:39
Normal topic weights for pH_protocol
by fmerino » Wed, 2017-04-26 07:14
1
468 by rmoretti
Thu, 2017-04-27 07:10
Normal topic broker domain insertion
by dhirajks » Sun, 2018-05-06 12:55
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160 by rmoretti
Fri, 2018-05-18 12:28
Normal topic Fragment Files
by nkemjika » Fri, 2011-07-22 15:11
1
1,619 by dgront
Mon, 2014-04-21 06:47
Normal topic Rosetta Holes
by zsun12 » Wed, 2015-09-30 11:40
1
1,506 by rmoretti
Mon, 2015-10-12 15:20
Normal topic cartfrag_overlap error while running hybridize protocol
by sn » Thu, 2017-12-21 10:24
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261 by rmoretti
Mon, 2018-01-15 16:07
Normal topic fold and dock protocol not working
by ytao » Mon, 2012-11-26 15:33
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1,179 by smlewis
Mon, 2014-04-21 06:47
Normal topic submit_NGK.py not creating output files
by nkato2 » Wed, 2013-08-28 23:37
1
1,327 by rmoretti
Mon, 2014-04-21 06:48
Normal topic why is talaris2014 scoring fuction not used with ligand docking?
by banshee » Fri, 2016-09-09 01:19
1
783 by rmoretti
Fri, 2016-09-09 07:47
Normal topic Predicting the part of protein strcutrue
by ksy141 » Tue, 2018-10-16 11:47
1
49 by jadolfbr
Fri, 2018-11-09 14:28
Normal topic Fastrelax problem
by Pernille » Tue, 2014-06-17 08:59
1
914 by Pernille
Fri, 2014-06-20 00:17
Normal topic Error in a new docking
by jrcf » Wed, 2017-05-17 19:26
1
709 by everyday847
Wed, 2017-05-17 20:03
Normal topic creating a model using a base pdb and extending a chain
by rlwoltz » Fri, 2013-07-12 15:35
1
1,364 by nawsad
Mon, 2014-04-21 06:48
Normal topic rosetta 3.3 - antibody
by ron amon » Mon, 2014-07-21 00:44
1
1,066 by rmoretti
Mon, 2014-07-21 10:51
Normal topic References where Rosetta is used to compute ddG of binding after mutation?
by cossio » Tue, 2015-03-17 05:13
1
1,199 by rmoretti
Wed, 2015-03-25 11:33
Normal topic Loop modeling/closure for many structures
by sn » Mon, 2017-03-06 11:25
1
415 by rmoretti
Mon, 2017-03-06 12:39
Normal topic Place ligand in a pocket
by sn » Fri, 2017-09-15 12:53
1
341 by rmoretti
Fri, 2017-09-15 13:11
Normal topic Incorporating iron-sulfur cluster into ROSETTA applications
by Derek Smith » Thu, 2014-08-14 23:12
1
1,152 by rmoretti
Fri, 2014-08-15 08:06
Normal topic Fixing part of a ligand in dock-design
by hssnzdh2 » Mon, 2015-11-23 17:14
1
769 by rmoretti
Tue, 2015-11-24 16:16
Normal topic ERROR: unrecognized residue name 'GLY_p:RepulsiveOnly'
by smiruthi » Mon, 2011-12-12 14:27
1
1,453 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Packstat application output
by Vedasheersh » Mon, 2017-07-03 02:45
1
432 by rmoretti
Mon, 2017-07-03 09:17
Normal topic Enzyme design output silent file and score file
by deltag » Fri, 2012-09-28 13:07
1
1,165 by rmoretti
Mon, 2014-04-21 06:47
Normal topic ambiguous constraints
by shrutikhare » Mon, 2014-05-12 04:42
1
1,629 by rmoretti
Mon, 2014-05-12 08:25
Normal topic How to build disulfide bond between two cysteine, i.e. change two "-SH" (sulfydryl) into "-S-S-"?
by lanselibai » Sat, 2015-01-17 11:19
1
1,369 by lanselibai
Wed, 2015-01-21 02:40
Normal topic Coding denovo prediction from density maps in PyRosetta
by ahmadkhalifa » Tue, 2018-04-10 11:43
1
150 by rmoretti
Tue, 2018-04-10 15:29
Normal topic Flexible docking using rosetta density-fitting for DNA
by helm » Thu, 2012-06-14 23:43
1
1,405 by smlewis
Mon, 2014-04-21 06:47
Normal topic Snugdock_error
by luicui » Thu, 2017-02-09 21:06
1
407 by smlewis
Thu, 2017-02-09 21:50
Normal topic RosettaAntibody core.pose.util error
by rishibedi » Fri, 2018-10-05 01:31
1
67 by jadolfbr
Fri, 2018-11-09 14:53
Normal topic Add missing residues in loop modeling
by exchhattu » Thu, 2013-06-20 17:38
1
1,944 by smlewis
Mon, 2014-04-21 06:48
Normal topic Output structures from docking_prepack_protocol: initial__*.pdb vs prepack__*.pdb, which one should I send to docking_protocol?
by cossio » Thu, 2015-02-05 07:10
1
979 by rmoretti
Mon, 2015-02-09 12:33
Normal topic Interface Analyzer Segmentation Fault
by h_trasatti » Tue, 2017-02-21 12:48
1
596 by smlewis
Tue, 2017-02-21 14:10
Normal topic problem when exact pdb from silent file
by wenchangyu2008 » Mon, 2011-04-18 00:42
1
1,713 by wenchangyu2008
Mon, 2014-04-21 06:47
Normal topic Using different number of 9-mers (UPDATED)
by JadAbbass » Mon, 2017-08-28 07:20
1
436 by rmoretti
Mon, 2017-09-04 10:33
Normal topic Question on restraining receptor symmetry when docking ligand
by subha » Fri, 2018-07-06 21:59
1
116 by rmoretti
Fri, 2018-08-03 08:16
Normal topic Design with limited number of aminoacids at given position
by sdh_h » Sun, 2016-12-04 03:44
1
565 by smlewis
Thu, 2016-12-08 15:50
Normal topic dssp
by MA » Thu, 2017-10-05 09:34
1
330 by rmoretti
Tue, 2017-10-10 09:54

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