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Rosetta 3 - Applications

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Sticky topic Sticky: FAQ
by admin » Mon, 2010-08-30 04:18
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6,457 by admin
Fri, 2015-09-04 16:17
Normal topic algebric library for rosetta
by yigallah » Mon, 2014-12-15 08:46
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450 by yigallah
Mon, 2014-12-15 08:46
Normal topic ddg_monomer: if MPI executable is reproducible and efficient?
by lanselibai » Sun, 2015-01-11 09:48
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490 by lanselibai
Sun, 2015-01-11 10:50
Normal topic Fusing C-terminal or N-terminal segments onto proteins using Remodel
by achambe » Mon, 2016-01-04 11:26
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372 by achambe
Mon, 2016-01-04 11:26
Normal topic PlaceStub filter
by a-eatemadi@razi... » Wed, 2017-11-15 04:19
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24 by a-eatemadi@razi...
Wed, 2017-11-15 04:19
Normal topic RosettaMatch and CST files
by mwfranklin » Mon, 2016-07-25 11:49
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425 by mwfranklin
Mon, 2016-07-25 11:49
Normal topic minirosetta: how to reserve (inter-chain) disulfides after relax ?
by lanselibai » Sat, 2015-01-24 10:56
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850 by lanselibai
Thu, 2015-01-29 00:50
Normal topic Fixing and Building disulfide bonds in homology modeling
by kamau » Wed, 2014-09-24 11:33
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978 by kamau
Wed, 2014-09-24 11:35
Normal topic crazy loopmodel: linear output pdbs
by fred » Wed, 2014-12-03 12:27
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488 by fred
Wed, 2014-12-03 12:28
Normal topic fragment_picker bug
by David Hoover » Wed, 2012-02-29 11:43
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755 by David Hoover
Mon, 2014-04-21 06:47
Normal topic remodel: what are the exact meanings of notations for secondary structure?
by lanselibai » Sat, 2015-01-17 04:53
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501 by lanselibai
Sat, 2015-01-17 07:57
Normal topic Repeatability of DDG calculation
by jennifer » Wed, 2015-04-08 05:29
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645 by jennifer
Wed, 2015-04-08 05:29
Normal topic Running Rosetta CM Hybridize step errors with: Scorefunction not set up for nonideal/Cartesian scoring
by brspurri » Wed, 2017-03-29 13:19
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319 by brspurri
Wed, 2017-03-29 13:19
Normal topic Using abinition to predict a new (previously unsolved) structure.
by ac.research » Mon, 2017-01-09 00:59
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235 by ac.research
Mon, 2017-01-09 00:59
Normal topic membrane ab-initio modeling, is the quality comparable to comparative modeling of 20% id template?
by fglaser » Thu, 2011-04-07 07:57
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1,118 by fglaser
Mon, 2014-04-21 06:47
Normal topic Reproduce Robetta's ddg values of interface alanine scan using Rosetta?
by cossio » Mon, 2015-01-19 07:14
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1,775 by cossio
Mon, 2015-01-19 07:14
Normal topic Folding and Docking using Symmetry
by danielles » Wed, 2012-09-12 11:32
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843 by danielles
Mon, 2014-04-21 06:47
Normal topic Domain insertion with Non-CAA
by mwfranklin » Mon, 2017-01-16 12:30
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302 by mwfranklin
Mon, 2017-01-16 12:30
Normal topic wallpaper symmetry definition file
by aaj » Fri, 2016-02-26 08:40
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393 by aaj
Fri, 2016-02-26 08:40
Normal topic Fragment library (vall file) from Robetta?
by alex » Sun, 2017-02-19 08:12
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242 by alex
Sun, 2017-02-19 08:12
Normal topic csrosetta.org login
by jfeuva » Tue, 2014-12-09 14:49
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23,342 by jfeuva
Tue, 2014-12-09 14:49
Normal topic FloppyTail as a rosettascripts file
by tiagogomes89 » Mon, 2015-01-19 02:45
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507 by tiagogomes89
Mon, 2015-01-19 02:45
Normal topic The problems on pdb renumbering
by Sunyp_IM » Sun, 2017-08-20 06:39
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112 by Sunyp_IM
Sun, 2017-08-20 06:39
Normal topic Molecular Replacement with multiple chains
by brspurri » Fri, 2011-06-10 08:25
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1,127 by brspurri
Mon, 2014-04-21 06:47
Normal topic Membrane Abinitio modeling
by bharat_46010 » Mon, 2017-03-13 22:39
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177 by bharat_46010
Mon, 2017-03-13 22:39
Normal topic DNA Interface design
by zadie1118 » Wed, 2011-06-22 07:05
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1,091 by zadie1118
Mon, 2014-04-21 06:47
Normal topic backrub application, resfile, and pivot_residues
by tylerborrman » Tue, 2016-12-06 14:46
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209 by tylerborrman
Tue, 2016-12-06 14:46
Normal topic Dock two domains using topology broker
by sn » Thu, 2017-10-05 17:07
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59 by sn
Thu, 2017-10-05 17:07
Normal topic Pepspec options
by shaunmk » Mon, 2015-04-27 02:33
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605 by shaunmk
Mon, 2015-04-27 02:33
Normal topic Finding lowest energy structure among generated structures
by Marius1987 » Sun, 2016-04-10 11:38
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407 by Marius1987
Sun, 2016-04-10 12:09
Normal topic Helical Symmetry Axis
by Sandy » Tue, 2016-05-31 18:48
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412 by Sandy
Tue, 2016-05-31 18:48
Normal topic behind threading protocol
by fred » Tue, 2011-10-25 05:37
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1,124 by fred
Mon, 2014-04-21 06:47
Normal topic Docking protein complexes when constrained by oligomer symmetry
by msk » Tue, 2014-06-03 11:09
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539 by msk
Tue, 2014-06-03 11:09
Normal topic cluster,how to get the statistic data
by MajorID » Wed, 2011-06-08 09:20
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916 by MajorID
Mon, 2014-04-21 06:47
Normal topic Can't find RosettaRemodel in Rosetta 3.4
by petrikigor » Mon, 2012-12-03 13:56
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808 by petrikigor
Mon, 2014-04-21 06:47
Normal topic Symmetric assembly and output reconstruction
by felipet » Wed, 2014-07-02 10:23
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509 by felipet
Wed, 2014-07-02 10:23
Normal topic relax VS. backrub
by jiongzhang » Mon, 2012-07-02 14:52
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972 by smlewis
Mon, 2014-04-21 06:47
Normal topic Design with limited number of aminoacids at given position
by sdh_h » Sun, 2016-12-04 03:44
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361 by smlewis
Thu, 2016-12-08 15:50
Normal topic dssp
by MA » Thu, 2017-10-05 09:34
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60 by rmoretti
Tue, 2017-10-10 09:54
Normal topic No interface for protein - Interface Analyzer
by aloshbau » Tue, 2013-05-21 21:00
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1,436 by jarod
Mon, 2014-04-21 06:47
Normal topic problem with modelling of protein (140 and 150 residues respectively)
by krlitros87 » Wed, 2014-10-22 09:39
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749 by rmoretti
Thu, 2014-10-23 13:55
Normal topic Homology modelling applies alignment wrong
by bernhardcl » Thu, 2015-08-06 09:39
1
699 by bernhardcl
Tue, 2015-08-11 09:11
Normal topic comparative modeling of a homodimer
by banshee » Mon, 2017-01-09 18:34
1
338 by rmoretti
Wed, 2017-01-11 13:00
Normal topic placing a constraint during structure prediction
by cbala » Thu, 2011-04-07 08:54
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1,610 by ic3reyes
Mon, 2014-04-21 06:47
Normal topic Surface accessible residue as a constraint.
by arthuc01 » Fri, 2012-03-09 23:27
1
876 by smlewis
Mon, 2014-04-21 06:47
Normal topic Ligand creation
by Prasanth Kumar » Fri, 2013-08-02 09:48
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1,160 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Ligand docking: ERROR: set_atom_base: atoms must be bonded!
by mengzhang » Mon, 2014-05-12 12:36
1
1,184 by rmoretti
Mon, 2014-05-12 15:08
Normal topic FlexPepDock in RosettaScripts keeps running
by gw » Tue, 2012-08-21 12:31
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1,131 by smlewis
Mon, 2014-04-21 06:47
Normal topic Antibody Modelling
by luicui » Mon, 2017-01-23 21:30
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339 by smlewis
Mon, 2017-02-06 20:46
Normal topic Destination of score.fsc file
by anirbanzz » Wed, 2011-04-20 23:30
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1,233 by smlewis
Mon, 2014-04-21 06:47
Normal topic Comparative modeling
by MRH » Mon, 2013-08-19 23:08
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1,164 by smlewis
Mon, 2014-04-21 06:48
Normal topic SymDock with constraints
by felipet » Thu, 2015-05-14 09:01
1
1,153 by rmoretti
Mon, 2015-05-25 11:49
Normal topic trouble in floppytail modelling
by ytao » Thu, 2013-06-27 13:15
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1,128 by ytao
Mon, 2014-04-21 06:48
Normal topic Executing the clean_pdb.py script
by Rkfoury » Fri, 2015-02-20 10:16
1
1,151 by lanselibai
Tue, 2015-02-24 02:36
Normal topic Enzyme Design - Score File
by nwhoppe » Thu, 2016-04-07 15:11
1
539 by rmoretti
Fri, 2016-04-08 07:39
Normal topic Flexible peptide docking with flexible receptor backbone
by tevang » Fri, 2012-09-14 11:18
1
1,339 by smlewis
Mon, 2014-04-21 06:47
Normal topic score and relax
by Prasanth Kumar » Thu, 2013-05-02 05:09
1
1,731 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic JD2 MPI
by jrcf » Wed, 2015-10-28 14:45
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654 by rmoretti
Sat, 2015-10-31 08:57
Normal topic Surface Docking Crash (continued)
by dkozuch » Tue, 2017-09-12 06:18
1
73 by rmoretti
Tue, 2017-10-10 10:08
Normal topic No output with docking full protocol
by JulienO » Mon, 2016-05-30 02:16
1
460 by rmoretti
Fri, 2016-06-17 10:24
Normal topic modeling 4 linkers between 2 domains
by pdbb » Thu, 2013-05-16 08:23
1
1,086 by smlewis
Mon, 2014-04-21 06:47
Normal topic ddg_monomer with -ddg::local_opt_only true, will it affect other chains that are close?
by cossio » Fri, 2014-12-26 13:11
1
702 by rmoretti
Tue, 2015-01-13 07:44
Normal topic cluster.linuxgccrelease Killed error
by samuelrpita » Fri, 2015-11-20 05:56
1
677 by rmoretti
Tue, 2015-11-24 16:07
Normal topic profit program in antibody design
by tzhou » Tue, 2013-10-15 23:29
1
1,310 by rmoretti
Mon, 2014-04-21 06:48
Normal topic how to generate Fragments using up to 2001 structures only
by oppopomoz » Sat, 2015-07-25 00:43
1
648 by rmoretti
Thu, 2015-08-06 08:57
Normal topic Filtering while clustering
by David Hoover » Wed, 2011-03-30 07:03
1
1,177 by smlewis
Mon, 2014-04-21 06:47
Normal topic Rosetta_scripts error, Got some signal... It is:6
by jhm13c » Fri, 2017-04-14 14:05
1
179 by rmoretti
Sat, 2017-04-15 13:30
Normal topic Script for loop modeling: how to define loop sequence
by batch2k » Thu, 2014-10-30 12:58
1
703 by jadolfbr
Fri, 2014-10-31 08:45
Normal topic Error with FlexPepDock
by aloshbau » Sat, 2013-08-10 11:51
1
1,195 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Snugdock+ensembledock usage
by Anouk » Mon, 2014-09-22 08:09
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1,297 by jadolfbr
Mon, 2014-10-20 13:42
Normal topic Should I trust the score output from relax used with a protein complex?
by cossio » Thu, 2015-05-07 06:08
1
696 by rmoretti
Mon, 2015-05-25 12:37
Normal topic interface_delta ligand_docking
by Prasanth Kumar » Tue, 2013-06-18 08:37
1
1,172 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Generating non-redundat dataset for loop models
by dario.corrada » Wed, 2016-03-09 03:00
1
447 by smlewis
Wed, 2016-03-09 04:11
Normal topic Model two domain protein
by sn » Sat, 2017-05-06 13:21
1
193 by rmoretti
Mon, 2017-05-15 08:54
Normal topic rosetta's keyword list
by fred » Tue, 2014-01-21 06:03
1
1,305 by rmoretti
Mon, 2014-04-21 06:48
Normal topic homology membrane modeling demo in rosetta 3.5
by rlwoltz » Mon, 2013-09-09 10:26
1
1,463 by smlewis
Mon, 2014-04-21 06:48
Normal topic Syntax to extract PDB files from a silent file
by lanselibai » Fri, 2014-09-26 13:48
1
1,047 by lanselibai
Fri, 2014-09-26 14:58
Normal topic membrane modeling error
by benniu2004 » Mon, 2013-07-01 17:59
1
1,167 by smlewis
Mon, 2014-04-21 06:48
Normal topic Failed glycine check when running RosettaRemodel to build disulfide
by cheyuk » Fri, 2014-06-27 02:31
1
705 by everyday847
Sun, 2014-09-28 21:16
Normal topic Design a peptide linked to small molecule ligand
by shaunmk » Mon, 2015-03-02 09:05
1
911 by rmoretti
Wed, 2015-03-25 12:39
Normal topic sequence design to enhance Fc / Fc-g Receptor binding
by jarod » Tue, 2017-05-23 09:00
1
187 by jadolfbr
Thu, 2017-06-01 10:00
Normal topic contents of span file
by tevang » Mon, 2013-04-15 05:01
1
1,130 by smlewis
Mon, 2014-04-21 06:47
Normal topic heads up for constraints using GAUSSIANFUNC
by attesor » Thu, 2015-10-22 07:30
1
512 by smlewis
Thu, 2015-10-22 08:04
Normal topic Docking prepack vs. relax
by David Weis » Tue, 2017-02-21 05:37
1
258 by smlewis
Tue, 2017-02-21 07:58
Normal topic InterfaceAnalyzer -resfile
by gw » Wed, 2011-11-02 16:01
1
1,200 by smlewis
Mon, 2014-04-21 06:47
Normal topic Options for Enzdes RosettaScripts
by joeg » Wed, 2014-03-12 09:28
1
1,034 by rmoretti
Thu, 2014-03-13 08:04
Normal topic Segmentation fault when running Abinito Relax
by Hongtham » Mon, 2014-12-15 07:16
1
1,151 by rmoretti
Fri, 2015-01-02 11:45
Normal topic Protein/Protein Ddg demo: How to write predicted mutant structures?
by cossio » Wed, 2015-11-04 20:14
1
512 by rmoretti
Tue, 2015-11-10 11:10
Normal topic cluster error
by sudhar » Fri, 2011-06-17 05:58
1
1,318 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Full Protocol
by shekhar » Fri, 2013-10-04 01:07
1
1,516 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Docking with loop rebuilding
by kxiao » Sun, 2015-06-28 19:37
1
695 by rmoretti
Fri, 2015-07-03 14:41
Normal topic Ddg_monomer: implementing disulfides
by kabol » Wed, 2016-11-30 02:39
1
366 by rmoretti
Wed, 2016-11-30 07:46
Normal topic Unsatisfied interface H-bond in Ligand docking
by Prasanth Kumar » Thu, 2013-07-18 12:04
1
2,193 by rmoretti
Mon, 2014-04-21 06:48
Normal topic relax job failed
by albumns » Sat, 2014-07-26 00:21
1
709 by rmoretti
Sun, 2014-07-27 10:48
Normal topic How to calculate dG?
by yperez » Mon, 2012-10-22 07:28
1
1,169 by smlewis
Mon, 2014-04-21 06:47
Normal topic CartesianRefiner compilation problem
by DmitriiN » Tue, 2015-12-15 08:52
1
537 by rmoretti
Tue, 2015-12-15 09:48
Normal topic restrain residues in docking
by albumns » Sat, 2013-11-02 08:52
1
1,257 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic autoNOE peak lists
by aep » Thu, 2015-08-06 06:15
1
661 by sgourn
Tue, 2015-08-18 18:25
Normal topic UnfoldedStateEnergyCalculator MPI Error
by colin.walsh.brown » Mon, 2017-11-13 09:43
1
21 by smlewis
Mon, 2017-11-13 10:43
Normal topic error--rosetta fragment‐based refinement protocol for refinement against EM density
by gsuchunli » Wed, 2016-07-06 10:35
1
494 by rmoretti
Tue, 2016-07-12 08:56

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