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Rosetta 3 - Applications

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Sticky topic Sticky: FAQ
by admin » Mon, 2010-08-30 04:18
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6,413 by admin
Fri, 2015-09-04 16:17
Normal topic Docking protein complexes when constrained by oligomer symmetry
by msk » Tue, 2014-06-03 11:09
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518 by msk
Tue, 2014-06-03 11:09
Normal topic cluster,how to get the statistic data
by MajorID » Wed, 2011-06-08 09:20
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879 by MajorID
Mon, 2014-04-21 06:47
Normal topic Symmetric assembly and output reconstruction
by felipet » Wed, 2014-07-02 10:23
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484 by felipet
Wed, 2014-07-02 10:23
Normal topic algebric library for rosetta
by yigallah » Mon, 2014-12-15 08:46
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425 by yigallah
Mon, 2014-12-15 08:46
Normal topic ddg_monomer: if MPI executable is reproducible and efficient?
by lanselibai » Sun, 2015-01-11 09:48
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461 by lanselibai
Sun, 2015-01-11 10:50
Normal topic Fusing C-terminal or N-terminal segments onto proteins using Remodel
by achambe » Mon, 2016-01-04 11:26
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348 by achambe
Mon, 2016-01-04 11:26
Normal topic RosettaMatch and CST files
by mwfranklin » Mon, 2016-07-25 11:49
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376 by mwfranklin
Mon, 2016-07-25 11:49
Normal topic minirosetta: how to reserve (inter-chain) disulfides after relax ?
by lanselibai » Sat, 2015-01-24 10:56
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793 by lanselibai
Thu, 2015-01-29 00:50
Normal topic Fixing and Building disulfide bonds in homology modeling
by kamau » Wed, 2014-09-24 11:33
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929 by kamau
Wed, 2014-09-24 11:35
Normal topic crazy loopmodel: linear output pdbs
by fred » Wed, 2014-12-03 12:27
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458 by fred
Wed, 2014-12-03 12:28
Normal topic Surface Docking Crash (continued)
by dkozuch » Tue, 2017-09-12 06:18
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18 by dkozuch
Tue, 2017-09-12 06:18
Normal topic fragment_picker bug
by David Hoover » Wed, 2012-02-29 11:43
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727 by David Hoover
Mon, 2014-04-21 06:47
Normal topic Repeatability of DDG calculation
by jennifer » Wed, 2015-04-08 05:29
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619 by jennifer
Wed, 2015-04-08 05:29
Normal topic remodel: what are the exact meanings of notations for secondary structure?
by lanselibai » Sat, 2015-01-17 04:53
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476 by lanselibai
Sat, 2015-01-17 07:57
Normal topic Running Rosetta CM Hybridize step errors with: Scorefunction not set up for nonideal/Cartesian scoring
by brspurri » Wed, 2017-03-29 13:19
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241 by brspurri
Wed, 2017-03-29 13:19
Normal topic membrane ab-initio modeling, is the quality comparable to comparative modeling of 20% id template?
by fglaser » Thu, 2011-04-07 07:57
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1,087 by fglaser
Mon, 2014-04-21 06:47
Normal topic Using abinition to predict a new (previously unsolved) structure.
by ac.research » Mon, 2017-01-09 00:59
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191 by ac.research
Mon, 2017-01-09 00:59
Normal topic Reproduce Robetta's ddg values of interface alanine scan using Rosetta?
by cossio » Mon, 2015-01-19 07:14
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1,740 by cossio
Mon, 2015-01-19 07:14
Normal topic Folding and Docking using Symmetry
by danielles » Wed, 2012-09-12 11:32
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819 by danielles
Mon, 2014-04-21 06:47
Normal topic Can't find RosettaRemodel in Rosetta 3.4
by petrikigor » Mon, 2012-12-03 13:56
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774 by petrikigor
Mon, 2014-04-21 06:47
Normal topic Domain insertion with Non-CAA
by mwfranklin » Mon, 2017-01-16 12:30
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243 by mwfranklin
Mon, 2017-01-16 12:30
Normal topic wallpaper symmetry definition file
by aaj » Fri, 2016-02-26 08:40
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361 by aaj
Fri, 2016-02-26 08:40
Normal topic Fragment library (vall file) from Robetta?
by alex » Sun, 2017-02-19 08:12
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202 by alex
Sun, 2017-02-19 08:12
Normal topic csrosetta.org login
by jfeuva » Tue, 2014-12-09 14:49
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23,312 by jfeuva
Tue, 2014-12-09 14:49
Normal topic FloppyTail as a rosettascripts file
by tiagogomes89 » Mon, 2015-01-19 02:45
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483 by tiagogomes89
Mon, 2015-01-19 02:45
Normal topic The problems on pdb renumbering
by Sunyp_IM » Sun, 2017-08-20 06:39
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47 by Sunyp_IM
Sun, 2017-08-20 06:39
Normal topic Molecular Replacement with multiple chains
by brspurri » Fri, 2011-06-10 08:25
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1,094 by brspurri
Mon, 2014-04-21 06:47
Normal topic DNA Interface design
by zadie1118 » Wed, 2011-06-22 07:05
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1,057 by zadie1118
Mon, 2014-04-21 06:47
Normal topic Membrane Abinitio modeling
by bharat_46010 » Mon, 2017-03-13 22:39
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138 by bharat_46010
Mon, 2017-03-13 22:39
Normal topic backrub application, resfile, and pivot_residues
by tylerborrman » Tue, 2016-12-06 14:46
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176 by tylerborrman
Tue, 2016-12-06 14:46
Normal topic Pepspec options
by shaunmk » Mon, 2015-04-27 02:33
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580 by shaunmk
Mon, 2015-04-27 02:33
Normal topic Finding lowest energy structure among generated structures
by Marius1987 » Sun, 2016-04-10 11:38
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360 by Marius1987
Sun, 2016-04-10 12:09
Normal topic Helical Symmetry Axis
by Sandy » Tue, 2016-05-31 18:48
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366 by Sandy
Tue, 2016-05-31 18:48
Normal topic behind threading protocol
by fred » Tue, 2011-10-25 05:37
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1,093 by fred
Mon, 2014-04-21 06:47
Normal topic Incorporating iron-sulfur cluster into ROSETTA applications
by Derek Smith » Thu, 2014-08-14 23:12
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897 by rmoretti
Fri, 2014-08-15 08:06
Normal topic Fixing part of a ligand in dock-design
by hssnzdh2 » Mon, 2015-11-23 17:14
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506 by rmoretti
Tue, 2015-11-24 16:16
Normal topic pmut_scan does not produce log file
by fglaser » Wed, 2013-10-16 07:25
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1,407 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Packstat application output
by Vedasheersh » Mon, 2017-07-03 02:45
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91 by rmoretti
Mon, 2017-07-03 09:17
Normal topic ambiguous constraints
by shrutikhare » Mon, 2014-05-12 04:42
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1,332 by rmoretti
Mon, 2014-05-12 08:25
Normal topic How to build disulfide bond between two cysteine, i.e. change two "-SH" (sulfydryl) into "-S-S-"?
by lanselibai » Sat, 2015-01-17 11:19
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1,055 by lanselibai
Wed, 2015-01-21 02:40
Normal topic problem when exact pdb from silent file
by wenchangyu2008 » Mon, 2011-04-18 00:42
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1,470 by wenchangyu2008
Mon, 2014-04-21 06:47
Normal topic Snugdock_error
by luicui » Thu, 2017-02-09 21:06
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177 by smlewis
Thu, 2017-02-09 21:50
Normal topic Output structures from docking_prepack_protocol: initial__*.pdb vs prepack__*.pdb, which one should I send to docking_protocol?
by cossio » Thu, 2015-02-05 07:10
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772 by rmoretti
Mon, 2015-02-09 12:33
Normal topic ligand conformer generation for enzyme design
by bo » Mon, 2013-02-11 16:51
1
982 by smlewis
Mon, 2014-04-21 06:47
Normal topic Interface Analyzer Segmentation Fault
by h_trasatti » Tue, 2017-02-21 12:48
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232 by smlewis
Tue, 2017-02-21 14:10
Normal topic Holes output interpretation
by lah435 » Mon, 2012-06-04 15:02
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938 by smlewis
Mon, 2014-04-21 06:47
Normal topic Using different number of 9-mers (UPDATED)
by JadAbbass » Mon, 2017-08-28 07:20
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55 by rmoretti
Mon, 2017-09-04 10:33
Normal topic Standalone alanine scanning protocol
by exchhattu » Thu, 2011-10-13 19:40
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2,430 by smlewis
Mon, 2014-04-21 06:47
Normal topic relax VS. backrub
by jiongzhang » Mon, 2012-07-02 14:52
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931 by smlewis
Mon, 2014-04-21 06:47
Normal topic Design with limited number of aminoacids at given position
by sdh_h » Sun, 2016-12-04 03:44
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285 by smlewis
Thu, 2016-12-08 15:50
Normal topic number of structures in homology modeling for cluster analysis
by pdbb » Fri, 2013-04-12 08:52
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1,191 by smlewis
Mon, 2014-04-21 06:47
Normal topic placing a constraint during structure prediction
by cbala » Thu, 2011-04-07 08:54
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1,564 by ic3reyes
Mon, 2014-04-21 06:47
Normal topic problem with modelling of protein (140 and 150 residues respectively)
by krlitros87 » Wed, 2014-10-22 09:39
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714 by rmoretti
Thu, 2014-10-23 13:55
Normal topic Homology modelling applies alignment wrong
by bernhardcl » Thu, 2015-08-06 09:39
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648 by bernhardcl
Tue, 2015-08-11 09:11
Normal topic comparative modeling of a homodimer
by banshee » Mon, 2017-01-09 18:34
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277 by rmoretti
Wed, 2017-01-11 13:00
Normal topic Surface accessible residue as a constraint.
by arthuc01 » Fri, 2012-03-09 23:27
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838 by smlewis
Mon, 2014-04-21 06:47
Normal topic Ligand creation
by Prasanth Kumar » Fri, 2013-08-02 09:48
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1,121 by rmoretti
Mon, 2014-04-21 06:48
Normal topic docking with constraints
by talavera » Tue, 2013-05-07 01:50
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2,007 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Ligand docking: ERROR: set_atom_base: atoms must be bonded!
by mengzhang » Mon, 2014-05-12 12:36
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1,145 by rmoretti
Mon, 2014-05-12 15:08
Normal topic FlexPepDock in RosettaScripts keeps running
by gw » Tue, 2012-08-21 12:31
1
1,078 by smlewis
Mon, 2014-04-21 06:47
Normal topic Destination of score.fsc file
by anirbanzz » Wed, 2011-04-20 23:30
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1,191 by smlewis
Mon, 2014-04-21 06:47
Normal topic Antibody Modelling
by luicui » Mon, 2017-01-23 21:30
1
281 by smlewis
Mon, 2017-02-06 20:46
Normal topic Comparative modeling
by MRH » Mon, 2013-08-19 23:08
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1,132 by smlewis
Mon, 2014-04-21 06:48
Normal topic Binding energy contribution broken down by residue
by brspurri » Tue, 2013-07-23 12:47
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1,238 by rmoretti
Mon, 2014-04-21 06:48
Normal topic SymDock with constraints
by felipet » Thu, 2015-05-14 09:01
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1,088 by rmoretti
Mon, 2015-05-25 11:49
Normal topic Executing the clean_pdb.py script
by Rkfoury » Fri, 2015-02-20 10:16
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1,095 by lanselibai
Tue, 2015-02-24 02:36
Normal topic Enzyme Design - Score File
by nwhoppe » Thu, 2016-04-07 15:11
1
477 by rmoretti
Fri, 2016-04-08 07:39
Normal topic Flexible peptide docking with flexible receptor backbone
by tevang » Fri, 2012-09-14 11:18
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1,292 by smlewis
Mon, 2014-04-21 06:47
Normal topic No output with docking full protocol
by JulienO » Mon, 2016-05-30 02:16
1
406 by rmoretti
Fri, 2016-06-17 10:24
Normal topic JD2 MPI
by jrcf » Wed, 2015-10-28 14:45
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599 by rmoretti
Sat, 2015-10-31 08:57
Normal topic Protein-DNA Docking using RosettaScripts?
by brspurri » Fri, 2013-06-07 09:06
1
2,006 by rmoretti
Mon, 2014-04-21 06:48
Normal topic ddg_monomer with -ddg::local_opt_only true, will it affect other chains that are close?
by cossio » Fri, 2014-12-26 13:11
1
660 by rmoretti
Tue, 2015-01-13 07:44
Normal topic cluster.linuxgccrelease Killed error
by samuelrpita » Fri, 2015-11-20 05:56
1
630 by rmoretti
Tue, 2015-11-24 16:07
Normal topic Filtering while clustering
by David Hoover » Wed, 2011-03-30 07:03
1
1,141 by smlewis
Mon, 2014-04-21 06:47
Normal topic profit program in antibody design
by tzhou » Tue, 2013-10-15 23:29
1
1,278 by rmoretti
Mon, 2014-04-21 06:48
Normal topic how to generate Fragments using up to 2001 structures only
by oppopomoz » Sat, 2015-07-25 00:43
1
603 by rmoretti
Thu, 2015-08-06 08:57
Normal topic Rosetta_scripts error, Got some signal... It is:6
by jhm13c » Fri, 2017-04-14 14:05
1
134 by rmoretti
Sat, 2017-04-15 13:30
Normal topic Script for loop modeling: how to define loop sequence
by batch2k » Thu, 2014-10-30 12:58
1
663 by jadolfbr
Fri, 2014-10-31 08:45
Normal topic rosetta's keyword list
by fred » Tue, 2014-01-21 06:03
1
1,259 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Error with FlexPepDock
by aloshbau » Sat, 2013-08-10 11:51
1
1,158 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Snugdock+ensembledock usage
by Anouk » Mon, 2014-09-22 08:09
1
1,258 by jadolfbr
Mon, 2014-10-20 13:42
Normal topic Should I trust the score output from relax used with a protein complex?
by cossio » Thu, 2015-05-07 06:08
1
658 by rmoretti
Mon, 2015-05-25 12:37
Normal topic Generating non-redundat dataset for loop models
by dario.corrada » Wed, 2016-03-09 03:00
1
400 by smlewis
Wed, 2016-03-09 04:11
Normal topic Model two domain protein
by sn » Sat, 2017-05-06 13:21
1
135 by rmoretti
Mon, 2017-05-15 08:54
Normal topic heads up for constraints using GAUSSIANFUNC
by attesor » Thu, 2015-10-22 07:30
1
478 by smlewis
Thu, 2015-10-22 08:04
Normal topic Docking prepack vs. relax
by David Weis » Tue, 2017-02-21 05:37
1
205 by smlewis
Tue, 2017-02-21 07:58
Normal topic homology membrane modeling demo in rosetta 3.5
by rlwoltz » Mon, 2013-09-09 10:26
1
1,421 by smlewis
Mon, 2014-04-21 06:48
Normal topic Syntax to extract PDB files from a silent file
by lanselibai » Fri, 2014-09-26 13:48
1
967 by lanselibai
Fri, 2014-09-26 14:58
Normal topic Failed glycine check when running RosettaRemodel to build disulfide
by cheyuk » Fri, 2014-06-27 02:31
1
665 by everyday847
Sun, 2014-09-28 21:16
Normal topic Design a peptide linked to small molecule ligand
by shaunmk » Mon, 2015-03-02 09:05
1
847 by rmoretti
Wed, 2015-03-25 12:39
Normal topic sequence design to enhance Fc / Fc-g Receptor binding
by jarod » Tue, 2017-05-23 09:00
1
135 by jadolfbr
Thu, 2017-06-01 10:00
Normal topic relax job failed
by albumns » Sat, 2014-07-26 00:21
1
675 by rmoretti
Sun, 2014-07-27 10:48
Normal topic cluster error
by sudhar » Fri, 2011-06-17 05:58
1
1,272 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Options for Enzdes RosettaScripts
by joeg » Wed, 2014-03-12 09:28
1
984 by rmoretti
Thu, 2014-03-13 08:04
Normal topic Segmentation fault when running Abinito Relax
by Hongtham » Mon, 2014-12-15 07:16
1
1,093 by rmoretti
Fri, 2015-01-02 11:45
Normal topic Protein/Protein Ddg demo: How to write predicted mutant structures?
by cossio » Wed, 2015-11-04 20:14
1
473 by rmoretti
Tue, 2015-11-10 11:10
Normal topic Full Protocol
by shekhar » Fri, 2013-10-04 01:07
1
1,458 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Docking with loop rebuilding
by kxiao » Sun, 2015-06-28 19:37
1
646 by rmoretti
Fri, 2015-07-03 14:41
Normal topic Ddg_monomer: implementing disulfides
by kabol » Wed, 2016-11-30 02:39
1
286 by rmoretti
Wed, 2016-11-30 07:46

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