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Rosetta 3 - Applications

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Sticky topic Sticky: FAQ
by admin » Mon, 2010-08-30 04:18
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7,265 by admin
Fri, 2015-09-04 16:17
Normal topic Finding lowest energy structure among generated structures
by Marius1987 » Sun, 2016-04-10 11:38
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885 by Marius1987
Sun, 2016-04-10 12:09
Normal topic What means "[ ERROR ] TIME_STAMP: AbrelaxMover: finished ...NO_BATCH S_0001."
by Corvin » Thu, 2020-04-02 00:16
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215 by Corvin
Thu, 2020-04-02 00:16
Normal topic help surface_docking peptide on ice
by engand93 » Wed, 2019-03-27 02:43
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337 by engand93
Wed, 2019-03-27 02:43
Normal topic pmut_scan_parallel
by G Mustafa » Wed, 2018-10-17 05:41
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478 by G Mustafa
Wed, 2018-10-17 05:41
Normal topic ligand_docking: ligand preparation
by Alison_Yajie » Thu, 2020-05-21 09:42
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136 by Alison_Yajie
Thu, 2020-05-21 09:42
Normal topic Problems with mpi version of antibody.linuxgccrelease
by Sunyp_IM » Thu, 2020-05-28 23:06
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191 by Sunyp_IM
Thu, 2020-05-28 23:07
Normal topic Helical Symmetry Axis
by Sandy » Tue, 2016-05-31 18:48
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996 by Sandy
Tue, 2016-05-31 18:48
Normal topic RosettaAntibody3 core.pose.util error
by linhhoang157 » Tue, 2020-07-28 12:40
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116 by linhhoang157
Tue, 2020-07-28 12:40
Normal topic new BUNS for FunFolDes run
by tatsiana.bylund » Wed, 2019-08-14 20:57
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282 by tatsiana.bylund
Wed, 2019-08-14 20:57
Normal topic Docking protein complexes when constrained by oligomer symmetry
by msk » Tue, 2014-06-03 11:09
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902 by msk
Tue, 2014-06-03 11:09
Normal topic Extracting top score PIPER models
by almeida85 » Mon, 2020-08-31 07:17
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109 by almeida85
Mon, 2020-08-31 07:17
Normal topic How to design the anitgen-antibody interface
by Sunyp_IM » Tue, 2017-12-12 18:44
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534 by Sunyp_IM
Tue, 2017-12-12 18:44
Normal topic Symmetry mode in Remodel for N-terminal extension
by yvonne.chan2 » Mon, 2019-11-04 13:41
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382 by yvonne.chan2
Mon, 2019-11-04 13:41
Normal topic zero standard deviation of I_sc in protein-protein docking
by rohi » Fri, 2020-07-03 22:19
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123 by rohi
Fri, 2020-07-03 22:20
Normal topic Side-chain grafting at the fixed protein and position
by Kazu » Wed, 2020-05-20 08:49
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133 by Kazu
Wed, 2020-05-20 08:49
Normal topic Symmetric assembly and output reconstruction
by felipet » Wed, 2014-07-02 10:23
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826 by felipet
Wed, 2014-07-02 10:23
Normal topic Error Implementing Match Style Constraints
by pwging13 » Thu, 2019-12-19 09:53
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283 by pwging13
Thu, 2019-12-19 09:53
Normal topic Can't find RosettaRemodel in Rosetta 3.4
by petrikigor » Mon, 2012-12-03 13:56
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1,221 by petrikigor
Mon, 2014-04-21 06:47
Normal topic cartesian_ddg crashes when the mutfile contains multiple mutations to non-canonical residues
by ValentinaSora » Sun, 2020-05-24 12:32
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202 by ValentinaSora
Sun, 2020-05-24 12:32
Normal topic Weighted scores??
by sizhang » Wed, 2018-12-05 15:22
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390 by sizhang
Wed, 2018-12-05 15:22
Normal topic DNA-protein docking
by ksteczk » Sat, 2020-04-11 11:23
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230 by ksteczk
Sat, 2020-04-11 11:23
Normal topic Pepspec Anchor Dock
by Soler » Wed, 2020-09-16 19:08
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83 by Soler
Wed, 2020-09-16 19:08
Normal topic algebric library for rosetta
by yigallah » Mon, 2014-12-15 08:46
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794 by yigallah
Mon, 2014-12-15 08:46
Normal topic appropriate sampling for protein docking to a multi chain assembly
by SWM » Fri, 2020-01-24 11:22
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197 by SWM
Fri, 2020-01-24 11:22
Normal topic Bug Report - Encoding issue
by daniloboskovic » Tue, 2020-08-04 07:02
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70 by daniloboskovic
Tue, 2020-08-04 07:02
Normal topic PlaceStub filter
by a-eatemadi@razi... » Wed, 2017-11-15 04:19
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653 by a-eatemadi@razi...
Mon, 2017-12-04 23:52
Normal topic Residue selector
by Alison_Yajie » Wed, 2020-06-17 19:57
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144 by Alison_Yajie
Thu, 2020-06-18 09:47
Normal topic NCAA Rotamers for Cyclosporin
by marinok » Mon, 2020-09-28 14:11
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65 by marinok
Mon, 2020-09-28 14:11
Normal topic ddg_monomer: if MPI executable is reproducible and efficient?
by lanselibai » Sun, 2015-01-11 09:48
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996 by lanselibai
Sun, 2015-01-11 10:50
Normal topic Fusing C-terminal or N-terminal segments onto proteins using Remodel
by achambe » Mon, 2016-01-04 11:26
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826 by achambe
Mon, 2016-01-04 11:26
Normal topic RosettaCM
by jlawrie » Fri, 2020-08-14 14:09
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115 by jlawrie
Fri, 2020-08-14 14:09
Normal topic minirosetta: how to reserve (inter-chain) disulfides after relax ?
by lanselibai » Sat, 2015-01-24 10:56
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1,539 by lanselibai
Thu, 2015-01-29 00:50
Normal topic Comparative Modeling Templates for Protein with Multiple Domains
by Morrian_Lynn » Wed, 2020-03-04 10:42
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219 by Morrian_Lynn
Wed, 2020-03-04 10:42
Normal topic RosettaMatch and CST files
by mwfranklin » Mon, 2016-07-25 11:49
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1,247 by mwfranklin
Mon, 2016-07-25 11:49
Normal topic Molecular Replacement with multiple chains
by brspurri » Fri, 2011-06-10 08:25
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1,588 by brspurri
Mon, 2014-04-21 06:47
Normal topic how to run ala_scan.xml
by xinmiaohe » Mon, 2019-08-26 09:38
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290 by xinmiaohe
Mon, 2019-08-26 09:38
Normal topic Multistate design issues with -run:msd_job_dist option and MSDMover
by elaine.thai » Wed, 2020-05-13 18:07
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200 by elaine.thai
Wed, 2020-05-13 18:07
Normal topic Docking of multichain oligomers
by sdh_h » Wed, 2020-03-25 12:43
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266 by sdh_h
Wed, 2020-03-25 12:43
Normal topic Docking the border segments of coiled coils in parallel orientation
by Corvin » Mon, 2019-12-02 02:00
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272 by Corvin
Mon, 2019-12-02 02:00
Normal topic Fixing and Building disulfide bonds in homology modeling
by kamau » Wed, 2014-09-24 11:33
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1,664 by kamau
Wed, 2014-09-24 11:35
Normal topic DNA Interface design
by zadie1118 » Wed, 2011-06-22 07:05
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1,561 by zadie1118
Mon, 2014-04-21 06:47
Normal topic crazy loopmodel: linear output pdbs
by fred » Wed, 2014-12-03 12:27
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806 by fred
Wed, 2014-12-03 12:28
Normal topic remodel: what are the exact meanings of notations for secondary structure?
by lanselibai » Sat, 2015-01-17 04:53
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883 by lanselibai
Sat, 2015-01-17 07:57
Normal topic DDG and interaction score problem
by a-eatemadi@razi... » Mon, 2018-04-09 22:54
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466 by a-eatemadi@razi...
Mon, 2018-04-09 22:54
Normal topic Repeatability of DDG calculation
by jennifer » Wed, 2015-04-08 05:29
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1,041 by jennifer
Wed, 2015-04-08 05:29
Normal topic structure prediction
by MA » Wed, 2018-09-05 00:50
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365 by MA
Wed, 2018-09-05 00:50
Normal topic score is 0 in the output? - RosettaScripts
by chrisHKL » Thu, 2020-03-05 09:33
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192 by chrisHKL
Thu, 2020-03-05 12:58
Normal topic how to generate the whole molecule that contains all the symmetric chains
by Sunyp_IM » Sun, 2017-12-10 19:43
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597 by Sunyp_IM
Sun, 2017-12-10 19:43
Normal topic behind threading protocol
by fred » Tue, 2011-10-25 05:37
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1,601 by fred
Mon, 2014-04-21 06:47
Normal topic ligand_docking: ligand preparation
by Alison_Yajie » Thu, 2020-07-02 07:05
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133 by Alison_Yajie
Thu, 2020-07-02 07:10
Normal topic protein relax
by Alison_Yajie » Tue, 2020-05-19 08:29
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147 by Alison_Yajie
Tue, 2020-05-19 08:29
Normal topic Use membrane or non-membrane weights in RosettaCM for a hexon in virus capsid?
by lanselibai » Sat, 2020-04-11 02:10
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223 by lanselibai
Sat, 2020-04-11 02:10
Normal topic using DARC in rosetta
by syntekabio2019 » Thu, 2019-12-12 01:27
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317 by syntekabio2019
Thu, 2019-12-12 01:27
Normal topic AbinitioRelax detect_disulf_tolerance
by aarono » Tue, 2020-06-02 00:13
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194 by aarono
Tue, 2020-06-02 00:13
Normal topic Limit on backbone movement in relax?
by SWM » Fri, 2020-01-24 07:35
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248 by SWM
Fri, 2020-01-24 07:35
Normal topic Using abinition to predict a new (previously unsolved) structure.
by ac.research » Mon, 2017-01-09 00:59
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712 by ac.research
Mon, 2017-01-09 00:59
Normal topic metalloprotein ab initio with glutamic acid
by inorgchem » Tue, 2020-06-16 20:45
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118 by inorgchem
Tue, 2020-06-16 20:45
Normal topic Reproduce Robetta's ddg values of interface alanine scan using Rosetta?
by cossio » Mon, 2015-01-19 07:14
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2,115 by cossio
Mon, 2015-01-19 07:14
Normal topic DDG_monomer ΔΔG question
by asbelx » Fri, 2018-04-20 03:31
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503 by asbelx
Fri, 2018-04-20 03:33
Normal topic Global Docking with carbohydrates
by ChiauShu » Sat, 2020-08-22 20:16
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110 by ChiauShu
Sat, 2020-08-22 20:16
Normal topic cluster,how to get the statistic data
by MajorID » Wed, 2011-06-08 09:20
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1,366 by MajorID
Mon, 2014-04-21 06:47
Normal topic Flex_ddG crashes when attempting to move 2 chains (e.g. chains_to_move = A,C)
by jcampecino » Wed, 2020-05-13 12:22
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179 by jcampecino
Wed, 2020-05-13 12:22
Normal topic BuildPeptide - Using Phosphorylated and Sulfated Tyrosine
by jlawrie » Thu, 2020-09-03 14:29
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167 by jlawrie
Wed, 2020-09-16 10:05
Normal topic comparative modelling of a complex
by sdh_h » Sun, 2017-12-17 06:07
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483 by sdh_h
Sun, 2017-12-17 06:07
Normal topic Metal Ion in symmetric design
by tschiex » Wed, 2020-07-08 05:28
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144 by tschiex
Wed, 2020-07-08 05:28
Normal topic Can remodel really handle multiple insertions in one simulation?
by lanselibai » Sat, 2019-12-28 12:51
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237 by lanselibai
Sat, 2019-12-28 12:51
Normal topic denovo_density don't output a pdb file
by ylwang » Sun, 2018-11-18 17:51
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373 by ylwang
Sun, 2018-11-18 17:51
Normal topic mp_transform optimize with franklin2019 scoring
by benhardy » Thu, 2020-05-28 08:35
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224 by benhardy
Thu, 2020-05-28 08:45
Normal topic Pepspec Anchor Dock
by Soler » Fri, 2020-09-18 08:09
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115 by Soler
Fri, 2020-09-18 08:09
Normal topic Problem with Scoring function and PlaceStub mover
by a-eatemadi@razi... » Sat, 2018-04-07 09:22
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451 by a-eatemadi@razi...
Sat, 2018-04-07 09:24
Normal topic What is interface_cutoff_distance? And why did my residues outside this value get designed?
by chrisHKL » Fri, 2020-02-28 14:52
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189 by chrisHKL
Fri, 2020-02-28 14:52
Normal topic clustering output file has few structures
by fabiotrovato » Mon, 2020-08-17 11:37
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90 by fabiotrovato
Mon, 2020-08-17 11:37
Normal topic Domain insertion with Non-CAA
by mwfranklin » Mon, 2017-01-16 12:30
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1,021 by mwfranklin
Mon, 2017-01-16 12:30
Normal topic Segment File Gen - no ouput
by CATarr » Wed, 2019-10-09 19:05
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292 by CATarr
Wed, 2019-10-09 19:05
Normal topic Flexpepdock I_hb scoring term
by mbakalar » Fri, 2018-08-31 13:05
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404 by mbakalar
Fri, 2018-08-31 13:06
Normal topic debug rosetta_scripts FunFolDes run
by tatsiana.bylund » Sun, 2019-08-18 23:17
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315 by tatsiana.bylund
Sun, 2019-08-18 23:17
Normal topic General question regarding ligand-docking
by Alison_Yajie » Thu, 2020-05-07 09:48
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165 by Alison_Yajie
Thu, 2020-05-07 09:48
Normal topic Modelling of multi-component symmetrical structures
by LanMei » Wed, 2020-10-07 09:58
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104 by LanMei
Wed, 2020-10-07 09:58
Normal topic wallpaper symmetry definition file
by aaj » Fri, 2016-02-26 08:40
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775 by aaj
Fri, 2016-02-26 08:40
Normal topic Interesting scoring performance in flexpepdock against random peptides
by ziqi1234 » Fri, 2017-12-08 07:52
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496 by ziqi1234
Fri, 2017-12-08 07:52
Normal topic An error with score app
by Genta » Tue, 2019-10-29 18:46
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284 by Genta
Tue, 2019-10-29 18:46
Normal topic fragment_picker bug
by David Hoover » Wed, 2012-02-29 11:43
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1,181 by David Hoover
Mon, 2014-04-21 06:47
Normal topic Rosetta remodel - including an RNA ligand
by daniloboskovic » Fri, 2020-04-10 04:24
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215 by daniloboskovic
Fri, 2020-04-10 04:24
Normal topic Fragment library (vall file) from Robetta?
by alex » Sun, 2017-02-19 08:12
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907 by alex
Sun, 2017-02-19 08:12
Normal topic using piper-flexpepdock
by syntekabio2019 » Thu, 2019-12-12 01:22
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335 by syntekabio2019
Thu, 2019-12-12 01:22
Normal topic manually defining CDRs in antibody modelling
by gard.nelson » Fri, 2020-07-10 13:31
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150 by gard.nelson
Fri, 2020-07-10 13:31
Normal topic FlexPepDocking
by jlawrie » Tue, 2020-09-15 12:52
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81 by jlawrie
Tue, 2020-09-15 12:52
Normal topic csrosetta.org login
by jfeuva » Tue, 2014-12-09 14:49
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23,720 by jfeuva
Tue, 2014-12-09 14:49
Normal topic Zero residues error in docking
by cjy318 » Tue, 2020-07-28 19:47
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94 by cjy318
Tue, 2020-07-28 19:47
Normal topic rosetta remodel and designing helix extension
by dhirajks » Thu, 2018-12-13 19:34
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428 by dhirajks
Thu, 2018-12-13 19:34
Normal topic Secondary Matching build_sets Error
by enmirts » Wed, 2018-03-28 10:33
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437 by enmirts
Wed, 2018-03-28 10:34
Normal topic FloppyTail as a rosettascripts file
by tiagogomes89 » Mon, 2015-01-19 02:45
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844 by tiagogomes89
Mon, 2015-01-19 02:45
Normal topic Fewer than expected structures in clustering output
by fabiotrovato » Thu, 2020-08-20 00:59
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84 by fabiotrovato
Thu, 2020-08-20 00:59
Normal topic Ligand docking with constraint
by Alison_Yajie » Wed, 2020-06-24 12:34
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122 by Alison_Yajie
Wed, 2020-06-24 12:34
Normal topic application for affinity optimization
by wentlewi » Fri, 2020-03-13 03:24
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253 by wentlewi
Fri, 2020-03-13 03:24
Normal topic Rosetta Remodel - Error in core::conformation::Conformation::residue(): The sequence position requested was 0.
by daniloboskovic » Fri, 2019-11-08 08:24
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646 by daniloboskovic
Fri, 2019-11-08 08:27
Normal topic Does antibody_numbering_converter support camelid antibody?
by mxp » Tue, 2020-07-07 01:21
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88 by mxp
Tue, 2020-07-07 01:21
Normal topic The problems on pdb renumbering
by Sunyp_IM » Sun, 2017-08-20 06:39
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1,136 by Sunyp_IM
Sun, 2017-08-20 06:39
Normal topic membrane ab-initio modeling, is the quality comparable to comparative modeling of 20% id template?
by fglaser » Thu, 2011-04-07 07:57
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1,607 by fglaser
Mon, 2014-04-21 06:47

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