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Rosetta 3 - Applications

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Sticky topic Sticky: FAQ
by admin » Mon, 2010-08-30 04:18
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6,647 by admin
Fri, 2015-09-04 16:17
Normal topic Interesting scoring performance in flexpepdock against random peptides
by ziqi1234 » Fri, 2017-12-08 07:52
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190 by ziqi1234
Fri, 2017-12-08 07:52
Normal topic wallpaper symmetry definition file
by aaj » Fri, 2016-02-26 08:40
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489 by aaj
Fri, 2016-02-26 08:40
Normal topic behind threading protocol
by fred » Tue, 2011-10-25 05:37
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1,267 by fred
Mon, 2014-04-21 06:47
Normal topic Fragment library (vall file) from Robetta?
by alex » Sun, 2017-02-19 08:12
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431 by alex
Sun, 2017-02-19 08:12
Normal topic csrosetta.org login
by jfeuva » Tue, 2014-12-09 14:49
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23,422 by jfeuva
Tue, 2014-12-09 14:49
Normal topic Secondary Matching build_sets Error
by enmirts » Wed, 2018-03-28 10:33
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101 by enmirts
Wed, 2018-03-28 10:34
Normal topic FloppyTail as a rosettascripts file
by tiagogomes89 » Mon, 2015-01-19 02:45
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572 by tiagogomes89
Mon, 2015-01-19 02:45
Normal topic cluster,how to get the statistic data
by MajorID » Wed, 2011-06-08 09:20
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1,028 by MajorID
Mon, 2014-04-21 06:47
Normal topic The problems on pdb renumbering
by Sunyp_IM » Sun, 2017-08-20 06:39
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411 by Sunyp_IM
Sun, 2017-08-20 06:39
Normal topic Membrane Abinitio modeling
by bharat_46010 » Mon, 2017-03-13 22:39
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318 by bharat_46010
Mon, 2017-03-13 22:39
Normal topic backrub application, resfile, and pivot_residues
by tylerborrman » Tue, 2016-12-06 14:46
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315 by tylerborrman
Tue, 2016-12-06 14:46
Normal topic Dock two domains using topology broker
by sn » Thu, 2017-10-05 17:07
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208 by sn
Thu, 2017-10-05 17:07
Normal topic FlexPepDock Multi chain receptor
by evo_umich » Mon, 2018-04-02 12:13
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104 by evo_umich
Mon, 2018-04-02 12:13
Normal topic Pepspec options
by shaunmk » Mon, 2015-04-27 02:33
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690 by shaunmk
Mon, 2015-04-27 02:33
Normal topic Finding lowest energy structure among generated structures
by Marius1987 » Sun, 2016-04-10 11:38
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561 by Marius1987
Sun, 2016-04-10 12:09
Normal topic Helical Symmetry Axis
by Sandy » Tue, 2016-05-31 18:48
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564 by Sandy
Tue, 2016-05-31 18:48
Normal topic fragment_picker bug
by David Hoover » Wed, 2012-02-29 11:43
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849 by David Hoover
Mon, 2014-04-21 06:47
Normal topic How to design the anitgen-antibody interface
by Sunyp_IM » Tue, 2017-12-12 18:44
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181 by Sunyp_IM
Tue, 2017-12-12 18:44
Normal topic Docking protein complexes when constrained by oligomer symmetry
by msk » Tue, 2014-06-03 11:09
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615 by msk
Tue, 2014-06-03 11:09
Normal topic Can't find RosettaRemodel in Rosetta 3.4
by petrikigor » Mon, 2012-12-03 13:56
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940 by petrikigor
Mon, 2014-04-21 06:47
Normal topic Symmetric assembly and output reconstruction
by felipet » Wed, 2014-07-02 10:23
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584 by felipet
Wed, 2014-07-02 10:23
Normal topic algebric library for rosetta
by yigallah » Mon, 2014-12-15 08:46
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536 by yigallah
Mon, 2014-12-15 08:46
Normal topic membrane ab-initio modeling, is the quality comparable to comparative modeling of 20% id template?
by fglaser » Thu, 2011-04-07 07:57
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1,234 by fglaser
Mon, 2014-04-21 06:47
Normal topic ddg_monomer: if MPI executable is reproducible and efficient?
by lanselibai » Sun, 2015-01-11 09:48
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581 by lanselibai
Sun, 2015-01-11 10:50
Normal topic Fusing C-terminal or N-terminal segments onto proteins using Remodel
by achambe » Mon, 2016-01-04 11:26
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465 by achambe
Mon, 2016-01-04 11:26
Normal topic PlaceStub filter
by a-eatemadi@razi... » Wed, 2017-11-15 04:19
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229 by a-eatemadi@razi...
Mon, 2017-12-04 23:52
Normal topic Folding and Docking using Symmetry
by danielles » Wed, 2012-09-12 11:32
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979 by danielles
Mon, 2014-04-21 06:47
Normal topic RosettaMatch and CST files
by mwfranklin » Mon, 2016-07-25 11:49
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634 by mwfranklin
Mon, 2016-07-25 11:49
Normal topic minirosetta: how to reserve (inter-chain) disulfides after relax ?
by lanselibai » Sat, 2015-01-24 10:56
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1,010 by lanselibai
Thu, 2015-01-29 00:50
Normal topic Fixing and Building disulfide bonds in homology modeling
by kamau » Wed, 2014-09-24 11:33
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1,152 by kamau
Wed, 2014-09-24 11:35
Normal topic Relax multiple PDB files with MPI, jd2, and a pdblist on TACC Stampede2
by AJVincelli » Sat, 2018-07-14 13:14
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112 by AJVincelli
Sat, 2018-07-14 13:24
Normal topic crazy loopmodel: linear output pdbs
by fred » Wed, 2014-12-03 12:27
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563 by fred
Wed, 2014-12-03 12:28
Normal topic Repeatability of DDG calculation
by jennifer » Wed, 2015-04-08 05:29
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731 by jennifer
Wed, 2015-04-08 05:29
Normal topic remodel: what are the exact meanings of notations for secondary structure?
by lanselibai » Sat, 2015-01-17 04:53
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575 by lanselibai
Sat, 2015-01-17 07:57
Normal topic DDG and interaction score problem
by a-eatemadi@razi... » Mon, 2018-04-09 22:54
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98 by a-eatemadi@razi...
Mon, 2018-04-09 22:54
Normal topic how to generate the whole molecule that contains all the symmetric chains
by Sunyp_IM » Sun, 2017-12-10 19:43
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177 by Sunyp_IM
Sun, 2017-12-10 19:43
Normal topic PEPSPEC
by Neeraj » Wed, 2018-01-03 02:24
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167 by Neeraj
Wed, 2018-01-03 02:24
Normal topic Running Rosetta CM Hybridize step errors with: Scorefunction not set up for nonideal/Cartesian scoring
by brspurri » Wed, 2017-03-29 13:19
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696 by brspurri
Wed, 2017-03-29 13:19
Normal topic Using abinition to predict a new (previously unsolved) structure.
by ac.research » Mon, 2017-01-09 00:59
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361 by ac.research
Mon, 2017-01-09 00:59
Normal topic Reproduce Robetta's ddg values of interface alanine scan using Rosetta?
by cossio » Mon, 2015-01-19 07:14
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1,852 by cossio
Mon, 2015-01-19 07:14
Normal topic DDG_monomer ΔΔG question
by asbelx » Fri, 2018-04-20 03:31
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151 by asbelx
Fri, 2018-04-20 03:33
Normal topic comparative modelling of a complex
by sdh_h » Sun, 2017-12-17 06:07
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164 by sdh_h
Sun, 2017-12-17 06:07
Normal topic Molecular Replacement with multiple chains
by brspurri » Fri, 2011-06-10 08:25
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1,267 by brspurri
Mon, 2014-04-21 06:47
Normal topic DNA Interface design
by zadie1118 » Wed, 2011-06-22 07:05
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1,239 by zadie1118
Mon, 2014-04-21 06:47
Normal topic Relaxing protein-RNA complexes
by rkirchdo » Fri, 2018-08-03 08:50
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30 by rkirchdo
Fri, 2018-08-03 11:01
Normal topic Problem with Scoring function and PlaceStub mover
by a-eatemadi@razi... » Sat, 2018-04-07 09:22
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94 by a-eatemadi@razi...
Sat, 2018-04-07 09:24
Normal topic Domain insertion with Non-CAA
by mwfranklin » Mon, 2017-01-16 12:30
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526 by mwfranklin
Mon, 2017-01-16 12:30
Normal topic Is it possible to restart the ddg_monomer.linuxgccrelease?
by lanselibai » Mon, 2015-09-07 03:46
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726 by rmoretti
Wed, 2015-09-09 12:01
Normal topic Rosetta failed in making score.fsc
by josdee » Sun, 2017-02-05 21:58
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442 by smlewis
Mon, 2017-02-06 06:57
Normal topic Alanine Scanning
by gjbartlett » Mon, 2013-08-05 07:02
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1,887 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Enzyme Design with additional covalent backbone bonds
by mwfranklin » Wed, 2016-08-03 10:23
1
696 by rmoretti
Mon, 2016-09-05 11:29
Normal topic Getting error with Rosetta "antibody.linuxgccrelease" command
by Sunyp_IM » Mon, 2017-08-07 19:40
1
452 by smlewis
Tue, 2017-08-15 23:19
Normal topic ERROR: unrecognized residue name 'GLY_p:RepulsiveOnly'
by smiruthi » Mon, 2011-12-12 14:27
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1,402 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Creating model of 89-90 residues by ab initio methodology-help
by krlitros87 » Sun, 2014-05-25 12:12
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935 by rmoretti
Mon, 2014-05-26 09:29
Normal topic Enzyme design output silent file and score file
by deltag » Fri, 2012-09-28 13:07
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1,126 by rmoretti
Mon, 2014-04-21 06:47
Normal topic number of structures in homology modeling for cluster analysis
by pdbb » Fri, 2013-04-12 08:52
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1,340 by smlewis
Mon, 2014-04-21 06:47
Normal topic ddg_monomer "ERROR: seqpos >= 1"
by cossio » Fri, 2015-10-02 12:20
1
832 by rmoretti
Fri, 2015-10-02 12:30
Normal topic Flexible docking using rosetta density-fitting for DNA
by helm » Thu, 2012-06-14 23:43
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1,360 by smlewis
Mon, 2014-04-21 06:47
Normal topic Files for Spatial Constraints
by Derek » Tue, 2016-04-12 01:00
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593 by Derek
Wed, 2016-04-27 01:31
Normal topic Partial Active Site Design for a Novel Substrate
by Derek » Wed, 2017-05-17 19:41
1
381 by rmoretti
Thu, 2017-05-18 13:51
Normal topic Calbur vs Energy Based Clustering
by Swillard » Sun, 2018-07-01 13:24
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60 by rmoretti
Fri, 2018-08-03 08:26
Normal topic docking with constraints
by talavera » Tue, 2013-05-07 01:50
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2,267 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Extract PDB structures from database
by cossio » Mon, 2018-01-29 09:30
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252 by rmoretti
Tue, 2018-01-30 07:35
Normal topic FloppyTail options error
by DmitriiN » Fri, 2016-11-11 02:54
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570 by smlewis
Fri, 2016-11-11 08:33
Normal topic problem when exact pdb from silent file
by wenchangyu2008 » Mon, 2011-04-18 00:42
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1,660 by wenchangyu2008
Mon, 2014-04-21 06:47
Normal topic Relax with RDC data gives segmentation fault
by sn » Mon, 2018-07-23 11:39
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55 by rmoretti
Fri, 2018-08-03 07:54
Normal topic Binding energy contribution broken down by residue
by brspurri » Tue, 2013-07-23 12:47
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1,398 by rmoretti
Mon, 2014-04-21 06:48
Normal topic score_jd2 errors out with: ERROR: [ERROR] Error opening RBSeg file 'batch_000065_000059'
by sn » Fri, 2017-03-24 12:26
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377 by rmoretti
Fri, 2017-03-24 13:39
Normal topic ArchiveManager -- spinning down
by Marius1987 » Fri, 2016-12-23 03:10
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535 by smlewis
Fri, 2016-12-23 07:04
Normal topic Abinitio error: std::out_of_range: basic_string
by Harley Worthy » Tue, 2017-10-31 15:20
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350 by Harley Worthy
Thu, 2017-11-02 08:53
Normal topic RosettaRemodel: ERROR: 'Replacing' an atom which doesn't currently exist.
by kamau » Fri, 2017-12-01 08:42
1
235 by kamau
Wed, 2017-12-13 14:31
Normal topic Adding 'virtual' residues for N- and C-terminal optimisation
by Derek Smith » Thu, 2014-08-14 23:18
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930 by jadolfbr
Fri, 2014-10-31 09:00
Normal topic Protein-DNA Docking using RosettaScripts?
by brspurri » Fri, 2013-06-07 09:06
1
2,346 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Ab-initio modeling on part of the protein
by xiayanlawrence » Thu, 2013-12-19 07:45
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1,991 by rmoretti
Mon, 2014-04-21 06:48
Normal topic latest version of rosetta unable to build models
by pramod » Mon, 2014-11-03 11:31
1
1,048 by rmoretti
Tue, 2014-11-04 10:33
Normal topic Standalone alanine scanning protocol
by exchhattu » Thu, 2011-10-13 19:40
1
3,042 by smlewis
Mon, 2014-04-21 06:47
Normal topic Holes output interpretation
by lah435 » Mon, 2012-06-04 15:02
1
1,139 by smlewis
Mon, 2014-04-21 06:47
Normal topic Loopmodel with DNA has no energy score
by Nicky_Learning_... » Sun, 2015-05-10 19:31
1
894 by rmoretti
Mon, 2015-05-25 12:30
Normal topic FloppyTail vs. Remodel for linkers
by attesor » Mon, 2014-07-07 08:36
1
954 by smlewis
Mon, 2014-07-07 11:58
Normal topic Error in Loop modeling and other queries
by ashu4487 » Wed, 2016-05-11 18:23
1
864 by rmoretti
Fri, 2016-06-17 10:15
Normal topic Instructing design scripts to use noncanonical AA instead of canonical
by zcrook » Tue, 2014-11-25 10:43
1
714 by rmoretti
Wed, 2014-11-26 07:51
Normal topic Modeling the structure of camel single domain antibody
by Sunyp_IM » Mon, 2018-01-08 00:34
1
222 by Sunyp_IM
Mon, 2018-01-08 00:55
Normal topic relax VS. backrub
by jiongzhang » Mon, 2012-07-02 14:52
1
1,125 by smlewis
Mon, 2014-04-21 06:47
Normal topic Loop modeling: KIC with fragments producing unusual models
by kamau » Mon, 2015-06-01 12:06
1
847 by rmoretti
Sat, 2015-06-20 20:07
Normal topic RosettaMatch outputs
by mwfranklin » Tue, 2016-10-11 11:46
1
656 by rmoretti
Fri, 2016-10-14 08:56
Normal topic placing a constraint during structure prediction
by cbala » Thu, 2011-04-07 08:54
1
1,760 by ic3reyes
Mon, 2014-04-21 06:47
Normal topic Surface accessible residue as a constraint.
by arthuc01 » Fri, 2012-03-09 23:27
1
986 by smlewis
Mon, 2014-04-21 06:47
Normal topic Docking on mpi.
by Pernille » Mon, 2014-07-28 08:40
1
1,463 by rmoretti
Mon, 2014-08-04 14:51
Normal topic score application
by Hongtham » Tue, 2014-12-23 06:38
1
747 by rmoretti
Fri, 2015-01-02 11:06
Normal topic molfile_to_params script error
by pablogalazdavison » Tue, 2015-07-07 21:22
1
922 by rmoretti
Tue, 2015-07-14 14:59
Normal topic Destination of score.fsc file
by anirbanzz » Wed, 2011-04-20 23:30
1
1,405 by smlewis
Mon, 2014-04-21 06:47
Normal topic Ligand Docking with ARLS
by cam11 » Thu, 2016-06-23 09:34
1
679 by rmoretti
Thu, 2016-06-23 10:55
Normal topic Error Interface analyser
by jrcf » Thu, 2017-06-22 12:55
1
420 by smlewis
Thu, 2017-06-22 13:31
Normal topic ROSETTALIGAND: How to prepare data to plot ROC curves using rosettaligand docking result???
by Ryhon Wang » Mon, 2016-01-04 22:36
1
1,158 by rmoretti
Tue, 2016-01-05 08:35
Normal topic FlexPepDock in RosettaScripts keeps running
by gw » Tue, 2012-08-21 12:31
1
1,280 by smlewis
Mon, 2014-04-21 06:47
Normal topic Symmetric docking with multiple chains as asymmetric unit
by sarah29 » Tue, 2013-11-05 20:24
1
1,726 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Flexible peptide docking with flexible receptor backbone
by tevang » Fri, 2012-09-14 11:18
1
1,484 by smlewis
Mon, 2014-04-21 06:47
Normal topic Antibody Docking application
by Maryam_tabasinezhad » Sat, 2015-09-05 09:58
1
921 by jadolfbr
Wed, 2015-09-09 12:35
Normal topic error--rosetta fragment‐based refinement protocol for refinement against EM density
by gsuchunli » Mon, 2016-07-25 13:35
1
858 by gsuchunli
Mon, 2016-07-25 13:56

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