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Rosetta 3 - Applications

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Sticky topic Sticky: FAQ
by admin » Mon, 2010-08-30 04:18
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6,514 by admin
Fri, 2015-09-04 16:17
Normal topic Folding and Docking using Symmetry
by danielles » Wed, 2012-09-12 11:32
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890 by danielles
Mon, 2014-04-21 06:47
Normal topic PEPSPEC
by Neeraj » Wed, 2018-01-03 02:24
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59 by Neeraj
Wed, 2018-01-03 02:24
Normal topic Using abinition to predict a new (previously unsolved) structure.
by ac.research » Mon, 2017-01-09 00:59
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288 by ac.research
Mon, 2017-01-09 00:59
Normal topic Running Rosetta CM Hybridize step errors with: Scorefunction not set up for nonideal/Cartesian scoring
by brspurri » Wed, 2017-03-29 13:19
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418 by brspurri
Wed, 2017-03-29 13:19
Normal topic Reproduce Robetta's ddg values of interface alanine scan using Rosetta?
by cossio » Mon, 2015-01-19 07:14
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1,813 by cossio
Mon, 2015-01-19 07:14
Normal topic comparative modelling of a complex
by sdh_h » Sun, 2017-12-17 06:07
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69 by sdh_h
Sun, 2017-12-17 06:07
Normal topic cm_scripts
by sn » Wed, 2018-02-14 11:00
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31 by sn
Wed, 2018-02-14 11:00
Normal topic Domain insertion with Non-CAA
by mwfranklin » Mon, 2017-01-16 12:30
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392 by mwfranklin
Mon, 2017-01-16 12:30
Normal topic wallpaper symmetry definition file
by aaj » Fri, 2016-02-26 08:40
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427 by aaj
Fri, 2016-02-26 08:40
Normal topic Interesting scoring performance in flexpepdock against random peptides
by ziqi1234 » Fri, 2017-12-08 07:52
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87 by ziqi1234
Fri, 2017-12-08 07:52
Normal topic Fragment library (vall file) from Robetta?
by alex » Sun, 2017-02-19 08:12
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313 by alex
Sun, 2017-02-19 08:12
Normal topic csrosetta.org login
by jfeuva » Tue, 2014-12-09 14:49
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23,373 by jfeuva
Tue, 2014-12-09 14:49
Normal topic Molecular Replacement with multiple chains
by brspurri » Fri, 2011-06-10 08:25
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1,188 by brspurri
Mon, 2014-04-21 06:47
Normal topic DNA Interface design
by zadie1118 » Wed, 2011-06-22 07:05
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1,135 by zadie1118
Mon, 2014-04-21 06:47
Normal topic FloppyTail as a rosettascripts file
by tiagogomes89 » Mon, 2015-01-19 02:45
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530 by tiagogomes89
Mon, 2015-01-19 02:45
Normal topic The problems on pdb renumbering
by Sunyp_IM » Sun, 2017-08-20 06:39
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197 by Sunyp_IM
Sun, 2017-08-20 06:39
Normal topic behind threading protocol
by fred » Tue, 2011-10-25 05:37
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1,187 by fred
Mon, 2014-04-21 06:47
Normal topic Membrane Abinitio modeling
by bharat_46010 » Mon, 2017-03-13 22:39
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223 by bharat_46010
Mon, 2017-03-13 22:39
Normal topic DDG_monomer application
by shadrinams » Mon, 2018-02-12 12:14
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25 by shadrinams
Mon, 2018-02-12 12:14
Normal topic backrub application, resfile, and pivot_residues
by tylerborrman » Tue, 2016-12-06 14:46
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257 by tylerborrman
Tue, 2016-12-06 14:46
Normal topic Dock two domains using topology broker
by sn » Thu, 2017-10-05 17:07
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125 by sn
Thu, 2017-10-05 17:07
Normal topic Pepspec options
by shaunmk » Mon, 2015-04-27 02:33
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635 by shaunmk
Mon, 2015-04-27 02:33
Normal topic Finding lowest energy structure among generated structures
by Marius1987 » Sun, 2016-04-10 11:38
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468 by Marius1987
Sun, 2016-04-10 12:09
Normal topic Helical Symmetry Axis
by Sandy » Tue, 2016-05-31 18:48
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476 by Sandy
Tue, 2016-05-31 18:48
Normal topic cluster,how to get the statistic data
by MajorID » Wed, 2011-06-08 09:20
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963 by MajorID
Mon, 2014-04-21 06:47
Normal topic Docking protein complexes when constrained by oligomer symmetry
by msk » Tue, 2014-06-03 11:09
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570 by msk
Tue, 2014-06-03 11:09
Normal topic How to design the anitgen-antibody interface
by Sunyp_IM » Tue, 2017-12-12 18:44
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77 by Sunyp_IM
Tue, 2017-12-12 18:44
Normal topic Symmetric assembly and output reconstruction
by felipet » Wed, 2014-07-02 10:23
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540 by felipet
Wed, 2014-07-02 10:23
Normal topic Can't find RosettaRemodel in Rosetta 3.4
by petrikigor » Mon, 2012-12-03 13:56
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869 by petrikigor
Mon, 2014-04-21 06:47
Normal topic algebric library for rosetta
by yigallah » Mon, 2014-12-15 08:46
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489 by yigallah
Mon, 2014-12-15 08:46
Normal topic PlaceStub filter
by a-eatemadi@razi... » Wed, 2017-11-15 04:19
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111 by a-eatemadi@razi...
Mon, 2017-12-04 23:52
Normal topic fragment_picker bug
by David Hoover » Wed, 2012-02-29 11:43
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790 by David Hoover
Mon, 2014-04-21 06:47
Normal topic ddg_monomer: if MPI executable is reproducible and efficient?
by lanselibai » Sun, 2015-01-11 09:48
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526 by lanselibai
Sun, 2015-01-11 10:50
Normal topic Fusing C-terminal or N-terminal segments onto proteins using Remodel
by achambe » Mon, 2016-01-04 11:26
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410 by achambe
Mon, 2016-01-04 11:26
Normal topic RosettaMatch and CST files
by mwfranklin » Mon, 2016-07-25 11:49
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496 by mwfranklin
Mon, 2016-07-25 11:49
Normal topic minirosetta: how to reserve (inter-chain) disulfides after relax ?
by lanselibai » Sat, 2015-01-24 10:56
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917 by lanselibai
Thu, 2015-01-29 00:50
Normal topic Fixing and Building disulfide bonds in homology modeling
by kamau » Wed, 2014-09-24 11:33
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1,038 by kamau
Wed, 2014-09-24 11:35
Normal topic crazy loopmodel: linear output pdbs
by fred » Wed, 2014-12-03 12:27
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525 by fred
Wed, 2014-12-03 12:28
Normal topic membrane ab-initio modeling, is the quality comparable to comparative modeling of 20% id template?
by fglaser » Thu, 2011-04-07 07:57
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1,157 by fglaser
Mon, 2014-04-21 06:47
Normal topic Repeatability of DDG calculation
by jennifer » Wed, 2015-04-08 05:29
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676 by jennifer
Wed, 2015-04-08 05:29
Normal topic remodel: what are the exact meanings of notations for secondary structure?
by lanselibai » Sat, 2015-01-17 04:53
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533 by lanselibai
Sat, 2015-01-17 07:57
Normal topic how to generate the whole molecule that contains all the symmetric chains
by Sunyp_IM » Sun, 2017-12-10 19:43
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70 by Sunyp_IM
Sun, 2017-12-10 19:43
Normal topic membrane modeling error
by benniu2004 » Mon, 2013-07-01 17:59
1
1,206 by smlewis
Mon, 2014-04-21 06:48
Normal topic Failed glycine check when running RosettaRemodel to build disulfide
by cheyuk » Fri, 2014-06-27 02:31
1
750 by everyday847
Sun, 2014-09-28 21:16
Normal topic Design a peptide linked to small molecule ligand
by shaunmk » Mon, 2015-03-02 09:05
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989 by rmoretti
Wed, 2015-03-25 12:39
Normal topic sequence design to enhance Fc / Fc-g Receptor binding
by jarod » Tue, 2017-05-23 09:00
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255 by jadolfbr
Thu, 2017-06-01 10:00
Normal topic AbinitioRelax Disulfide Bonds are not being retained
by brspurri » Wed, 2011-09-28 13:55
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2,159 by parmef
Mon, 2014-04-21 06:47
Normal topic contents of span file
by tevang » Mon, 2013-04-15 05:01
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1,184 by smlewis
Mon, 2014-04-21 06:47
Normal topic heads up for constraints using GAUSSIANFUNC
by attesor » Thu, 2015-10-22 07:30
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565 by smlewis
Thu, 2015-10-22 08:04
Normal topic Docking prepack vs. relax
by David Weis » Tue, 2017-02-21 05:37
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323 by smlewis
Tue, 2017-02-21 07:58
Normal topic homology membrane modeling demo in rosetta 3.5
by rlwoltz » Mon, 2013-09-09 10:26
1
1,519 by smlewis
Mon, 2014-04-21 06:48
Normal topic Syntax to extract PDB files from a silent file
by lanselibai » Fri, 2014-09-26 13:48
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1,160 by lanselibai
Fri, 2014-09-26 14:58
Normal topic Unsatisfied interface H-bond in Ligand docking
by Prasanth Kumar » Thu, 2013-07-18 12:04
1
2,282 by rmoretti
Mon, 2014-04-21 06:48
Normal topic relax job failed
by albumns » Sat, 2014-07-26 00:21
1
758 by rmoretti
Sun, 2014-07-27 10:48
Normal topic Options for Enzdes RosettaScripts
by joeg » Wed, 2014-03-12 09:28
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1,090 by rmoretti
Thu, 2014-03-13 08:04
Normal topic Segmentation fault when running Abinito Relax
by Hongtham » Mon, 2014-12-15 07:16
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1,219 by rmoretti
Fri, 2015-01-02 11:45
Normal topic Protein/Protein Ddg demo: How to write predicted mutant structures?
by cossio » Wed, 2015-11-04 20:14
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571 by rmoretti
Tue, 2015-11-10 11:10
Normal topic running structure prediction with robetta server like automation
by dhirajks » Mon, 2018-01-29 21:32
1
55 by rmoretti
Tue, 2018-01-30 07:51
Normal topic Full Protocol
by shekhar » Fri, 2013-10-04 01:07
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1,568 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Docking with loop rebuilding
by kxiao » Sun, 2015-06-28 19:37
1
764 by rmoretti
Fri, 2015-07-03 14:41
Normal topic Ddg_monomer: implementing disulfides
by kabol » Wed, 2016-11-30 02:39
1
462 by rmoretti
Wed, 2016-11-30 07:46
Normal topic restrain residues in docking
by albumns » Sat, 2013-11-02 08:52
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1,313 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic autoNOE peak lists
by aep » Thu, 2015-08-06 06:15
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725 by sgourn
Tue, 2015-08-18 18:25
Normal topic UnfoldedStateEnergyCalculator MPI Error
by colin.walsh.brown » Mon, 2017-11-13 09:43
1
89 by smlewis
Mon, 2017-11-13 10:43
Normal topic error mesages from RosettaDock
by AlanZhao » Mon, 2011-03-21 11:42
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1,129 by smlewis
Mon, 2014-04-21 06:47
Normal topic how to run my openmp programe in rosetta3.3?
by lihowe » Mon, 2012-02-27 23:43
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1,056 by smlewis
Mon, 2014-04-21 06:47
Normal topic Problem with AtomPair constraint
by jarek » Tue, 2012-10-09 07:28
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1,028 by smlewis
Mon, 2014-04-21 06:47
Normal topic CartesianRefiner compilation problem
by DmitriiN » Tue, 2015-12-15 08:52
1
600 by rmoretti
Tue, 2015-12-15 09:48
Normal topic protein-protein docking with flexible backbone
by tim » Fri, 2013-12-20 05:52
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2,596 by rmoretti
Mon, 2014-04-21 06:48
Normal topic "Segmentation fault" for "minirosetta.linuxgccrelease"
by lanselibai » Tue, 2014-11-04 03:17
1
1,038 by rmoretti
Tue, 2014-11-04 08:53
Normal topic ERROR: Rosetta does not recognize the property: SIDECHAIN_THIOL, when running minimize_with_cst.linuxgccrelease
by cossio » Thu, 2015-09-03 08:46
1
919 by rmoretti
Fri, 2015-09-04 10:25
Normal topic output file in ddg calcualtion
by malkeet.singh » Sun, 2017-12-03 07:59
1
82 by malkeet.singh
Wed, 2017-12-06 02:02
Normal topic Problem in using "loopmodel" application to add missing residues
by sushreet » Wed, 2014-08-27 12:43
1
758 by rmoretti
Thu, 2014-08-28 09:42
Normal topic error--rosetta fragment‐based refinement protocol for refinement against EM density
by gsuchunli » Wed, 2016-07-06 10:35
1
579 by rmoretti
Tue, 2016-07-12 08:56
Normal topic Representing Cross-linked nitrogens
by jjlee2 » Sat, 2011-11-26 18:42
1
1,028 by smlewis
Mon, 2014-04-21 06:47
Normal topic Ligand docking: ERROR: set_atom_base: atoms must be bonded!
by mengzhang » Mon, 2014-05-12 12:36
1
1,595 by jharamesh
Mon, 2014-11-03 12:50
Normal topic Fast relax not working
by eyong123 » Fri, 2017-04-21 06:06
1
254 by rmoretti
Fri, 2017-04-21 07:41
Normal topic score_jd2.linuxgccrelease documentation
by fglaser » Mon, 2011-08-01 04:08
1
1,955 by smlewis
Mon, 2014-04-21 06:47
Normal topic Symmetry-aware Backrub?
by gamacy » Fri, 2014-11-14 02:18
1
726 by rmoretti
Tue, 2014-11-18 09:10
Normal topic Protein Design
by ac.research » Wed, 2017-02-15 19:25
1
423 by cdbahl
Sat, 2017-02-18 13:02
Normal topic Rosetta DNA - Protein-DNA scoring function and binding energy
by tanoramb » Tue, 2012-05-08 14:00
1
2,496 by smlewis
Mon, 2014-04-21 06:47
Normal topic loop modeling scoring
by Nicky_Learning_... » Wed, 2015-05-13 20:00
1
945 by rmoretti
Mon, 2015-05-25 11:30
Normal topic Checkpoint with rosetta3.4
by AmelieH » Mon, 2014-12-01 15:51
1
807 by rmoretti
Wed, 2014-12-03 19:07
Normal topic how to pick fragments for a transmembrane protein
by tevang » Mon, 2012-05-28 06:52
1
906 by tevang
Mon, 2014-04-21 06:47
Normal topic Resfile as a input for InterfaceAnalyzer
by palak8669 » Sun, 2015-06-07 21:46
1
670 by smlewis
Mon, 2015-06-08 06:35
Normal topic Problem in redesign binding site
by armart999 » Fri, 2016-10-14 01:55
1
557 by rmoretti
Fri, 2016-10-14 08:42
Normal topic Difference between relax and mimimize_with_cst
by basvandenberg » Thu, 2012-02-09 00:16
1
1,112 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Ligand docking cannot open the protein file
by swarekwood » Tue, 2017-10-17 08:17
1
97 by rmoretti
Tue, 2017-10-17 09:03
Normal topic ligand conformer generation for enzyme design
by bo » Mon, 2013-02-11 16:51
1
1,088 by smlewis
Mon, 2014-04-21 06:47
Normal topic Make Fragments
by Run » Mon, 2013-11-11 05:31
1
1,302 by smlewis
Mon, 2014-04-21 06:48
Normal topic rosetta scores for mutated structures
by harshkhare » Wed, 2011-11-23 09:30
1
1,243 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Connecting linkers
by Prasanth Kumar » Tue, 2014-05-06 00:53
1
1,361 by smlewis
Mon, 2014-05-12 08:32
Normal topic Symmetry definition for apolar helix
by vanrooyenjason » Tue, 2016-01-05 05:20
1
1,394 by rmoretti
Fri, 2016-04-29 09:21
Normal topic Docking structures with ligands in cryo-EM maps
by galushin » Wed, 2012-07-11 12:40
1
2,379 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic Creating model of 89-90 residues by ab initio methodology-help
by krlitros87 » Sun, 2014-05-25 12:12
1
859 by rmoretti
Mon, 2014-05-26 09:29
Normal topic Is it possible to restart the ddg_monomer.linuxgccrelease?
by lanselibai » Mon, 2015-09-07 03:46
1
653 by rmoretti
Wed, 2015-09-09 12:01
Normal topic Rosetta failed in making score.fsc
by josdee » Sun, 2017-02-05 21:58
1
342 by smlewis
Mon, 2017-02-06 06:57
Normal topic protein-protein docking
by cbala » Mon, 2011-04-18 09:15
1
1,186 by smlewis
Mon, 2014-04-21 06:47
Normal topic Alanine Scanning
by gjbartlett » Mon, 2013-08-05 07:02
1
1,742 by rmoretti
Mon, 2014-04-21 06:48

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