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Rosetta 3 - General
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Topic / Topic starter | Replies | Views | Last post | |
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what is "-relax:sequence" ? by Anonymous » Fri, 2012-06-08 06:31 |
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9,241 |
by smlewis Mon, 2014-04-21 06:47 |
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Comparative modelling of dimer by rt1108 » Fri, 2012-06-15 07:31 |
1 |
2,784 |
by smlewis Mon, 2014-04-21 06:47 |
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Don't want to output the design structure by Lindsay » Wed, 2012-05-02 08:02 |
6 |
5,742 |
by Anonymous Mon, 2014-04-21 06:47 |
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Question regarding Mlipo score by DanielK » Tue, 2012-05-29 02:04 |
4 |
4,862 |
by smlewis Mon, 2014-04-21 06:47 |
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Biopython error in mac os x by vinodh » Tue, 2012-06-12 12:23 |
3 |
4,313 |
by jadolfbr Mon, 2014-04-21 06:47 |
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tyrosine structure error by dave » Mon, 2012-04-30 04:38 |
1 |
2,198 |
by frichter Mon, 2014-04-21 06:47 |
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Rosetta reference energy by Lindsay » Mon, 2012-05-07 07:56 |
9 |
9,521 |
by Lindsay Mon, 2014-04-21 06:47 |
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two questions about "Prepare structures for use in Rosetta" by Anonymous » Wed, 2012-06-06 08:13 |
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6,061 |
by Anonymous Mon, 2014-04-21 06:47 |
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decoy vs pose by Anonymous » Fri, 2012-06-15 02:46 |
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2,752 |
by smlewis Mon, 2014-04-21 06:47 |
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total energy score of the pdb structure by Lindsay » Tue, 2012-05-01 12:14 |
4 |
6,427 |
by Lindsay Mon, 2014-04-21 06:47 |
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Speeding up docking to a large complex by skovacs » Thu, 2012-05-10 20:50 |
30 |
28,062 |
by smlewis Mon, 2014-04-21 06:47 |
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about Residue Number in Rosetta by jiongzhang » Mon, 2012-06-11 14:58 |
7 |
10,536 |
by smlewis Mon, 2014-04-21 06:47 |
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symmetric docking application rosetta3.2: the docking_local_refine flag by doranhen » Sun, 2012-05-06 02:20 |
2 |
3,203 |
by doranhen Mon, 2014-04-21 06:47 |
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Questions about Monte Carlo Simulated Annealing algorithm in the design protocols by mdyini » Thu, 2012-05-31 12:39 |
3 |
5,643 |
by smlewis Mon, 2014-04-21 06:47 |
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Warning when running cluster program by Anonymous » Fri, 2012-06-15 02:39 |
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11,701 |
by Anonymous Mon, 2014-04-21 06:47 |
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Fixed bb design with hydrogen bond constraint by bharat_46010 » Mon, 2012-04-30 22:56 |
6 |
6,002 |
by smlewis Mon, 2014-04-21 06:47 |
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Energy and RG in the new rosetta3.4 ( like RG_Energy.cc and RG_Energy_Fast.cc ) by sdg_lab » Thu, 2012-04-12 08:49 |
1 |
2,073 |
by smlewis Mon, 2014-04-21 06:47 |
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what's the difference between recovery and sequence identity by Lindsay » Thu, 2012-04-26 05:46 |
3 |
4,956 |
by smlewis Mon, 2014-04-21 06:47 |
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Problem with clustering 1000 centroid pdbs by doranhen » Sat, 2012-04-28 10:34 |
6 |
6,632 |
by doranhen Mon, 2014-04-21 06:47 |
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what is minirosetta by Lindsay » Tue, 2012-04-10 07:48 |
2 |
9,853 |
by Lindsay Mon, 2014-04-21 06:47 |
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Cluster gdtmm vs. rmsd by brspurri » Thu, 2012-04-19 08:19 |
2 |
3,961 |
by rmoretti Mon, 2014-04-21 06:47 |
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possible error in make_fragments.pl and fix by DanielK » Fri, 2012-04-27 02:21 |
0 |
1,463 |
by DanielK Mon, 2014-04-21 06:47 |
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what option should I use if I want to use the dfire in 3.4 by Lindsay » Thu, 2012-04-12 05:19 |
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3,732 |
by smlewis Mon, 2014-04-21 06:47 |
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Simple FoldTree Question by gipsonb » Wed, 2012-04-25 18:19 |
3 |
3,813 |
by gipsonb Mon, 2014-04-21 06:47 |
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double mutations scan by Lindsay » Fri, 2012-04-27 12:51 |
2 |
3,024 |
by Lindsay Mon, 2014-04-21 06:47 |
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how to optimize the weights? by Lindsay » Tue, 2012-04-10 07:40 |
7 |
6,365 |
by rmoretti Mon, 2014-04-21 06:47 |
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Possible documentation error by imurch » Tue, 2012-04-17 00:11 |
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2,435 |
by Anonymous Mon, 2014-04-21 06:47 |
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possible error in make_fragments.pl and fix by DanielK » Fri, 2012-04-27 02:21 |
0 |
1,623 |
by DanielK Mon, 2014-04-21 06:47 |
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Energy Calculation in Rosetta3.4 by sdg_lab » Thu, 2012-04-12 04:49 |
6 |
11,512 |
by rmoretti Mon, 2014-04-21 06:47 |
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Is there any significant improvement of model generation in rosetta3.4 comparing to rosetta3.3? by jiongzhang » Fri, 2012-04-20 13:35 |
2 |
2,925 |
by rmoretti Mon, 2014-04-21 06:47 |
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possible error in make_fragments.pl and fix by DanielK » Fri, 2012-04-27 02:23 |
2 |
2,982 |
by DanielK Mon, 2014-04-21 06:47 |
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how to make benchmark? by albumns » Wed, 2012-04-04 05:23 |
23 |
29,974 |
by rmoretti Mon, 2014-04-21 06:47 |
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Symmetric Docking (Making Trimer from Monomerics Units) by sdg_lab » Thu, 2012-04-12 09:21 |
1 |
2,252 |
by rmoretti Mon, 2014-04-21 06:47 |
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Picking the correct model from a large set of decoys (30,000+) by brspurri » Thu, 2012-04-26 15:37 |
4 |
5,656 |
by rmoretti Mon, 2014-04-21 06:47 |
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The -symmetry:perturb_rigid_body_dofs flag by doranhen » Sat, 2012-04-28 13:01 |
2 |
2,843 |
by doranhen Mon, 2014-04-21 06:47 |
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symmetric Docking- TRIMER in Rosetta 3.4 ? by sdg_lab » Thu, 2012-04-12 04:22 |
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3,579 |
by rmoretti Mon, 2014-04-21 06:47 |
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Cluster gdtmm vs. rmsd by brspurri » Thu, 2012-04-19 08:20 |
1 |
3,562 |
by rmoretti Mon, 2014-04-21 06:47 |
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possible error in make_fragments.pl and fix by DanielK » Fri, 2012-04-27 02:23 |
0 |
1,721 |
by DanielK Mon, 2014-04-21 06:47 |
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General Protein Folding Question by twopint23oz » Sun, 2012-04-01 22:57 |
7 |
6,519 |
by smlewis Mon, 2014-04-21 06:47 |
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is it possible to generate models without hydrogen? by albumns » Fri, 2012-03-02 12:24 |
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8,350 |
by albumns Mon, 2014-04-21 06:47 |
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Does comparative modeling works for membrane proteins by justin » Wed, 2012-03-21 04:58 |
1 |
2,244 |
by smlewis Mon, 2014-04-21 06:47 |
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How to run docking in rosetta with small molecule by ajaniharesh » Tue, 2012-02-28 03:58 |
1 |
3,957 |
by smlewis Mon, 2014-04-21 06:47 |
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About RosettaScript examples by jiongzhang » Thu, 2012-03-08 10:50 |
1 |
2,432 |
by smlewis Mon, 2014-04-21 06:47 |
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how to use AbinitioRelax.mpi.linuxgccrelease? by albumns » Mon, 2012-03-26 22:50 |
5 |
6,706 |
by smlewis Mon, 2014-04-21 06:47 |
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python problem? by albumns » Fri, 2012-03-02 11:03 |
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2,196 |
by albumns Mon, 2014-04-21 06:47 |
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Documentation missing in MultiGraft by aroop » Thu, 2012-03-15 07:39 |
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3,019 |
by aroop Mon, 2014-04-21 06:47 |
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redesign a enzyme by fixing the active site by Lindsay » Wed, 2012-03-07 08:23 |
2 |
3,073 |
by Lindsay Mon, 2014-04-21 06:47 |
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Membrane folding - blastpgp error. by arthuc01 » Sun, 2012-03-25 14:47 |
4 |
5,805 |
by arthuc01 Mon, 2014-04-21 06:47 |
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a question about loop refinement by albumns » Fri, 2012-03-02 09:38 |
4 |
5,550 |
by albumns Mon, 2014-04-21 06:47 |
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AnchoredPDBcreator by spraha » Wed, 2012-03-14 23:34 |
3 |
3,586 |
by smlewis Mon, 2014-04-21 06:47 |
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Fix back bone design fixbb by Lindsay » Tue, 2012-03-06 12:30 |
26 |
22,851 |
by Anonymous Mon, 2014-04-21 06:47 |
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fixbb design use by Lindsay » Fri, 2012-03-23 09:05 |
2 |
2,891 |
by Lindsay Mon, 2014-04-21 06:47 |
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How to make Rosetta's sampling more aggresive ? by jiongzhang » Mon, 2012-03-12 11:04 |
1 |
2,259 |
by rmoretti Mon, 2014-04-21 06:47 |
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NC atom type [Solved] by franfdez » Tue, 2012-02-07 16:05 |
3 |
3,986 |
by franfdez Mon, 2014-04-21 06:47 |
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membrane protein packing prediction by djpittdj » Fri, 2012-01-13 08:55 |
4 |
4,227 |
by pardave Mon, 2014-04-21 06:47 |
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Creating new residue type for pyridoxal phosphate bound to lysine (LLP) [Solved] by franfdez » Sat, 2012-01-28 11:39 |
1 |
3,338 |
by franfdez Mon, 2014-04-21 06:47 |
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RE: Loop Modeling and Beta-strand design by bharat_46010 » Sun, 2012-02-12 16:34 |
19 |
16,542 |
by smlewis Mon, 2014-04-21 06:47 |
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ERROR: filtered_alignments.size() > 0 by jhbrown » Tue, 2012-01-17 13:28 |
2 |
2,539 |
by jhbrown Mon, 2014-04-21 06:47 |
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Changing Monte Carlo temperature for relax by jruhym » Thu, 2012-02-02 15:18 |
1 |
2,553 |
by rmoretti Mon, 2014-04-21 06:47 |
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Fragment file viewers by MajorID » Fri, 2012-02-24 20:57 |
2 |
2,790 |
by smlewis Mon, 2014-04-21 06:47 |
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using defined WATERS in PACKING by ast » Wed, 2012-01-11 09:11 |
4 |
4,383 |
by smlewis Mon, 2014-04-21 06:47 |
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Rosetta3.3 enzyme_design errors by jtmacd » Wed, 2012-01-25 03:33 |
7 |
8,047 |
by rmoretti Mon, 2014-04-21 06:47 |
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RosettaDesign Server, reproducing optimized interface conformation by AlexanderMetz » Thu, 2012-02-09 10:41 |
1 |
3,403 |
by smlewis Mon, 2014-04-21 06:47 |
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Comparing scores by renedominik » Mon, 2012-02-27 05:21 |
4 |
4,649 |
by renedominik Mon, 2014-04-21 06:47 |
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restricting space in a design by ast » Tue, 2012-01-17 06:31 |
2 |
2,747 |
by rmoretti Mon, 2014-04-21 06:47 |
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error during docking by zhisheng » Thu, 2012-02-02 12:10 |
10 |
9,376 |
by smlewis Mon, 2014-04-21 06:47 |
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How to install Rosetta in Redhat Linux ? by ajaniharesh » Fri, 2012-02-24 02:32 |
1 |
5,530 |
by smlewis Mon, 2014-04-21 06:47 |
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Relax Refinement for complecated targets by jiongzhang » Fri, 2012-01-20 09:57 |
10 |
8,197 |
by jiongzhang Mon, 2014-04-21 06:47 |
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protein-protien docking with uniform trans by lkingsle » Thu, 2012-02-09 07:19 |
1 |
2,683 |
by mpacella Mon, 2014-04-21 06:47 |
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core.scoring.rms_util: WARNING: CA_rmsd out of range... by mdyini » Sat, 2012-02-25 16:14 |
4 |
4,379 |
by mdyini Mon, 2014-04-21 06:47 |
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Relax protocol details for Rosetta 3.1 by Matthys » Sun, 2012-01-15 10:00 |
4 |
4,526 |
by rmoretti Mon, 2014-04-21 06:47 |
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Docking double-stranded DNA to a protein by xpzhang » Tue, 2012-01-31 12:35 |
5 |
8,884 |
by xpzhang Mon, 2014-04-21 06:47 |
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Criteria on the calculation of Irmsd of the protein-protein interface by yzq » Tue, 2012-02-21 07:06 |
3 |
4,284 |
by smlewis Mon, 2014-04-21 06:47 |
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dun10 by jadolfbr » Thu, 2012-01-19 12:16 |
5 |
5,141 |
by jadolfbr Mon, 2014-04-21 06:47 |
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How to score the crystal structure? by vsjasion » Fri, 2011-11-18 15:49 |
1 |
2,442 |
by rmoretti Mon, 2014-04-21 06:47 |
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Re: Multigraft by bharat_46010 » Wed, 2011-12-07 17:24 |
35 |
32,272 |
by rmoretti Mon, 2014-04-21 06:47 |
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Loop Modeling with fixed backbone by bharat_46010 » Mon, 2011-12-19 05:20 |
9 |
8,737 |
by bharat_46010 Mon, 2014-04-21 06:47 |
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Modelling a loopless structure by jhbrown » Tue, 2011-11-22 11:39 |
2 |
3,005 |
by jhbrown Mon, 2014-04-21 06:47 |
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start pose and native pose don't match in lengh by zhisheng » Thu, 2011-12-15 10:23 |
1 |
2,434 |
by smlewis Mon, 2014-04-21 06:47 |
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Difference between score and silent_score when silent files are combined by justin » Tue, 2012-01-03 06:44 |
4 |
4,444 |
by justin Mon, 2014-04-21 06:47 |
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Creation of core.* file in current running directory by alejandro » Tue, 2011-12-06 06:19 |
2 |
3,134 |
by alejandro Mon, 2014-04-21 06:47 |
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How do you implement phosphoserine in ab -initio folding? by smiruthi » Fri, 2011-12-16 14:45 |
10 |
10,027 |
by brspurri Mon, 2014-04-21 06:47 |
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Bug in cluster? by nitroamos » Mon, 2011-11-21 12:53 |
1 |
2,319 |
by smlewis Mon, 2014-04-21 06:47 |
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How to generate score file for loop refinement or modelling? by zhisheng » Fri, 2011-12-09 05:15 |
2 |
3,268 |
by zhisheng Mon, 2014-04-21 06:47 |
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RMS in Score Application by brspurri » Thu, 2011-12-29 09:19 |
1 |
4,079 |
by smlewis Mon, 2014-04-21 06:47 |
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Rosetta releases and revision numbers by ShaneOConnor » Thu, 2011-11-17 13:55 |
2 |
4,663 |
by smlewis Mon, 2014-04-21 06:47 |
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Energy calculation for protein design by Filipe » Sat, 2011-11-26 15:01 |
4 |
7,394 |
by Filipe Mon, 2014-04-21 06:47 |
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Rosetta ab initio with disordered regions by smiruthi » Thu, 2011-12-15 14:37 |
2 |
2,945 |
by smiruthi Mon, 2014-04-21 06:47 |
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RosettaMatch by jtmacd » Wed, 2012-01-11 06:50 |
5 |
10,175 |
by jtmacd Mon, 2014-04-21 06:47 |
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Hbond tripped by alejandro » Mon, 2011-11-21 04:17 |
3 |
3,825 |
by alejandro Mon, 2014-04-21 06:47 |
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Pair potential by jadolfbr » Thu, 2011-12-08 08:06 |
1 |
2,703 |
by smlewis Mon, 2014-04-21 06:47 |
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I can't find the workflow about modeling disordered regsion using rosetta? by lihowe » Thu, 2011-12-29 03:45 |
2 |
3,115 |
by wangyr Mon, 2014-04-21 06:47 |
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How does one prevent Rosetta from connecting two separate chains? by jhbrown » Thu, 2011-12-15 14:08 |
7 |
6,973 |
by Anonymous Mon, 2014-04-21 06:47 |
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RosettaHoles by ge0rgekh0ury » Mon, 2012-01-09 09:01 |
6 |
6,236 |
by Anonymous Mon, 2014-04-21 06:47 |
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Error when clustering the output from a docking study by jos » Thu, 2011-09-08 03:26 |
2 |
3,436 |
by jos Mon, 2014-04-21 06:47 |
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General Forum Suggestion by jadolfbr » Thu, 2011-09-29 08:11 |
0 |
2,794 |
by jadolfbr Mon, 2014-04-21 06:47 |
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Constraining a docking study by jos » Tue, 2011-10-18 05:26 |
2 |
2,670 |
by rmoretti Mon, 2014-04-21 06:47 |
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Rosetta atoms types for enzyme design by bharat_46010 » Thu, 2011-11-10 06:01 |
2 |
3,976 |
by rmoretti Mon, 2014-04-21 06:47 |
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Can i start again the job ? by byin » Thu, 2011-09-15 01:19 |
6 |
5,474 |
by byin Mon, 2014-04-21 06:47 |
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-fake_native Error - not found in command line of rosetta 3.2.1 by vsjasion » Wed, 2011-10-05 12:01 |
2 |
3,364 |
by vsjasion Mon, 2014-04-21 06:47 |
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