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Rosetta 3 - General
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Flex-pep-docking (ab-initio mode) by ate » Wed, 2021-06-16 19:19 |
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752 |
by ate Wed, 2021-06-16 19:19 |
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Cartesian_ddG mutfile error by paulbo » Mon, 2024-02-05 01:25 |
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362 |
by paulbo Mon, 2024-02-05 01:25 |
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possible error in make_fragments.pl and fix by DanielK » Fri, 2012-04-27 02:23 |
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1,723 |
by DanielK Mon, 2014-04-21 06:47 |
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SARS-CoV-2: call for compound predictions against protease by matteoferla » Sun, 2020-03-22 05:29 |
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1,025 |
by matteoferla Sun, 2020-03-22 05:29 |
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using full atom constraint in docking by rohi » Thu, 2020-10-15 10:28 |
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1,055 |
by rohi Thu, 2020-10-15 10:28 |
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What should I do to lower down the fa_sol scores? by JasonIsaac » Mon, 2022-12-05 18:57 |
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595 |
by JasonIsaac Mon, 2022-12-05 18:57 |
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Ab Initio folding of protein with multiple chains? by myang » Tue, 2009-11-24 13:01 |
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1,648 |
by myang Mon, 2014-04-21 06:47 |
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Hamiltonian Exchange by JSK » Mon, 2024-03-18 12:44 |
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138 |
by JSK Tue, 2024-03-19 09:21 |
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ligand docking error by YuFei » Wed, 2020-04-22 17:27 |
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961 |
by YuFei Wed, 2020-04-22 17:27 |
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Intel MPI: early exit due to job process stopped. by jackzzs » Mon, 2023-05-15 02:57 |
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1,244 |
by jackzzs Mon, 2023-05-15 03:17 |
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Docking Metalloprotein-Protein by fgomes » Fri, 2019-11-22 19:12 |
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1,191 |
by fgomes Fri, 2019-11-22 19:12 |
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How can I use InterfaceScore terms in docking as GenericMonteCarlo criterion by wwwmrzkwww » Sun, 2021-08-15 00:19 |
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820 |
by wwwmrzkwww Sun, 2021-08-15 00:19 |
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Failure to produce a cst file by biotech » Wed, 2022-10-26 11:17 |
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541 |
by biotech Wed, 2022-10-26 11:17 |
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Searching density map using real space correlation by ahmadkhalifa » Fri, 2018-12-28 00:28 |
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939 |
by ahmadkhalifa Fri, 2018-12-28 00:28 |
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[ WARNING ] missing an atom: 1 H that depends on a nonexistent polymer connection! by Jane_002 » Tue, 2023-08-08 21:07 |
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564 |
by Jane_002 Tue, 2023-08-08 21:07 |
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Clustering error - Help, please by karolcia1010 » Wed, 2020-06-17 11:19 |
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919 |
by karolcia1010 Wed, 2020-06-17 11:19 |
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Meaning of Metalbinding_constraint by Corvin » Wed, 2021-05-19 07:54 |
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870 |
by Corvin Wed, 2021-05-19 07:54 |
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Clustering Poses from RosettaDock by ctaylor » Tue, 2009-12-29 06:38 |
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1,565 |
by ctaylor Mon, 2014-04-21 06:47 |
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Cryo-EM: problem with RosettaCM using multiple template models as input by Karol » Mon, 2016-08-29 05:26 |
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1,783 |
by Karol Mon, 2016-08-29 05:27 |
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Method to keep ATP in the certain position in the prepack step by ziqi1234 » Tue, 2017-11-21 05:55 |
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1,162 |
by ziqi1234 Tue, 2017-11-21 05:55 |
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incomparable ddG values by ela » Fri, 2018-08-31 02:53 |
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1,232 |
by ela Fri, 2018-08-31 02:53 |
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rna_denovo secstruct_general function by rvandamme » Mon, 2021-02-01 13:39 |
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898 |
by rvandamme Mon, 2021-02-01 13:39 |
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How to set jump between ligands by Zehui Zhou » Wed, 2023-02-15 04:48 |
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457 |
by Zehui Zhou Wed, 2023-02-15 07:12 |
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maxsub calculation in scoring app by abdullah » Thu, 2011-04-28 06:47 |
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1,724 |
by abdullah Mon, 2014-04-21 06:47 |
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Centroid disulfide score weights by vasek » Wed, 2014-01-22 23:34 |
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1,623 |
by vasek Mon, 2014-04-21 06:48 |
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Finding affinity-reducing mutants towards a ligand in Ligand-based interface design protocol by adityapadhi » Wed, 2020-06-24 01:29 |
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889 |
by adityapadhi Wed, 2020-06-24 01:29 |
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Problems with ICOOR when generating polymer params file by liuwenxi » Tue, 2022-08-09 08:33 |
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530 |
by liuwenxi Tue, 2022-08-09 08:33 |
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FARFAR2 error: [ERROR: Not complementary at positions] by Eden » Sat, 2023-11-18 02:39 |
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236 |
by Eden Sat, 2023-11-18 02:39 |
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General Forum Suggestion by jadolfbr » Thu, 2011-09-29 08:11 |
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2,797 |
by jadolfbr Mon, 2014-04-21 06:47 |
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lDDT: local Distance Difference Test implemented? by ipetrik_ambry » Wed, 2017-12-06 13:11 |
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1,345 |
by ipetrik_ambry Wed, 2017-12-06 13:11 |
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Constraints use in RosettaCM by a.book » Wed, 2018-10-03 12:11 |
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1,467 |
by a.book Wed, 2018-10-03 15:56 |
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Does it make sense to perform Docking on a complex? by chrisHKL » Mon, 2020-02-17 09:12 |
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913 |
by chrisHKL Mon, 2020-02-17 09:12 |
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InterfaceDdGMover and ResfileReader by asaf.farhi » Wed, 2022-04-13 15:05 |
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817 |
by asaf.farhi Wed, 2022-04-13 15:05 |
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N-Terminal Galactose by SebastianBB » Mon, 2022-11-21 08:33 |
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547 |
by SebastianBB Mon, 2022-11-21 08:33 |
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Homology modeling starter script by gobli033 » Thu, 2010-04-01 07:27 |
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1,538 |
by gobli033 Mon, 2014-04-21 06:47 |
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FARFAR and RNA_Tools: problem executing the command helix_preassemble_setup.py by obdulia » Wed, 2018-04-18 00:45 |
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1,104 |
by obdulia Wed, 2018-04-18 00:45 |
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"Rosetta predictions of density, heat of vaporization (∆Hvap) and heat capacity (Cp(l))" by matteoferla » Tue, 2020-07-14 01:51 |
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1,116 |
by matteoferla Tue, 2020-07-14 01:51 |
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Get fasta from PDB script correction - Solved by ialvy » Tue, 2022-08-30 00:00 |
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549 |
by ialvy Tue, 2022-08-30 00:00 |
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Could somebody interpret the rosetta's cluster application result? by exchhattu » Mon, 2009-11-16 01:58 |
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1,739 |
by exchhattu Mon, 2014-04-21 06:47 |
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cluster results by albumns » Sun, 2010-07-18 23:59 |
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1,467 |
by albumns Mon, 2014-04-21 06:47 |
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SnugDock or RosettaDock for HDX-MS data by hanzhiz » Thu, 2021-12-16 09:18 |
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674 |
by hanzhiz Thu, 2021-12-16 09:18 |
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To smlewis............parallel job submission by anusmita_sahoo » Mon, 2010-04-19 22:28 |
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1,567 |
by anusmita_sahoo Mon, 2014-04-21 06:47 |
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what factors determine the lowest (best) LigInterfaceEnergy score? by jmaly » Wed, 2020-08-26 13:07 |
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1,077 |
by jmaly Wed, 2020-09-02 16:16 |
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Rosettascript - change residue number and chain ID by cttm4a1 » Wed, 2022-09-14 23:40 |
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522 |
by cttm4a1 Wed, 2022-09-14 23:40 |
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Scripts and/or strategies for saturation mutagenesis simulations? by drinker615 » Tue, 2024-04-16 18:43 |
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32 |
by drinker615 Tue, 2024-04-16 18:43 |
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Membrane AbInitio by coxford » Sat, 2012-12-22 05:06 |
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2,584 |
by coxford Mon, 2014-04-21 06:47 |
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Error using FilterScan with rosettascripts by SenyorDrew » Tue, 2016-12-13 14:29 |
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1,329 |
by SenyorDrew Tue, 2016-12-13 14:29 |
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Show I be using beta_nov16 scorefxn? by matteoferla » Thu, 2021-04-01 04:06 |
0 |
1,216 |
by matteoferla Thu, 2021-04-01 04:06 |
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RosettaDock-3.2 output by Zjq1998 » Wed, 2022-06-15 23:54 |
0 |
508 |
by Zjq1998 Wed, 2022-06-15 23:54 |
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Memory error - double free or corruption by almeida85 » Thu, 2023-05-25 06:18 |
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398 |
by almeida85 Thu, 2023-05-25 06:18 |
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RNA & protein folding by sdh » Thu, 2009-12-17 00:58 |
0 |
1,634 |
by sdh Mon, 2014-04-21 06:47 |
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benchmark for rosetta3.1 by anusmita_sahoo » Tue, 2010-05-04 22:05 |
0 |
1,535 |
by anusmita_sahoo Mon, 2014-04-21 06:47 |
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RosettaCM: help to generate similar models as those from Robetta Server by haom » Wed, 2020-09-09 09:19 |
0 |
1,018 |
by haom Wed, 2020-09-09 09:19 |
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Error with sequence_tolerance.R processing the checkpoint files, *.ga.entities and *.ga.generations. by He Xiao » Mon, 2022-11-07 03:41 |
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549 |
by He Xiao Mon, 2022-11-07 04:10 |
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distance contraints file by tricia » Wed, 2009-06-10 13:28 |
0 |
1,507 |
by tricia Mon, 2014-04-21 06:47 |
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error message of runing make_fragment by joseph » Fri, 2010-11-12 11:46 |
0 |
1,874 |
by joseph Mon, 2014-04-21 06:47 |
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RosettaMatch Problem by David » Tue, 2019-01-22 12:23 |
0 |
2,046 |
by David Tue, 2019-01-22 12:23 |
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Using NCAA by ate » Sat, 2021-05-01 02:22 |
0 |
901 |
by ate Sat, 2021-05-01 02:22 |
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How to add new Movers to Rosetta by mb0261 » Thu, 2022-06-30 10:48 |
0 |
500 |
by mb0261 Thu, 2022-06-30 10:48 |
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Generating Params File for water molecule by Ahmed Raslan » Thu, 2023-08-17 13:13 |
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533 |
by Ahmed Raslan Thu, 2023-08-17 13:13 |
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Segmentation fault on antibody structure prediction by dkesar » Fri, 2021-06-04 19:09 |
0 |
784 |
by dkesar Fri, 2021-06-04 19:09 |
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Rosetta@cloud -- Macromolecular modeling in the cloud, Beta 1 is released! by xujc » Wed, 2012-10-24 11:15 |
0 |
4,225 |
by xujc Mon, 2014-04-21 06:47 |
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Need help finding the best predicted structure after running ab initio by burkheadlab » Tue, 2011-06-21 11:18 |
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2,091 |
by burkheadlab Mon, 2014-04-21 06:47 |
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abnitio in only part of pdb and map fitting by tiagogomes89 » Mon, 2014-12-15 08:57 |
0 |
1,557 |
by tiagogomes89 Mon, 2014-12-15 08:57 |
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Obtaining all PDB IDs containing similar binding sites for a specific ligand by Antonia » Wed, 2021-06-16 12:30 |
0 |
739 |
by Antonia Wed, 2021-06-16 12:30 |
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Designing Feasible Backbones by csvajda » Sat, 2022-08-13 08:08 |
0 |
579 |
by csvajda Sat, 2022-08-13 08:08 |
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possible error in make_fragments.pl and fix by DanielK » Fri, 2012-04-27 02:21 |
0 |
1,466 |
by DanielK Mon, 2014-04-21 06:47 |
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How to export high energy state pdb out of backrub? by whiteqiu » Mon, 2021-03-01 18:32 |
0 |
831 |
by whiteqiu Mon, 2021-03-01 18:32 |
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rosetta scripts to superimpose multiple segments by rlwoltz » Fri, 2022-04-29 15:15 |
0 |
601 |
by rlwoltz Fri, 2022-04-29 15:15 |
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TaskOperations with AntibodyDesignMover by chenna » Sun, 2023-04-23 23:52 |
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359 |
by chenna Sun, 2023-04-23 23:52 |
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Help with file in article Kemp elimination catalysts by computational enzyme design by Wenithor » Sat, 2021-10-09 07:23 |
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684 |
by Wenithor Sat, 2021-10-09 07:23 |
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Predicting structure of protein after a few mutations by Delfosse57 » Thu, 2022-12-01 20:40 |
0 |
576 |
by Delfosse57 Thu, 2022-12-01 20:40 |
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how to perform model quality assessment of rosetta generated models? by Danielsebas » Tue, 2019-09-24 05:03 |
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960 |
by Danielsebas Tue, 2019-09-24 05:03 |
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Comparatively modelled chains are far apart in final structure while the template pdb has all chains in a close-knit complex by Sunidhi » Sun, 2020-11-01 11:00 |
0 |
925 |
by Sunidhi Sun, 2020-11-01 11:01 |
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SecundaryStructure Filter by Soler » Sat, 2021-11-20 23:41 |
0 |
752 |
by Soler Sat, 2021-11-20 23:41 |
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Molfile to Params File Issue by jferrie » Mon, 2018-04-23 15:25 |
0 |
1,403 |
by jferrie Mon, 2018-04-23 15:25 |
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enzyme design and scoring function by rohi » Fri, 2021-06-25 10:29 |
0 |
761 |
by rohi Fri, 2021-06-25 10:29 |
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Proper indexing of grafted residues by CCDEndsGraftMover by cttm4a1 » Wed, 2022-09-07 23:41 |
0 |
532 |
by cttm4a1 Wed, 2022-09-07 23:41 |
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JD3 FastRelax over MPI - crashes on relax completion/before writing output by aduffy33 » Tue, 2024-03-12 12:51 |
0 |
151 |
by aduffy33 Tue, 2024-03-12 12:52 |
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(eliminated) by jiyongpark.77 » Tue, 2009-11-24 00:56 |
0 |
1,627 |
by jiyongpark.77 Mon, 2014-04-21 06:47 |
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3.1 CLUSTERING OUTPUT by w107kdk » Mon, 2009-12-07 13:10 |
0 |
1,764 |
by w107kdk Mon, 2014-04-21 06:47 |
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Error using pHDock by SenyorDrew » Thu, 2016-08-11 05:56 |
0 |
1,643 |
by SenyorDrew Thu, 2016-08-11 05:56 |
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RMSD filter by Soler » Sat, 2022-01-15 22:09 |
0 |
731 |
by Soler Sat, 2022-01-15 22:09 |
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Structure-sequence alignment generation with selected PDB how? by nzsuzsanna » Tue, 2016-05-10 07:39 |
0 |
1,370 |
by nzsuzsanna Tue, 2016-05-10 07:39 |
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MakeRotLib by yinasun » Fri, 2019-07-26 02:17 |
0 |
994 |
by yinasun Fri, 2019-07-26 02:17 |
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How RosettaCM can perform part of C terminal domain (CTD) structure prediction without proper template structures (coordinates) by haom » Tue, 2020-09-01 13:21 |
0 |
918 |
by haom Tue, 2020-09-01 18:50 |
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calcium metal nomenclature: Rosetta_cm confusing HETATM CA (calcium) with ATOM CA (alpha-carbon) by rlwoltz » Tue, 2021-08-03 23:26 |
0 |
1,064 |
by rlwoltz Tue, 2021-08-03 23:26 |
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On iterations in ddg_monomer by Proteinmechanic » Fri, 2022-09-30 21:23 |
0 |
521 |
by Proteinmechanic Fri, 2022-09-30 21:23 |
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ab initio structure modeling by pci112 » Mon, 2021-04-12 08:07 |
0 |
923 |
by pci112 Mon, 2021-04-12 08:12 |
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Antigen-antibody modeling by aastha.pal » Mon, 2022-06-27 09:34 |
0 |
529 |
by aastha.pal Mon, 2022-06-27 09:34 |
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GALigandDock errors by Delfosse57 » Mon, 2023-08-07 13:16 |
0 |
466 |
by Delfosse57 Mon, 2023-08-07 13:16 |
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Suggestions for email notification & "category" for post by lanselibai » Sun, 2014-11-16 10:44 |
0 |
1,546 |
by lanselibai Sun, 2014-11-16 10:44 |
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alignblast.pl truncated file by rlwoltz » Mon, 2019-03-11 18:32 |
0 |
1,186 |
by rlwoltz Mon, 2019-03-11 18:32 |
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reading of AtomPair failed in relax with constraint by hajar » Wed, 2020-06-10 10:02 |
0 |
1,341 |
by hajar Wed, 2020-06-10 11:17 |
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Porblem with Rosetta Homology Modelling by Karthik » Wed, 2022-07-13 23:45 |
0 |
546 |
by Karthik Wed, 2022-07-13 23:45 |
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Problem with sugar parameters by Martin Floor » Sat, 2023-10-07 10:17 |
0 |
471 |
by Martin Floor Sat, 2023-10-07 10:17 |
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Error in rosetta_scripts.mpi.linuxgccrelease: double free or corruption (!prev): 0x0000000007697a90 by almeida85 » Thu, 2022-11-17 01:04 |
0 |
566 |
by almeida85 Thu, 2022-11-17 01:04 |
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Clustering TM domain of transmembrane protein by justin » Sun, 2010-03-21 23:26 |
0 |
1,560 |
by justin Mon, 2014-04-21 06:47 |
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How to create a native file for Protein-Protein docking by Kotimedidhi » Mon, 2020-06-22 08:10 |
0 |
854 |
by Kotimedidhi Mon, 2020-06-22 08:10 |
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Methodology Feedback with As(III) and Pb(II) Binding by rnogy » Mon, 2023-11-06 17:05 |
0 |
251 |
by rnogy Mon, 2023-11-06 17:06 |
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