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Error when attempting to relax pdb, "flag_input_relax" not found by Wexter300 » Mon, 2023-01-23 11:32 |
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1,090 |
by Wexter300 Wed, 2023-01-25 12:34 |
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Error with options -dunbrack_prob_buried_semi and -dunbrack_prob_nonburied_semi by SamuelGong » Fri, 2023-01-27 06:20 |
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971 |
by rmoretti Mon, 2023-01-30 08:04 |
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Should all input structures to energy_based_clustering have an output pdb file? by Brian Wiley » Mon, 2023-01-30 20:42 |
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777 |
by Brian Wiley Tue, 2023-01-31 19:08 |
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Run protein-protein docking parallelly by mpi by Zehui Zhou » Thu, 2023-02-02 06:23 |
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1,035 |
by Zehui Zhou Fri, 2023-02-03 05:51 |
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LHOC script problem in Rosetta Antibody by ziheng@mit.edu » Thu, 2019-04-25 14:19 |
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2,303 |
by Brian Wiley Sat, 2023-02-04 23:26 |
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Error in H3_modeling_scores.fasc file from antibody_H3 program by Brian Wiley » Sat, 2023-02-04 23:41 |
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406 |
by Brian Wiley Sat, 2023-02-04 23:43 |
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Grafting using antibody.mpi.linuxgccrelease , the modelled structure does not have constant region of the antibody. by SubhaK » Thu, 2023-01-26 21:29 |
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601 |
by rmoretti Mon, 2023-02-06 14:35 |
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Calculating shape complementarity of ligand and protein by varunmc99 » Tue, 2023-01-17 11:29 |
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694 |
by rmoretti Mon, 2023-02-06 14:42 |
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No values for total score while running Rosetta score file. by Shweata Maurya » Wed, 2023-02-01 02:05 |
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1,195 |
by Shweata Maurya Wed, 2023-02-08 03:19 |
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How to add uncommon metal elements into Rosetta and make it recognizable? by JasonIsaac » Thu, 2023-02-09 00:08 |
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1,114 |
by JasonIsaac Sat, 2023-02-11 00:44 |
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Segmentation fault with nstruct > 1 by Brian Wiley » Sun, 2023-02-12 20:46 |
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432 |
by Brian Wiley Sun, 2023-02-12 20:46 |
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Truncating a protein using rosetta by Wexter300 » Mon, 2023-02-13 12:05 |
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717 |
by Wexter300 Mon, 2023-02-13 13:04 |
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Score function in protein-protein docking with constrains by Zehui Zhou » Mon, 2023-02-06 03:31 |
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975 |
by Zehui Zhou Wed, 2023-02-15 05:40 |
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How to set jump between ligands by Zehui Zhou » Wed, 2023-02-15 04:48 |
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455 |
by Zehui Zhou Wed, 2023-02-15 07:12 |
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Rosetta remodelling - how to change the added residue type instead of just VAL by xuezhi » Wed, 2023-02-15 14:00 |
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427 |
by xuezhi Wed, 2023-02-15 14:00 |
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can't access rosetta commercial license download via given URL from CoMotion by y_atsmonraz » Tue, 2023-02-14 11:04 |
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1,831 |
by rmoretti Thu, 2023-02-16 13:48 |
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How to handle/retain Metals (Zn, Ca) inside the Protein? by aniyaz » Wed, 2023-01-11 03:21 |
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1,685 |
by rmoretti Mon, 2023-02-20 16:07 |
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Which application/mover should I use to evaluate the ddg between apo enzyme and enzyme binding with transition state? by JasonIsaac » Wed, 2023-02-22 18:36 |
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by JasonIsaac Wed, 2023-02-22 18:36 |
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Error when trying to use xml script to design PDB by Wexter300 » Fri, 2023-02-24 13:29 |
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647 |
by rmoretti Fri, 2023-02-24 13:58 |
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RuntimeError: CUDA out of memory. by ravi.thakkar » Tue, 2023-03-07 00:27 |
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807 |
by rmoretti Tue, 2023-03-07 08:18 |
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Your compiler does not have full support for C++ll regex, and therefore can't suport RegEx_based_CDR_Detector/antitody grafting. by ldx022 » Thu, 2023-03-09 17:03 |
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1,096 |
by ldx022 Sat, 2023-03-11 16:53 |
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Method for adding residues into PDB's w/ RosettaScripts. by Wexter300 » Wed, 2023-03-15 13:07 |
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624 |
by rmoretti Thu, 2023-03-16 11:46 |
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Error with residue selectors not counting indices correctly. by Wexter300 » Tue, 2023-04-04 11:04 |
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526 |
by ajasja Wed, 2023-04-05 00:20 |
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how to generate _prepro.rama file for a customized beta-amino acid residues? by wwwmrzkwww » Sun, 2023-04-23 14:25 |
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377 |
by wwwmrzkwww Sun, 2023-04-23 14:25 |
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TaskOperations with AntibodyDesignMover by chenna » Sun, 2023-04-23 23:52 |
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358 |
by chenna Sun, 2023-04-23 23:52 |
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Any general way to generate .params file for beta and gamma NCAA? by wwwmrzkwww » Wed, 2023-04-26 12:35 |
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384 |
by wwwmrzkwww Wed, 2023-04-26 12:35 |
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rosie github log in by YUANXU » Tue, 2023-04-25 20:13 |
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by Sergey Thu, 2023-04-27 12:03 |
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How many rifdock can I run at a time on a 64 CPUs and 512GB memory server? by JasonIsaac » Tue, 2023-05-02 03:39 |
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by JasonIsaac Tue, 2023-05-02 03:39 |
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location of define_interface.py by rohi » Mon, 2020-10-26 19:42 |
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1,943 |
by rmoretti Tue, 2023-05-09 15:32 |
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Converting all residues to poly-Gly/Ala by jtpi6174 » Tue, 2023-05-09 14:14 |
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687 |
by jtpi6174 Tue, 2023-05-09 15:51 |
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Calculating SAP score using RosettaScripts by varunmc99 » Fri, 2023-05-12 11:03 |
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850 |
by varunmc99 Fri, 2023-05-12 11:49 |
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Intel MPI: early exit due to job process stopped. by jackzzs » Mon, 2023-05-15 02:57 |
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1,242 |
by jackzzs Mon, 2023-05-15 03:17 |
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Figuring out the input flags required for this script by jjung380 » Wed, 2023-04-19 14:17 |
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1,032 |
by rmoretti Mon, 2023-05-15 15:23 |
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ERROR: beta_nov16(.wts) requested, but -corrections::beta_nov16 not set to true. This leads to a garbage scorefunction. by sia » Mon, 2023-05-08 06:36 |
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1,464 |
by rmoretti Tue, 2023-05-16 07:10 |
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Missing atoms, unable to fill in missing atoms by kwu030 » Fri, 2023-05-05 12:58 |
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3,943 |
by kwu030 Thu, 2023-05-18 08:31 |
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Changing amino acid profile while keeping the backbone conformation between 2 protein structures (need help) by seamoon » Wed, 2023-05-24 07:46 |
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355 |
by seamoon Wed, 2023-05-24 07:46 |
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Scoring correlation with electron density map by mrosam » Thu, 2023-05-25 05:14 |
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355 |
by mrosam Thu, 2023-05-25 05:14 |
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Memory error - double free or corruption by almeida85 » Thu, 2023-05-25 06:18 |
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397 |
by almeida85 Thu, 2023-05-25 06:18 |
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Questions about gen_apo_grids by JasonIsaac » Sat, 2023-06-17 00:20 |
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334 |
by JasonIsaac Sat, 2023-06-17 00:20 |
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different relaxed energy scores for one same protein structure by ivareve125 » Sun, 2023-07-16 17:54 |
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578 |
by ivareve125 Mon, 2023-07-17 17:37 |
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GALigandDock errors by Delfosse57 » Mon, 2023-08-07 13:16 |
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465 |
by Delfosse57 Mon, 2023-08-07 13:16 |
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[ WARNING ] missing an atom: 1 H that depends on a nonexistent polymer connection! by Jane_002 » Tue, 2023-08-08 21:07 |
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563 |
by Jane_002 Tue, 2023-08-08 21:07 |
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Generating Params File for water molecule by Ahmed Raslan » Thu, 2023-08-17 13:13 |
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532 |
by Ahmed Raslan Thu, 2023-08-17 13:13 |
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Error when using published constraints file by Delfosse57 » Thu, 2023-08-17 11:22 |
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541 |
by ikalvet Mon, 2023-08-21 05:52 |
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Predicting conformations of mutated residues by Delfosse57 » Tue, 2023-08-22 12:26 |
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422 |
by rmoretti Wed, 2023-08-23 08:26 |
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RosettaDock - protonation states by LWilliamson » Tue, 2023-08-15 08:15 |
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1,304 |
by nannemdp Thu, 2023-08-24 08:21 |
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Replacing a single residue in a structure by Wexter300 » Sat, 2023-09-16 14:23 |
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497 |
by Wexter300 Sat, 2023-09-16 14:23 |
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Error in flex ddG tutorial by wentlewi » Sat, 2020-05-16 08:06 |
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1,833 |
by Alvin Yang Wed, 2023-10-04 03:34 |
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Problem with sugar parameters by Martin Floor » Sat, 2023-10-07 10:17 |
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470 |
by Martin Floor Sat, 2023-10-07 10:17 |
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Docking antibody to membrane protein by Yegor_Ko » Thu, 2023-10-12 07:37 |
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549 |
by Yegor_Ko Fri, 2023-10-20 01:35 |
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Unable to download Rosetta by Yair Tenorio » Mon, 2023-10-23 11:48 |
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444 |
by Yair Tenorio Mon, 2023-10-23 12:29 |
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ERROR: Assertion `build_sets_[ build_set_id ].restype().has( "1HA" )` failed. ERROR:: Exit from: src/protocols/match/upstream/Pr by alove1 » Sat, 2023-10-28 17:19 |
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604 |
by alove1 Mon, 2023-10-30 13:18 |
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JD3 w/ Silent file output crashing - Option filename not found by aduffy33 » Mon, 2023-10-30 13:40 |
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421 |
by aduffy33 Mon, 2023-10-30 15:35 |
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protein-protein docking by LUOD » Thu, 2023-11-02 18:23 |
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247 |
by LUOD Thu, 2023-11-02 18:25 |
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FARFAR2 Error With Secondary Structure File by bdh81 » Thu, 2023-11-02 09:01 |
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463 |
by bdh81 Sun, 2023-11-05 16:04 |
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Methodology Feedback with As(III) and Pb(II) Binding by rnogy » Mon, 2023-11-06 17:05 |
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249 |
by rnogy Mon, 2023-11-06 17:06 |
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FARFAR2 error: [ERROR: Not complementary at positions] by Eden » Sat, 2023-11-18 02:39 |
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235 |
by Eden Sat, 2023-11-18 02:39 |
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Error when running AqueousPoreFinder protocol by mluengo » Mon, 2023-12-11 02:55 |
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267 |
by mluengo Mon, 2023-12-11 03:13 |
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Error about rifdocking by ng98 » Mon, 2024-01-08 16:21 |
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265 |
by rmoretti Tue, 2024-01-09 23:41 |
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[Question] How do the <FILTERS> confidence work? by jrom » Wed, 2024-01-24 10:25 |
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229 |
by rmoretti Wed, 2024-01-24 11:55 |
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ddG of multiple mutations on a monomer by hltorresvera » Mon, 2021-02-01 16:54 |
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2,225 |
by paulbo Sun, 2024-02-04 22:03 |
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Cartesian_ddG mutfile error by paulbo » Mon, 2024-02-05 01:25 |
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362 |
by paulbo Mon, 2024-02-05 01:25 |
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Rigidifying ligand by Daniel_Levin » Sun, 2024-02-18 12:10 |
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281 |
by Daniel_Levin Sun, 2024-02-18 12:10 |
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Global Docking with output analysis RMS by kwu030 » Fri, 2024-02-23 09:17 |
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230 |
by rmoretti Mon, 2024-02-26 08:24 |
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setting timeout option in MPI run by syntekabio2019 » Mon, 2024-02-26 01:09 |
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409 |
by rmoretti Wed, 2024-02-28 09:20 |
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Filters saying atom type does not exist on residue by mdm95 » Mon, 2024-03-04 15:13 |
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174 |
by mdm95 Tue, 2024-03-05 14:05 |
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Segmentation Fault by ileanexis » Mon, 2024-03-11 08:53 |
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123 |
by ileanexis Mon, 2024-03-11 08:53 |
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JD3 FastRelax over MPI - crashes on relax completion/before writing output by aduffy33 » Tue, 2024-03-12 12:51 |
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151 |
by aduffy33 Tue, 2024-03-12 12:52 |
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Hamiltonian Exchange by JSK » Mon, 2024-03-18 12:44 |
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138 |
by JSK Tue, 2024-03-19 09:21 |
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Canceling jobs - RosettaDock5.0 by katie » Tue, 2024-04-09 12:30 |
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47 |
by katie Tue, 2024-04-09 12:30 |
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Scripts and/or strategies for saturation mutagenesis simulations? by drinker615 » Tue, 2024-04-16 18:43 |
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32 |
by drinker615 Tue, 2024-04-16 18:43 |
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Problem with relaxing a PDB around a chemically bound ligand by drinker615 » Sat, 2024-04-06 16:04 |
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219 |
by drinker615 Tue, 2024-04-16 19:06 |
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Discrepancies between Foldit fa_rep score and Rosseta jd2 score fa_rep score by mrosam » Fri, 2024-04-19 07:57 |
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33 |
by mrosam Fri, 2024-04-19 07:57 |
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clustering PDBs from docking by jbujons » Wed, 2024-04-24 08:34 |
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59 |
by jbujons Wed, 2024-04-24 09:34 |
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Issues with rosetta numbering and keeping ligand when relaxing molecule. by Wexter300 » Sun, 2024-04-28 14:37 |
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18 |
by Wexter300 Sun, 2024-04-28 14:39 |
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