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Rosetta++ - General

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Sticky topic Sticky: READ ME FIRST
by rmoretti » Fri, 2015-09-04 15:23
1
2,536 by rmoretti
Tue, 2017-06-20 08:48
Normal topic working with silent output - mergin, clustering and extracting
by kosa » Thu, 2008-05-15 05:54
1
1,531 by yiliu
Mon, 2014-04-21 06:47
Normal topic Why so wried way?
by dikov » Fri, 2010-03-05 04:57
0
1,838 by dikov
Mon, 2014-04-21 06:47
Normal topic Why should I do prepack before docking?
by ice_flame » Wed, 2011-11-16 04:12
2
2,335 by ice_flame
Mon, 2014-04-21 06:47
Normal topic Why a paralleled Rosetta perform like a normal one?
by ice_flame » Mon, 2011-03-28 22:23
1
3,327 by smlewis
Mon, 2014-04-21 06:47
Normal topic Which vall version are make_fragment based on?
by lennylv » Thu, 2009-04-02 05:00
0
1,319 by lennylv
Mon, 2014-04-21 06:47
Normal topic what's the meaning of the Ab-Ag Dock with RosettaDock
by huairpan » Thu, 2009-10-15 23:26
2
2,590 by huairpan
Mon, 2014-04-21 06:47
Normal topic What's the difference between F and S labeled decoys?
by PaulaBanks » Mon, 2013-08-26 23:44
1
1,646 by rmoretti
Mon, 2014-04-21 06:48
Normal topic what is the F() in rosetta 2.3
by Lindsay » Fri, 2012-06-08 14:44
1
1,761 by smlewis
Mon, 2014-04-21 06:47
Normal topic weighted constraints
by mintseris » Mon, 2014-02-03 15:24
3
2,745 by rmoretti
Thu, 2014-02-06 09:06
Normal topic Using dipolar coupling restraints in Rosetta v2.3
by pager2 » Mon, 2010-03-08 14:54
0
1,691 by pager2
Mon, 2014-04-21 06:47
Normal topic Using -fibril mode
by jiyongpark.77 » Thu, 2008-11-20 19:18
1
1,473 by jiyongpark.77
Mon, 2014-04-21 06:47
Normal topic use of constraints
by anusmita_sahoo » Thu, 2010-06-10 10:54
0
1,432 by anusmita_sahoo
Mon, 2014-04-21 06:47
Normal topic Unrecognized Residues in RosettaDock
by mboggara » Sat, 2010-03-20 19:48
0
1,558 by mboggara
Mon, 2014-04-21 06:47
Normal topic Unable to determine sequence length from pdb file
by imartins » Tue, 2008-09-30 11:50
0
950 by imartins
Mon, 2014-04-21 06:47
Normal topic ulfated tyrosine in Rosetta
by yiliu » Thu, 2008-01-10 08:29
1
1,263 by yiliu
Mon, 2014-04-21 06:47
Normal topic To apply distance constraint to MULTIPLE residue pairs, what's the format?
by shirleyzheng » Mon, 2009-04-06 10:24
8
6,950 by wtscrystal
Mon, 2014-04-21 06:47
Normal topic To add/include unusual amino acids in RosettaDesign
by shirleyzheng » Mon, 2009-07-06 09:34
0
1,348 by shirleyzheng
Mon, 2014-04-21 06:47
Normal topic Timer
by Temsiri » Sun, 2008-11-09 06:57
0
893 by Temsiri
Mon, 2014-04-21 06:47
Normal topic the energy terms in fixbb
by tianbu » Sun, 2012-07-29 12:48
4
4,072 by tianbu
Mon, 2014-04-21 06:47
Normal topic test.fasta and test.dat files are not available in Rosetta2.3.0
by suj88 » Mon, 2009-03-23 17:14
1
1,677 by yiliu
Mon, 2014-04-21 06:47
Normal topic terminus capping
by mbellows » Wed, 2009-10-07 11:16
1
2,411 by mboggara
Mon, 2014-04-21 06:47
Normal topic Symmetric local protein docking
by efratmas » Mon, 2011-01-17 04:52
1
1,975 by smlewis
Mon, 2014-04-21 06:47
Normal topic symmetric design in rosetta3
by sdh » Wed, 2009-07-08 07:30
1
1,902 by smlewis
Mon, 2014-04-21 06:47
Normal topic Subclusters - what are they?
by Bob3k » Mon, 2009-06-15 05:58
0
1,498 by Bob3k
Mon, 2014-04-21 06:47
Normal topic starting sequence with flexible backbone design
by kmaksim » Mon, 2009-03-23 07:10
1
1,596 by vanita
Mon, 2014-04-21 06:47
Normal topic some Q/A about SnugDock
by jarod » Fri, 2010-04-30 20:02
0
1,729 by jarod
Mon, 2014-04-21 06:47
Normal topic some posts from old forum
by admin » Tue, 2008-04-22 11:05
0
1,615 by admin
Mon, 2014-04-21 06:47
Normal topic Single or multiple decoys from relax?
by kosa » Thu, 2008-05-15 06:11
2
1,627 by kosa
Mon, 2014-04-21 06:47
Normal topic Side chain sampling
by mayo » Wed, 2009-04-15 10:14
1
1,867 by kaufmann
Mon, 2014-04-21 06:47
Normal topic sequence variability in rosetta design
by sdh » Thu, 2009-10-15 03:44
1
1,863 by smlewis
Mon, 2014-04-21 06:47
Normal topic Scoring Weights
by AndrewBworth » Tue, 2009-07-28 18:08
1
2,070 by momeara
Mon, 2014-04-21 06:47
Normal topic run_prof.py
by joseph » Fri, 2010-11-05 14:38
0
1,483 by joseph
Mon, 2014-04-21 06:47
Normal topic RosettaDock: questions about Fab file and constraints
by lucasimonelli » Thu, 2008-10-09 05:57
3
2,024 by yiliu
Mon, 2014-04-21 06:47
Normal topic RosettaDock with loop rebuild HOWTO ?
by lcavallo » Thu, 2009-06-04 09:12
4
3,326 by mchldln
Mon, 2014-04-21 06:47
Normal topic RosettaDock and -flex_peptide
by pshannon » Tue, 2008-09-16 17:56
1
1,222 by yiliu
Mon, 2014-04-21 06:47
Normal topic RosettaDesign parameters
by gbeckham » Tue, 2008-07-01 18:03
4
2,594 by yiliu
Mon, 2014-04-21 06:47
Normal topic RosettaDesign (each run produces the same sequence with many GLY residues )
by shirleyzheng » Wed, 2009-05-13 10:25
4
3,970 by shirleyzheng
Mon, 2014-04-21 06:47
Normal topic RosettaAntibody, Fv without terminal 3 residues
by yuich » Sun, 2010-09-26 21:07
1
2,233 by aroop
Mon, 2014-04-21 06:47
Normal topic rosetta3 compliation
by sdh » Mon, 2009-05-04 03:16
0
1,233 by sdh
Mon, 2014-04-21 06:47
Normal topic Rosetta3 - docking_protocol - fold_tree and number of residues problem
by dsept » Sat, 2009-09-05 11:32
4
4,645 by sid
Mon, 2014-04-21 06:47
Normal topic Rosetta-2.3.0 build on MAC OSX 10.5.8
by joseph » Wed, 2010-09-08 10:26
1
3,607 by smlewis
Mon, 2014-04-21 06:47
Normal topic Rosetta-2.3.0 build on fedora 9
by akneoh » Mon, 2008-11-17 16:22
1
1,881 by Temsiri
Mon, 2014-04-21 06:47
Normal topic Rosetta stops while generating decoys
by jjan » Wed, 2010-01-13 00:45
0
1,426 by jjan
Mon, 2014-04-21 06:47
Normal topic rosetta reproducibility
by lcavallo » Thu, 2009-03-05 02:55
2
2,429 by lcavallo
Mon, 2014-04-21 06:47
Normal topic Rosetta Loop Modeling error
by mdyini » Tue, 2009-03-31 15:22
1
1,646 by vanita
Mon, 2014-04-21 06:47
Normal topic Rosetta hangs while generating decoys
by lcavallo » Sat, 2009-03-07 02:11
0
1,448 by lcavallo
Mon, 2014-04-21 06:47
Normal topic Rosetta for Windows
by jp » Wed, 2008-04-23 23:38
2
6,125 by yiliu
Mon, 2014-04-21 06:47
Normal topic Rosetta doesn't read the starting structure - solved
by Bob3k » Fri, 2009-02-06 02:00
4
4,238 by Bob3k
Mon, 2014-04-21 06:47
Normal topic rosetta antibody model, the option -snug_fit
by jarod » Thu, 2010-04-01 18:30
0
1,683 by jarod
Mon, 2014-04-21 06:47
Normal topic Rosetta and Membrane Proteins
by admin » Fri, 2008-04-18 15:26
1
1,237 by admin
Mon, 2014-04-21 06:47
Normal topic Rosetta Academic Workshop Series
by xavier » Mon, 2009-01-26 11:50
0
1,841 by xavier
Mon, 2014-04-21 06:47
Normal topic Rosetta 2.1.1 troubleshooting
by yiliu » Thu, 2008-01-10 08:51
1
1,647 by yiliu
Mon, 2014-04-21 06:47
Normal topic rg cutoff
by yiliu » Thu, 2008-01-10 08:46
1
1,320 by yiliu
Mon, 2014-04-21 06:47
Normal topic resemble docking use rosettadock found rms=0 in output
by lqzhang » Sun, 2009-07-19 06:01
1
1,888 by lqzhang
Mon, 2014-04-21 06:47
Normal topic Re-building protocol crash
by murgantia » Sun, 2011-03-13 05:28
0
1,461 by murgantia
Mon, 2014-04-21 06:47
Normal topic Re orienting files from the PDB.
by AndrewBworth » Thu, 2009-06-25 19:09
1
1,756 by vanita
Mon, 2014-04-21 06:47
Normal topic random seed
by kosa » Thu, 2008-05-08 03:11
5
4,982 by rmoretti
Tue, 2017-06-20 08:47
Normal topic Questions about -fix_natsc and -trim
by mdyini » Thu, 2009-06-11 13:27
0
1,364 by mdyini
Mon, 2014-04-21 06:47
Normal topic question about file: cluster_info_silent
by admin » Fri, 2008-04-18 15:19
4
2,421 by ndousis
Mon, 2014-04-21 06:47
Normal topic program not terminating...
by atoler » Wed, 2009-02-25 06:40
2
1,982 by atoler
Mon, 2014-04-21 06:47
Normal topic producing good idealized structures
by lesi » Thu, 2009-06-18 15:06
3
3,042 by sid
Mon, 2014-04-21 06:47
Normal topic Problems in installing Rosetta3 in Red Hat Linux
by jjz2009 » Fri, 2009-08-21 08:21
1
1,925 by jjz2009
Mon, 2014-04-21 06:47
Normal topic problems building rosetta 2.3.0 with icc
by lcavallo » Wed, 2009-03-04 05:32
0
1,489 by lcavallo
Mon, 2014-04-21 06:47
Normal topic Prepacking structures using RosettaDock on a Windows platform
by suj88 » Fri, 2009-03-13 14:20
1
2,846 by suj88
Mon, 2014-04-21 06:47
Normal topic pose_ligand_docking? and constraint file...
by mdyini » Wed, 2009-07-01 20:13
0
1,409 by mdyini
Mon, 2014-04-21 06:47
Normal topic Pose Docking
by AndrewBworth » Sat, 2009-08-08 12:50
2
2,546 by matchf
Mon, 2014-04-21 06:47
Normal topic pNNMAKE and loops zone file
by yiliu » Thu, 2008-01-10 08:49
1
1,210 by yiliu
Mon, 2014-04-21 06:47
Normal topic Piecing together multiple domains
by AndrewBworth » Mon, 2009-06-22 14:24
1
1,864 by vanita
Mon, 2014-04-21 06:47
Normal topic N-terminus and loops
by sreiling » Thu, 2009-01-29 08:27
3
2,535 by vanita
Mon, 2014-04-21 06:47
Normal topic multiple_processor
by yiliu » Thu, 2008-01-10 08:47
1
1,260 by yiliu
Mon, 2014-04-21 06:47
Hot topic multigraft design
by spraha » Wed, 2012-01-11 07:57
28
20,034 by Sergey Menis
Mon, 2014-04-21 06:47
Normal topic MPI Rosetta
by pager2 » Fri, 2008-08-01 08:13
1
2,192 by yiliu
Mon, 2014-04-21 06:47
Normal topic module reconstruct_PDB_by_index module reconstruct_PDB_by_index
by yiliu » Thu, 2008-01-10 08:30
1
1,240 by yiliu
Mon, 2014-04-21 06:47
Normal topic modelling loops and inserted domains
by danzinho » Fri, 2009-01-16 02:14
6
4,726 by wenchangyu2008
Mon, 2014-04-21 06:47
Normal topic Missing make options for 64-bit platforms in RosettaBundle-2.3.0.gz
by dean » Fri, 2008-06-06 04:17
2
1,608 by rmosca
Mon, 2014-04-21 06:47
Normal topic MinGW build problem
by tlmcraig » Thu, 2008-08-21 12:22
1
2,264 by yiliu
Mon, 2014-04-21 06:47
Normal topic membrane protein docking
by angel » Thu, 2008-10-23 08:50
2
2,102 by yiliu
Mon, 2014-04-21 06:47
Normal topic Make_fragments.pl database
by TiagoGomes » Wed, 2009-10-14 04:46
1
1,911 by brspurri
Mon, 2014-04-21 06:47
Normal topic make_fragments
by ctaylor » Mon, 2009-09-21 12:42
4
3,451 by smlewis
Mon, 2014-04-21 06:47
Normal topic make_fragment
by icb_bio » Tue, 2008-05-06 22:12
7
4,862 by aork
Mon, 2014-04-21 06:47
Normal topic make fragment
by joseph » Sun, 2010-10-31 21:16
0
1,521 by joseph
Mon, 2014-04-21 06:47
Normal topic Loop modeling with multiple chains
by sonyadave » Tue, 2008-05-06 13:44
3
2,828 by sonyadave
Mon, 2014-04-21 06:47
Normal topic loop modeling with KIC mode
by wenchangyu2008 » Tue, 2010-03-02 06:05
2
2,833 by wenchangyu2008
Mon, 2014-04-21 06:47
Normal topic Linux Distros and Settings
by Brev » Tue, 2008-08-19 17:48
2
2,415 by sdarnell
Mon, 2014-04-21 06:47
Normal topic ligand dock residue selection
by Silice » Mon, 2009-08-03 07:54
1
1,774 by Silice
Mon, 2014-04-21 06:47
Normal topic Is it possible to score interface in -score mode? **Solved**
by maperalta » Thu, 2009-07-23 10:29
1
2,424 by maperalta
Mon, 2014-04-21 06:47
Normal topic Interpreting Clustering Results
by PaulaBanks » Sat, 2013-06-08 23:41
2
3,470 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Installation report and instructions: Ubuntu 8.10 64 bit
by TamirEr » Mon, 2009-01-12 11:18
4
4,905 by chinhsutran
Mon, 2014-04-21 06:47
Normal topic Input files of RosettaDNA mode
by r96631028 » Tue, 2009-04-28 04:39
0
1,338 by r96631028
Mon, 2014-04-21 06:47
Normal topic Increase compactness of decoys
by kosa » Sat, 2008-06-21 12:47
5
2,338 by kosa
Mon, 2014-04-21 06:47
Normal topic icc versus gcc and 64bit versus 32bit performances
by lcavallo » Fri, 2009-02-20 15:29
0
1,227 by lcavallo
Mon, 2014-04-21 06:47
Normal topic How to set gcc optimization level with scons to compile 64bit rosetta-2.3.0
by hazards » Fri, 2009-05-15 14:16
0
2,948 by hazards
Mon, 2014-04-21 06:47
Normal topic how to score a pdb in rosetta 2.3
by Lindsay » Tue, 2012-07-17 08:42
1
1,836 by smlewis
Mon, 2014-04-21 06:47
Normal topic How to reconstruct full atom structure from silent file
by kosa » Mon, 2008-06-23 07:25
7
4,313 by yiliu
Mon, 2014-04-21 06:47
Normal topic How to prepare the pdblist file for docking_ensmble in Rosetta3.4
This topic has been moved to "Rosetta 3 - General " (View topic)
Normal topic How to model a protein that dimerizes to a small molecule?
This topic has been moved to "Rosetta 3 - General " (View topic)
Normal topic how to get around no sequence for de novo design?
by neilcifer » Mon, 2008-10-06 15:01
3
2,049 by huxz
Mon, 2014-04-21 06:47
Normal topic How to dock structures locally?
by rwn » Thu, 2008-05-15 07:26
1
1,354 by yiliu
Mon, 2014-04-21 06:47
Normal topic how to change the parameter weight in rosetta 2.3
by Lindsay » Tue, 2012-04-24 14:09
3
2,763 by Lindsay
Mon, 2014-04-21 06:47
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