The problem hasn't been solved
Hi all
Recently I'm now doing large scale protein ligand docking using rosetta
while I'm doing , I got the following warning not error
Just wanted to confirm there is no semi-official script or protocol for DMS using Rosetta and ddg cartesian?
Seems like an easy enough thing to script using existing methods and protocols....but ideally, I would like a strategy that avoided generating 19 WT models per-site, per-iteration (since just one set would suffice for all DDGs).
That would same me a lot of comput time. For a 500aa protein with 10 iterations per DDG estimate, that would save me from building (18x500x10=90,000 superfulous models.
Hi,
I'm having trouble building 3.14 from the release 371 source on RHEL8 using gcc 8.5.0 following the instructions at https://phenix-online.org/documentation/reference/rosetta_install.html. I realize this is a newer compiler / glibc, but that doesn't seem to be the issue. Instead I seem to be seeing missing / incompatible header issues. Specifically, I get:
I'm hoping someone here can point me to the actual source tree that was used to build rosetta_graphics_6.04_x86_64-apple-darwin.
I am the long time volunteer Mac programmer for BOINC and am working on fixing the problems with the BOINC screensaver when running under MacOS 14 Sonoma. I want to build the Rosetta graphics app rosetta_graphics_6.04_x86_64-apple-darwin from the source files but link it with my modified BOINC libraries to confirm that my code fixes the screensaver for project graphics.
On April 3, I submitted three identical jobs listed below:
21428
21427
21425
I want to cancel the jobs but when I hit “Cancel” nothing happens. How can I kill these jobs?
Hello, I downloaded the last github version of Rosetta, and trying to build it in my Mac. I'm facing the next errors that stop the building:
"Running versioning script ...
Encounter error while executing: git rev-parse "HEAD:source/src/python/PyRosetta/binder"
Encounter error while executing: git rev-parse "HEAD:source/src/python/PyRosetta/binder"
fatal: not a git repository (or any of the parent directories): .git"
My laptop details are:
Model Name: MacBook Air
hi! i'm trying to download Rosetta as an academic user. Whenever I attempt to download Rosetta (Software > License & Download > Academic Download > Download Rosetta 3.14 or any of the releases), I get an error saying "Forbidden. You don't have permission to access /downloads/academic/3.14 on this server." I tried reaching out to the CoMotion people at UW, and they said they cannot help and to ask here. How do I get access to download Rosetta? I keep looking for a license agreement i need to fill out or something but can't find anything. Thank you!
Hi, I am having difficult with downloading and compiling the academic version of Rosetta from github (but perhaps that is the wrong way to do it by cloning it onto my Desktop - MacOS 14.4). I tried to compile using scons and it seemed to work following the full instructions, but I noticed I do not have a rosetta/main/ folder. I found a rosetta/source/bin folder and compiled into that source folder. Is that correct? I can now see a number .macosclangrelease files. Thank you.
Dear users,
Because GFP chromophore (CRO) comes from cyclization of three amino acids: S, Y, and G, I am not sure how to model it.
(1) In "Using NCAAs in Protein-Peptide Interface Design", Ornithine can be seen as a modified form of Lys: only one amino acid.
However, CRO includes three amino acids, so there are total three R groups. When preparing rotamer library, CHI angles from three R groups seems confusing.
Hello! I'm quite new to (Py)Rosetta, so my question may have a very obvious answer, but I tried to find it in many places but couldn't find it, so I figured this was a good place to ask.
