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Rosetta++ - General

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Sticky topic Sticky: READ ME FIRST
by rmoretti » Fri, 2015-09-04 15:23
1
2,493 by rmoretti
Tue, 2017-06-20 08:48
Normal topic Timer
by Temsiri » Sun, 2008-11-09 06:57
0
875 by Temsiri
Mon, 2014-04-21 06:47
Normal topic Deb or rpm files?
by tlmcraig » Wed, 2008-08-20 23:24
0
926 by tlmcraig
Mon, 2014-04-21 06:47
Normal topic Unable to determine sequence length from pdb file
by imartins » Tue, 2008-09-30 11:50
0
931 by imartins
Mon, 2014-04-21 06:47
Normal topic building parallel Rosetta 2.3 on a 64-bit machine
by dwoods » Mon, 2008-10-27 11:21
0
983 by dwoods
Mon, 2014-04-21 06:47
Normal topic Consistency of interface DDG calculations
by JuliusSu » Sun, 2014-03-30 21:35
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999 by JuliusSu
Sun, 2014-03-30 21:35
Normal topic abinitio
by vamsi » Fri, 2008-11-21 12:21
0
1,082 by vamsi
Mon, 2014-04-21 06:47
Normal topic Constraints on residue size
by yiliu » Thu, 2008-01-10 08:44
1
1,133 by yiliu
Mon, 2014-04-21 06:47
Normal topic Compiles fine but seg faults on everything
by mckinneys » Thu, 2008-07-24 12:28
1
1,145 by yiliu
Mon, 2014-04-21 06:47
Normal topic help!!!
by yiliu » Thu, 2008-01-10 08:33
1
1,148 by yiliu
Mon, 2014-04-21 06:47
Normal topic how long does it take?
by Piter_ » Thu, 2008-05-15 06:10
1
1,164 by Elin
Mon, 2014-04-21 06:47
Normal topic abinitio modeling
by vamsi » Mon, 2008-11-17 12:13
1
1,167 by yiliu
Mon, 2014-04-21 06:47
Normal topic pNNMAKE and loops zone file
by yiliu » Thu, 2008-01-10 08:49
1
1,175 by yiliu
Mon, 2014-04-21 06:47
Normal topic Help with flexible backbone design
by neilcifer » Thu, 2008-11-20 10:45
0
1,177 by neilcifer
Mon, 2014-04-21 06:47
Normal topic RosettaDock and -flex_peptide
by pshannon » Tue, 2008-09-16 17:56
1
1,184 by yiliu
Mon, 2014-04-21 06:47
Normal topic icc versus gcc and 64bit versus 32bit performances
by lcavallo » Fri, 2009-02-20 15:29
0
1,205 by lcavallo
Mon, 2014-04-21 06:47
Normal topic module reconstruct_PDB_by_index module reconstruct_PDB_by_index
by yiliu » Thu, 2008-01-10 08:30
1
1,208 by yiliu
Mon, 2014-04-21 06:47
Normal topic Rosetta and Membrane Proteins
by admin » Fri, 2008-04-18 15:26
1
1,210 by admin
Mon, 2014-04-21 06:47
Normal topic rosetta3 compliation
by sdh » Mon, 2009-05-04 03:16
0
1,213 by sdh
Mon, 2014-04-21 06:47
Normal topic ulfated tyrosine in Rosetta
by yiliu » Thu, 2008-01-10 08:29
1
1,220 by yiliu
Mon, 2014-04-21 06:47
Normal topic multiple_processor
by yiliu » Thu, 2008-01-10 08:47
1
1,226 by yiliu
Mon, 2014-04-21 06:47
Normal topic Getting the scorefilter value from a calibration run
by lcavallo » Fri, 2009-03-20 06:18
0
1,229 by lcavallo
Mon, 2014-04-21 06:47
Normal topic Docking Protocol ERROR
by bwp » Wed, 2009-04-08 08:41
0
1,237 by bwp
Mon, 2014-04-21 06:47
Normal topic GTP-bound proteins
by mbh » Thu, 2008-11-13 11:35
1
1,240 by yiliu
Mon, 2014-04-21 06:47
Normal topic Compiling Mpilan option
by TiagoGomes » Tue, 2009-04-21 05:34
0
1,242 by TiagoGomes
Mon, 2014-04-21 06:47
Normal topic rg cutoff
by yiliu » Thu, 2008-01-10 08:46
1
1,281 by yiliu
Mon, 2014-04-21 06:47
Normal topic Computing ddg_binding
by hetu » Mon, 2008-09-29 19:11
1
1,299 by yiliu
Mon, 2014-04-21 06:47
Normal topic Which vall version are make_fragment based on?
by lennylv » Thu, 2009-04-02 05:00
0
1,302 by lennylv
Mon, 2014-04-21 06:47
Normal topic Input files of RosettaDNA mode
by r96631028 » Tue, 2009-04-28 04:39
0
1,319 by r96631028
Mon, 2014-04-21 06:47
Normal topic How to dock structures locally?
by rwn » Thu, 2008-05-15 07:26
1
1,322 by yiliu
Mon, 2014-04-21 06:47
Normal topic To add/include unusual amino acids in RosettaDesign
by shirleyzheng » Mon, 2009-07-06 09:34
0
1,324 by shirleyzheng
Mon, 2014-04-21 06:47
Normal topic got here mapping777777 -1 at ~/rosetta/antibody/scripts/ram_blastscript.pl line 10
by wtscrystal » Mon, 2009-05-04 06:08
0
1,330 by wtscrystal
Mon, 2014-04-21 06:47
Normal topic -regions
by mdyini » Wed, 2009-11-25 15:35
0
1,331 by mdyini
Mon, 2014-04-21 06:47
Normal topic Questions about -fix_natsc and -trim
by mdyini » Thu, 2009-06-11 13:27
0
1,340 by mdyini
Mon, 2014-04-21 06:47
Normal topic pose_ligand_docking? and constraint file...
by mdyini » Wed, 2009-07-01 20:13
0
1,387 by mdyini
Mon, 2014-04-21 06:47
Normal topic Rosetta stops while generating decoys
by jjan » Wed, 2010-01-13 00:45
0
1,407 by jjan
Mon, 2014-04-21 06:47
Normal topic Can Rosetta generate proteins with sidechains ?
by wszjzhang » Thu, 2010-01-07 13:08
0
1,407 by wszjzhang
Mon, 2014-04-21 06:47
Normal topic How do you refine the native structure?
by yiliu » Thu, 2008-01-10 08:40
1
1,408 by yiliu
Mon, 2014-04-21 06:47
Normal topic use of constraints
by anusmita_sahoo » Thu, 2010-06-10 10:54
0
1,410 by anusmita_sahoo
Mon, 2014-04-21 06:47
Normal topic fragment generation - local vs server
by danzinho » Fri, 2008-07-25 02:09
1
1,411 by yiliu
Mon, 2014-04-21 06:47
Normal topic all-atom modelling and clustering
by danzinho » Fri, 2008-07-25 02:02
2
1,421 by danzinho
Mon, 2014-04-21 06:47
Normal topic Rosetta hangs while generating decoys
by lcavallo » Sat, 2009-03-07 02:11
0
1,430 by lcavallo
Mon, 2014-04-21 06:47
Normal topic How to allow rosetta to recognize the ASP and protonated ASP?
by Jeffrey_Chen » Mon, 2014-03-24 00:41
2
1,431 by Jeffrey_Chen
Tue, 2014-03-25 23:29
Normal topic docking search: first residue centroids, then full atom?
by pshannon » Wed, 2008-09-03 15:46
1
1,434 by yiliu
Mon, 2014-04-21 06:47
Normal topic Re-building protocol crash
by murgantia » Sun, 2011-03-13 05:28
0
1,442 by murgantia
Mon, 2014-04-21 06:47
Normal topic Using -fibril mode
by jiyongpark.77 » Thu, 2008-11-20 19:18
1
1,448 by jiyongpark.77
Mon, 2014-04-21 06:47
Normal topic capping termini
by luanna » Mon, 2008-05-12 10:50
1
1,459 by yiliu
Mon, 2014-04-21 06:47
Normal topic run_prof.py
by joseph » Fri, 2010-11-05 14:38
0
1,464 by joseph
Mon, 2014-04-21 06:47
Normal topic problems building rosetta 2.3.0 with icc
by lcavallo » Wed, 2009-03-04 05:32
0
1,467 by lcavallo
Mon, 2014-04-21 06:47
Normal topic Subclusters - what are they?
by Bob3k » Mon, 2009-06-15 05:58
0
1,478 by Bob3k
Mon, 2014-04-21 06:47
Normal topic Cluster methodology
by TiagoGomes » Wed, 2009-04-29 11:53
0
1,489 by TiagoGomes
Mon, 2014-04-21 06:47
Normal topic How to prepare the pdblist file for docking_ensmble in Rosetta3.4
This topic has been moved to "Rosetta 3 - General " (View topic)
Normal topic make fragment
by joseph » Sun, 2010-10-31 21:16
0
1,499 by joseph
Mon, 2014-04-21 06:47
Normal topic working with silent output - mergin, clustering and extracting
by kosa » Thu, 2008-05-15 05:54
1
1,503 by yiliu
Mon, 2014-04-21 06:47
Normal topic Unrecognized Residues in RosettaDock
by mboggara » Sat, 2010-03-20 19:48
0
1,540 by mboggara
Mon, 2014-04-21 06:47
Normal topic starting sequence with flexible backbone design
by kmaksim » Mon, 2009-03-23 07:10
1
1,560 by vanita
Mon, 2014-04-21 06:47
Normal topic Missing make options for 64-bit platforms in RosettaBundle-2.3.0.gz
by dean » Fri, 2008-06-06 04:17
2
1,562 by rmosca
Mon, 2014-04-21 06:47
Normal topic disulphides are only sometimes formed
by danzinho » Mon, 2009-01-19 08:42
1
1,568 by yiliu
Mon, 2014-04-21 06:47
Normal topic cluster.pl fails to extract best centers
by rmosca » Tue, 2008-12-02 03:10
1
1,572 by yiliu
Mon, 2014-04-21 06:47
Normal topic some posts from old forum
by admin » Tue, 2008-04-22 11:05
0
1,576 by admin
Mon, 2014-04-21 06:47
Normal topic Single or multiple decoys from relax?
by kosa » Thu, 2008-05-15 06:11
2
1,577 by kosa
Mon, 2014-04-21 06:47
Normal topic Difference between Eres, Ereduce, Enew?
by yiliu » Thu, 2008-01-10 08:48
1
1,597 by yiliu
Mon, 2014-04-21 06:47
Normal topic command lines for rebuilding-and-refinement protocol
by Temsiri » Fri, 2008-08-29 08:54
2
1,598 by Temsiri
Mon, 2014-04-21 06:47
Normal topic Rosetta Loop Modeling error
by mdyini » Tue, 2009-03-31 15:22
1
1,607 by vanita
Mon, 2014-04-21 06:47
Normal topic What's the difference between F and S labeled decoys?
by PaulaBanks » Mon, 2013-08-26 23:44
1
1,608 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Rosetta 2.1.1 troubleshooting
by yiliu » Thu, 2008-01-10 08:51
1
1,608 by yiliu
Mon, 2014-04-21 06:47
Normal topic Building a PDB from a set of internal coordinates.
by jcminerlanl » Mon, 2017-03-06 09:47
2
1,636 by rbhatta8
Tue, 2017-03-07 07:22
Normal topic ab initio with restraint
by Elin » Thu, 2008-08-28 18:42
2
1,639 by Elin
Mon, 2014-04-21 06:47
Normal topic test.fasta and test.dat files are not available in Rosetta2.3.0
by suj88 » Mon, 2009-03-23 17:14
1
1,642 by yiliu
Mon, 2014-04-21 06:47
Normal topic rosetta antibody model, the option -snug_fit
by jarod » Thu, 2010-04-01 18:30
0
1,663 by jarod
Mon, 2014-04-21 06:47
Normal topic Using dipolar coupling restraints in Rosetta v2.3
by pager2 » Mon, 2010-03-08 14:54
0
1,668 by pager2
Mon, 2014-04-21 06:47
Normal topic Examples in RosettaDock tutorials
by yiliu » Thu, 2008-01-10 08:27
1
1,687 by yiliu
Mon, 2014-04-21 06:47
Normal topic distance restrain rosetta 2.3
by sgrigna » Wed, 2009-03-25 08:42
1
1,698 by vanita
Mon, 2014-04-21 06:47
Normal topic some Q/A about SnugDock
by jarod » Fri, 2010-04-30 20:02
0
1,708 by jarod
Mon, 2014-04-21 06:47
Normal topic Fragment files for incomplet protein
by globalcoco » Sat, 2009-04-18 05:16
1
1,710 by vanita
Mon, 2014-04-21 06:47
Normal topic Re orienting files from the PDB.
by AndrewBworth » Thu, 2009-06-25 19:09
1
1,723 by vanita
Mon, 2014-04-21 06:47
Normal topic what is the F() in rosetta 2.3
by Lindsay » Fri, 2012-06-08 14:44
1
1,728 by smlewis
Mon, 2014-04-21 06:47
Normal topic ligand dock residue selection
by Silice » Mon, 2009-08-03 07:54
1
1,731 by Silice
Mon, 2014-04-21 06:47
Normal topic Cluster is down..
by AndrewBworth » Wed, 2009-06-17 10:10
1
1,734 by vanita
Mon, 2014-04-21 06:47
Normal topic difference between score and bk_tot
by Lindsay » Wed, 2012-05-23 21:25
1
1,734 by smlewis
Mon, 2014-04-21 06:47
Normal topic Barcode constraint file
by rkhayat » Fri, 2009-05-15 16:02
1
1,740 by davidk
Mon, 2014-04-21 06:47
Normal topic how do I repeat relax runs and get scoring functions at every state
by Temsiri » Mon, 2008-11-03 19:42
3
1,786 by vanita
Mon, 2014-04-21 06:47
Normal topic how to score a pdb in rosetta 2.3
by Lindsay » Tue, 2012-07-17 08:42
1
1,800 by smlewis
Mon, 2014-04-21 06:47
Normal topic cluster_info_silent.out GLIB problem
by Jungi » Wed, 2009-07-08 01:35
1
1,812 by Jungi
Mon, 2014-04-21 06:47
Normal topic Rosetta Academic Workshop Series
by xavier » Mon, 2009-01-26 11:50
0
1,815 by xavier
Mon, 2014-04-21 06:47
Normal topic Why so wried way?
by dikov » Fri, 2010-03-05 04:57
0
1,815 by dikov
Mon, 2014-04-21 06:47
Normal topic sequence variability in rosetta design
by sdh » Thu, 2009-10-15 03:44
1
1,821 by smlewis
Mon, 2014-04-21 06:47
Normal topic running multiple instances of rosetta
by yiliu » Thu, 2008-01-10 08:39
2
1,821 by kosa
Mon, 2014-04-21 06:47
Normal topic comparing 2 docking sites : howto ?
by lcavallo » Mon, 2009-07-27 13:38
1
1,833 by sid
Mon, 2014-04-21 06:47
Normal topic Side chain sampling
by mayo » Wed, 2009-04-15 10:14
1
1,834 by kaufmann
Mon, 2014-04-21 06:47
Normal topic Piecing together multiple domains
by AndrewBworth » Mon, 2009-06-22 14:24
1
1,835 by vanita
Mon, 2014-04-21 06:47
Normal topic Flexible-backbone Rosetta design (partial flexibility)
by shirleyzheng » Mon, 2009-05-11 11:27
1
1,838 by marthapedraza
Mon, 2014-04-21 06:47
Normal topic Rosetta-2.3.0 build on fedora 9
by akneoh » Mon, 2008-11-17 16:22
1
1,843 by Temsiri
Mon, 2014-04-21 06:47
Normal topic resemble docking use rosettadock found rms=0 in output
by lqzhang » Sun, 2009-07-19 06:01
1
1,853 by lqzhang
Mon, 2014-04-21 06:47
Normal topic symmetric design in rosetta3
by sdh » Wed, 2009-07-08 07:30
1
1,866 by smlewis
Mon, 2014-04-21 06:47
Normal topic BLOUSE62
by AndrewBworth » Tue, 2009-06-16 13:32
1
1,868 by vanita
Mon, 2014-04-21 06:47
Normal topic Make_fragments.pl database
by TiagoGomes » Wed, 2009-10-14 04:46
1
1,870 by brspurri
Mon, 2014-04-21 06:47
Normal topic How to build a parallel version of rosetta++ (Rosetta2.3.0) ?
by ice_flame » Fri, 2011-03-25 22:20
0
1,878 by ice_flame
Mon, 2014-04-21 06:47
Normal topic Problems in installing Rosetta3 in Red Hat Linux
by jjz2009 » Fri, 2009-08-21 08:21
1
1,894 by jjz2009
Mon, 2014-04-21 06:47
Normal topic Symmetric local protein docking
by efratmas » Mon, 2011-01-17 04:52
1
1,939 by smlewis
Mon, 2014-04-21 06:47
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