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Rosetta++ - General
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READ ME FIRST by rmoretti » Fri, 2015-09-04 15:23 |
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4,125 |
by rmoretti Tue, 2017-06-20 08:48 |
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question about antibody modeling and snugdock process option by iojeong » Sun, 2023-04-16 19:18 |
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501 |
by iojeong Sun, 2023-04-16 19:18 |
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Timer by Temsiri » Sun, 2008-11-09 06:57 |
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1,506 |
by Temsiri Mon, 2014-04-21 06:47 |
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Deb or rpm files? by tlmcraig » Wed, 2008-08-20 23:24 |
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1,541 |
by tlmcraig Mon, 2014-04-21 06:47 |
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Unable to determine sequence length from pdb file by imartins » Tue, 2008-09-30 11:50 |
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1,558 |
by imartins Mon, 2014-04-21 06:47 |
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Consistency of interface DDG calculations by JuliusSu » Sun, 2014-03-30 21:35 |
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1,660 |
by JuliusSu Sun, 2014-03-30 21:35 |
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building parallel Rosetta 2.3 on a 64-bit machine by dwoods » Mon, 2008-10-27 11:21 |
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1,667 |
by dwoods Mon, 2014-04-21 06:47 |
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abinitio by vamsi » Fri, 2008-11-21 12:21 |
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1,818 |
by vamsi Mon, 2014-04-21 06:47 |
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rosetta3 compliation by sdh » Mon, 2009-05-04 03:16 |
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1,903 |
by sdh Mon, 2014-04-21 06:47 |
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Help with flexible backbone design by neilcifer » Thu, 2008-11-20 10:45 |
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1,949 |
by neilcifer Mon, 2014-04-21 06:47 |
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icc versus gcc and 64bit versus 32bit performances by lcavallo » Fri, 2009-02-20 15:29 |
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1,950 |
by lcavallo Mon, 2014-04-21 06:47 |
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Docking Protocol ERROR by bwp » Wed, 2009-04-08 08:41 |
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1,970 |
by bwp Mon, 2014-04-21 06:47 |
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Getting the scorefilter value from a calibration run by lcavallo » Fri, 2009-03-20 06:18 |
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1,982 |
by lcavallo Mon, 2014-04-21 06:47 |
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Compiling Mpilan option by TiagoGomes » Tue, 2009-04-21 05:34 |
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1,993 |
by TiagoGomes Mon, 2014-04-21 06:47 |
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Input files of RosettaDNA mode by r96631028 » Tue, 2009-04-28 04:39 |
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2,016 |
by r96631028 Mon, 2014-04-21 06:47 |
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Which vall version are make_fragment based on? by lennylv » Thu, 2009-04-02 05:00 |
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2,030 |
by lennylv Mon, 2014-04-21 06:47 |
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got here mapping777777
-1 at ~/rosetta/antibody/scripts/ram_blastscript.pl line 10 by wtscrystal » Mon, 2009-05-04 06:08 |
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2,043 |
by wtscrystal Mon, 2014-04-21 06:47 |
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Constraints on residue size by yiliu » Thu, 2008-01-10 08:44 |
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2,047 |
by yiliu Mon, 2014-04-21 06:47 |
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Compiles fine but seg faults on everything by mckinneys » Thu, 2008-07-24 12:28 |
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2,118 |
by yiliu Mon, 2014-04-21 06:47 |
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RosettaDock and -flex_peptide by pshannon » Tue, 2008-09-16 17:56 |
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2,119 |
by yiliu Mon, 2014-04-21 06:47 |
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how long does it take? by Piter_ » Thu, 2008-05-15 06:10 |
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2,130 |
by Elin Mon, 2014-04-21 06:47 |
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help!!! by yiliu » Thu, 2008-01-10 08:33 |
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2,131 |
by yiliu Mon, 2014-04-21 06:47 |
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Questions about -fix_natsc and -trim by mdyini » Thu, 2009-06-11 13:27 |
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2,133 |
by mdyini Mon, 2014-04-21 06:47 |
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-regions by mdyini » Wed, 2009-11-25 15:35 |
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2,136 |
by mdyini Mon, 2014-04-21 06:47 |
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abinitio modeling by vamsi » Mon, 2008-11-17 12:13 |
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2,137 |
by yiliu Mon, 2014-04-21 06:47 |
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pNNMAKE and loops zone file by yiliu » Thu, 2008-01-10 08:49 |
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2,159 |
by yiliu Mon, 2014-04-21 06:47 |
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module reconstruct_PDB_by_index
module reconstruct_PDB_by_index by yiliu » Thu, 2008-01-10 08:30 |
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2,171 |
by yiliu Mon, 2014-04-21 06:47 |
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To add/include unusual amino acids in RosettaDesign by shirleyzheng » Mon, 2009-07-06 09:34 |
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2,180 |
by shirleyzheng Mon, 2014-04-21 06:47 |
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Rosetta and Membrane Proteins by admin » Fri, 2008-04-18 15:26 |
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2,182 |
by admin Mon, 2014-04-21 06:47 |
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GTP-bound proteins by mbh » Thu, 2008-11-13 11:35 |
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2,191 |
by yiliu Mon, 2014-04-21 06:47 |
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Re-building protocol crash by murgantia » Sun, 2011-03-13 05:28 |
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2,193 |
by murgantia Mon, 2014-04-21 06:47 |
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multiple_processor by yiliu » Thu, 2008-01-10 08:47 |
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2,198 |
by yiliu Mon, 2014-04-21 06:47 |
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Rosetta hangs while generating decoys by lcavallo » Sat, 2009-03-07 02:11 |
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2,199 |
by lcavallo Mon, 2014-04-21 06:47 |
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problems building rosetta 2.3.0 with icc by lcavallo » Wed, 2009-03-04 05:32 |
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2,206 |
by lcavallo Mon, 2014-04-21 06:47 |
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Can Rosetta generate proteins with sidechains ? by wszjzhang » Thu, 2010-01-07 13:08 |
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2,212 |
by wszjzhang Mon, 2014-04-21 06:47 |
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use of constraints by anusmita_sahoo » Thu, 2010-06-10 10:54 |
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2,217 |
by anusmita_sahoo Mon, 2014-04-21 06:47 |
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pose_ligand_docking? and constraint file... by mdyini » Wed, 2009-07-01 20:13 |
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2,222 |
by mdyini Mon, 2014-04-21 06:47 |
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Rosetta stops while generating decoys by jjan » Wed, 2010-01-13 00:45 |
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2,227 |
by jjan Mon, 2014-04-21 06:47 |
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run_prof.py by joseph » Fri, 2010-11-05 14:38 |
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2,232 |
by joseph Mon, 2014-04-21 06:47 |
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rg cutoff by yiliu » Thu, 2008-01-10 08:46 |
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2,249 |
by yiliu Mon, 2014-04-21 06:47 |
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ulfated tyrosine in Rosetta by yiliu » Thu, 2008-01-10 08:29 |
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2,280 |
by yiliu Mon, 2014-04-21 06:47 |
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Cluster methodology by TiagoGomes » Wed, 2009-04-29 11:53 |
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2,282 |
by TiagoGomes Mon, 2014-04-21 06:47 |
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make fragment by joseph » Sun, 2010-10-31 21:16 |
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2,299 |
by joseph Mon, 2014-04-21 06:47 |
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Subclusters - what are they? by Bob3k » Mon, 2009-06-15 05:58 |
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2,333 |
by Bob3k Mon, 2014-04-21 06:47 |
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How to dock structures locally? by rwn » Thu, 2008-05-15 07:26 |
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2,337 |
by yiliu Mon, 2014-04-21 06:47 |
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fragment generation - local vs server by danzinho » Fri, 2008-07-25 02:09 |
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2,355 |
by yiliu Mon, 2014-04-21 06:47 |
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Unrecognized Residues in RosettaDock by mboggara » Sat, 2010-03-20 19:48 |
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2,370 |
by mboggara Mon, 2014-04-21 06:47 |
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How do you refine the native structure? by yiliu » Thu, 2008-01-10 08:40 |
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2,413 |
by yiliu Mon, 2014-04-21 06:47 |
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some posts from old forum by admin » Tue, 2008-04-22 11:05 |
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2,454 |
by admin Mon, 2014-04-21 06:47 |
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docking search: first residue centroids, then full atom? by pshannon » Wed, 2008-09-03 15:46 |
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2,458 |
by yiliu Mon, 2014-04-21 06:47 |
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rosetta antibody model, the option -snug_fit by jarod » Thu, 2010-04-01 18:30 |
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2,498 |
by jarod Mon, 2014-04-21 06:47 |
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working with silent output - mergin, clustering and extracting by kosa » Thu, 2008-05-15 05:54 |
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2,499 |
by yiliu Mon, 2014-04-21 06:47 |
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capping termini by luanna » Mon, 2008-05-12 10:50 |
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2,515 |
by yiliu Mon, 2014-04-21 06:47 |
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Using dipolar coupling restraints in Rosetta v2.3 by pager2 » Mon, 2010-03-08 14:54 |
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2,568 |
by pager2 Mon, 2014-04-21 06:47 |
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Computing ddg_binding by hetu » Mon, 2008-09-29 19:11 |
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2,602 |
by yiliu Mon, 2014-04-21 06:47 |
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Using -fibril mode by jiyongpark.77 » Thu, 2008-11-20 19:18 |
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2,606 |
by jiyongpark.77 Mon, 2014-04-21 06:47 |
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Rosetta Academic Workshop Series by xavier » Mon, 2009-01-26 11:50 |
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2,641 |
by xavier Mon, 2014-04-21 06:47 |
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Rosetta 2.1.1 troubleshooting by yiliu » Thu, 2008-01-10 08:51 |
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2,646 |
by yiliu Mon, 2014-04-21 06:47 |
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some Q/A about SnugDock by jarod » Fri, 2010-04-30 20:02 |
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2,649 |
by jarod Mon, 2014-04-21 06:47 |
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Why so wried way? by dikov » Fri, 2010-03-05 04:57 |
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2,655 |
by dikov Mon, 2014-04-21 06:47 |
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Difference between Eres, Ereduce, Enew? by yiliu » Thu, 2008-01-10 08:48 |
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2,663 |
by yiliu Mon, 2014-04-21 06:47 |
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Rosetta Loop Modeling error by mdyini » Tue, 2009-03-31 15:22 |
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2,674 |
by vanita Mon, 2014-04-21 06:47 |
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starting sequence with flexible backbone design by kmaksim » Mon, 2009-03-23 07:10 |
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2,702 |
by vanita Mon, 2014-04-21 06:47 |
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Examples in RosettaDock tutorials by yiliu » Thu, 2008-01-10 08:27 |
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2,709 |
by yiliu Mon, 2014-04-21 06:47 |
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disulphides are only sometimes formed by danzinho » Mon, 2009-01-19 08:42 |
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2,721 |
by yiliu Mon, 2014-04-21 06:47 |
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How to allow rosetta to recognize the ASP and protonated ASP? by Jeffrey_Chen » Mon, 2014-03-24 00:41 |
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2,745 |
by Jeffrey_Chen Tue, 2014-03-25 23:29 |
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all-atom modelling and clustering by danzinho » Fri, 2008-07-25 02:02 |
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2,758 |
by danzinho Mon, 2014-04-21 06:47 |
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cluster.pl fails to extract best centers by rmosca » Tue, 2008-12-02 03:10 |
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2,759 |
by yiliu Mon, 2014-04-21 06:47 |
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How to prepare the pdblist file for docking_ensmble in Rosetta3.4 This topic has been moved to "Rosetta 3 - General " (View topic) |
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Missing make options for 64-bit platforms in RosettaBundle-2.3.0.gz by dean » Fri, 2008-06-06 04:17 |
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2,809 |
by rmosca Mon, 2014-04-21 06:47 |
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How to build a parallel version of rosetta++ (Rosetta2.3.0) ? by ice_flame » Fri, 2011-03-25 22:20 |
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2,819 |
by ice_flame Mon, 2014-04-21 06:47 |
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Fragment files for incomplet protein by globalcoco » Sat, 2009-04-18 05:16 |
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2,825 |
by vanita Mon, 2014-04-21 06:47 |
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Barcode constraint file by rkhayat » Fri, 2009-05-15 16:02 |
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2,843 |
by davidk Mon, 2014-04-21 06:47 |
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distance restrain rosetta 2.3 by sgrigna » Wed, 2009-03-25 08:42 |
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2,853 |
by vanita Mon, 2014-04-21 06:47 |
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What's the difference between F and S labeled decoys? by PaulaBanks » Mon, 2013-08-26 23:44 |
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2,855 |
by rmoretti Mon, 2014-04-21 06:48 |
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command lines for rebuilding-and-refinement protocol by Temsiri » Fri, 2008-08-29 08:54 |
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2,869 |
by Temsiri Mon, 2014-04-21 06:47 |
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test.fasta and test.dat files are not available in Rosetta2.3.0 by suj88 » Mon, 2009-03-23 17:14 |
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2,904 |
by yiliu Mon, 2014-04-21 06:47 |
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Single or multiple decoys from relax? by kosa » Thu, 2008-05-15 06:11 |
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2,923 |
by kosa Mon, 2014-04-21 06:47 |
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ab initio with restraint by Elin » Thu, 2008-08-28 18:42 |
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2,935 |
by Elin Mon, 2014-04-21 06:47 |
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Flexible-backbone Rosetta design (partial flexibility) by shirleyzheng » Mon, 2009-05-11 11:27 |
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2,944 |
by marthapedraza Mon, 2014-04-21 06:47 |
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difference between score and bk_tot by Lindsay » Wed, 2012-05-23 21:25 |
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2,967 |
by smlewis Mon, 2014-04-21 06:47 |
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Re orienting files from the PDB. by AndrewBworth » Thu, 2009-06-25 19:09 |
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2,968 |
by vanita Mon, 2014-04-21 06:47 |
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ligand dock residue selection by Silice » Mon, 2009-08-03 07:54 |
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2,972 |
by Silice Mon, 2014-04-21 06:47 |
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Cluster is down.. by AndrewBworth » Wed, 2009-06-17 10:10 |
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2,986 |
by vanita Mon, 2014-04-21 06:47 |
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what is the F() in rosetta 2.3 by Lindsay » Fri, 2012-06-08 14:44 |
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2,990 |
by smlewis Mon, 2014-04-21 06:47 |
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Side chain sampling by mayo » Wed, 2009-04-15 10:14 |
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3,016 |
by kaufmann Mon, 2014-04-21 06:47 |
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Rosetta-2.3.0 build on fedora 9 by akneoh » Mon, 2008-11-17 16:22 |
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3,028 |
by Temsiri Mon, 2014-04-21 06:47 |
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how to score a pdb in rosetta 2.3 by Lindsay » Tue, 2012-07-17 08:42 |
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3,057 |
by smlewis Mon, 2014-04-21 06:47 |
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sequence variability in rosetta design by sdh » Thu, 2009-10-15 03:44 |
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3,058 |
by smlewis Mon, 2014-04-21 06:47 |
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comparing 2 docking sites : howto ? by lcavallo » Mon, 2009-07-27 13:38 |
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3,075 |
by sid Mon, 2014-04-21 06:47 |
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Piecing together multiple domains by AndrewBworth » Mon, 2009-06-22 14:24 |
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3,090 |
by vanita Mon, 2014-04-21 06:47 |
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Problems in installing Rosetta3 in Red Hat Linux by jjz2009 » Fri, 2009-08-21 08:21 |
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3,097 |
by jjz2009 Mon, 2014-04-21 06:47 |
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resemble docking use rosettadock found rms=0 in output by lqzhang » Sun, 2009-07-19 06:01 |
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3,101 |
by lqzhang Mon, 2014-04-21 06:47 |
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Make_fragments.pl database by TiagoGomes » Wed, 2009-10-14 04:46 |
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3,111 |
by brspurri Mon, 2014-04-21 06:47 |
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cluster_info_silent.out GLIB problem by Jungi » Wed, 2009-07-08 01:35 |
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3,116 |
by Jungi Mon, 2014-04-21 06:47 |
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BLOUSE62 by AndrewBworth » Tue, 2009-06-16 13:32 |
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3,118 |
by vanita Mon, 2014-04-21 06:47 |
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Symmetric local protein docking by efratmas » Mon, 2011-01-17 04:52 |
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3,146 |
by smlewis Mon, 2014-04-21 06:47 |
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running multiple instances of rosetta by yiliu » Thu, 2008-01-10 08:39 |
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3,182 |
by kosa Mon, 2014-04-21 06:47 |
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symmetric design in rosetta3 by sdh » Wed, 2009-07-08 07:30 |
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3,191 |
by smlewis Mon, 2014-04-21 06:47 |
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MinGW build problem by tlmcraig » Thu, 2008-08-21 12:22 |
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3,281 |
by yiliu Mon, 2014-04-21 06:47 |
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